RNA–Protein interactions for RNA: ENST00000371142.8

TM9SF3-201, Transcript of transmembrane 9 superfamily member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF3, Length 6,141 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-201ENST00000371142 Q8N377 158 aa14.54□□□□□ -0.08
TM9SF3-201ENST00000371142 PRR15Q8IV56 129 aa14.54□□□□□ -0.08
TM9SF3-201ENST00000371142 ANAPC11Q9NYG5 84 aa14.53□□□□□ -0.08
TM9SF3-201ENST00000371142 C19orf73Q9NVV2 129 aa14.53□□□□□ -0.08
TM9SF3-201ENST00000371142 APLNQ9ULZ1 77 aa14.53□□□□□ -0.08
TM9SF3-201ENST00000371142 ZNF861PO60384 105 aa14.53□□□□□ -0.08
TM9SF3-201ENST00000371142 GIG44P09565 113 aaPredicted RBP14.51□□□□□ -0.09
TM9SF3-201ENST00000371142 ANKRD17O75179 2603 aaKnown RBP14.51□□□□□ -0.09
TM9SF3-201ENST00000371142 SMR3BP02814 79 aaPredicted RBP14.51□□□□□ -0.09
TM9SF3-201ENST00000371142 A0A1B0GVX0 72 aa14.5□□□□□ -0.09
TM9SF3-201ENST00000371142 MTORP42345 2549 aa14.49□□□□□ -0.09
TM9SF3-201ENST00000371142 UQCR11O14957 56 aa14.48□□□□□ -0.09
TM9SF3-201ENST00000371142 A0A087WTM6 91 aa14.48□□□□□ -0.09
TM9SF3-201ENST00000371142 SPTBN4Q9H254 2564 aa14.48□□□□□ -0.09
TM9SF3-201ENST00000371142 CHD8Q9HCK8 2581 aa14.46□□□□□ -0.09
TM9SF3-201ENST00000371142 POLQO75417 2590 aa14.44□□□□□ -0.1
TM9SF3-201ENST00000371142 A0A096LNT2 108 aa14.43□□□□□ -0.1
TM9SF3-201ENST00000371142 CYP4F30PQ9H0H9 118 aa14.43□□□□□ -0.1
TM9SF3-201ENST00000371142 MIR22HGQ0VDD5 57 aa14.4□□□□□ -0.1
TM9SF3-201ENST00000371142 CASC10Q5T4H9 136 aa14.4□□□□□ -0.1
TM9SF3-201ENST00000371142 TLX1NBP0CAT3 122 aa14.38□□□□□ -0.11
TM9SF3-201ENST00000371142 C9orf163Q8N9P6 203 aa14.38□□□□□ -0.11
TM9SF3-201ENST00000371142 LINC00612Q8N6U2 182 aa14.38□□□□□ -0.11
TM9SF3-201ENST00000371142 PLA2G2DQ9UNK4 145 aa14.37□□□□□ -0.11
TM9SF3-201ENST00000371142 ACANP16112 2415 aa14.36□□□□□ -0.11
TM9SF3-201ENST00000371142 IGLV7-43P04211 117 aa14.35□□□□□ -0.11
TM9SF3-201ENST00000371142 PSORS1C2Q9UIG4 136 aa14.34□□□□□ -0.11
TM9SF3-201ENST00000371142 KLKP1Q107X0 134 aa14.34□□□□□ -0.11
TM9SF3-201ENST00000371142 CRIPTQ9P021 101 aa14.34□□□□□ -0.11
TM9SF3-201ENST00000371142 IGLV5-37A0A075B6J1 123 aa14.31□□□□□ -0.12
TM9SF3-201ENST00000371142 SPRR4Q96PI1 79 aa14.28□□□□□ -0.12
TM9SF3-201ENST00000371142 H7BZZ5 65 aa14.26□□□□□ -0.13
TM9SF3-201ENST00000371142 A0A1W2PNM2 257 aa14.25□□□□□ -0.13
TM9SF3-201ENST00000371142 GOLGB1Q14789 3259 aaKnown RBP14.24□□□□□ -0.13
TM9SF3-201ENST00000371142 Q8N1X5 172 aa14.23□□□□□ -0.13
TM9SF3-201ENST00000371142 F8P00451 2351 aa14.23□□□□□ -0.13
TM9SF3-201ENST00000371142 LINC01554Q52M75 96 aa14.23□□□□□ -0.13
TM9SF3-201ENST00000371142 A0A0D9SG42 100 aa14.21□□□□□ -0.13
TM9SF3-201ENST00000371142 CNBPP62633 177 aaKnown RBP14.2□□□□□ -0.14
TM9SF3-201ENST00000371142 ZNF575Q86XF7 245 aa14.2□□□□□ -0.14
TM9SF3-201ENST00000371142 RBM12B-AS1Q9P1G2 102 aa14.2□□□□□ -0.14
TM9SF3-201ENST00000371142 FASNP49327 2511 aaKnown RBP14.19□□□□□ -0.14
TM9SF3-201ENST00000371142 IGLV5-48A0A075B6I7 105 aa14.18□□□□□ -0.14
TM9SF3-201ENST00000371142 LINC00336Q6ZUF6 198 aa14.16□□□□□ -0.14
TM9SF3-201ENST00000371142 KRTAP1-3Q8IUG1 177 aa14.14□□□□□ -0.15
TM9SF3-201ENST00000371142 FAM104AQ969W3 186 aa14.14□□□□□ -0.15
TM9SF3-201ENST00000371142 KRTAP1-1Q07627 177 aa14.06□□□□□ -0.16
TM9SF3-201ENST00000371142 CDC42SE1Q9NRR8 79 aa14.04□□□□□ -0.16
TM9SF3-201ENST00000371142 SPANXA2-OT1Q8N9U9 137 aa14.04□□□□□ -0.16
TM9SF3-201ENST00000371142 TNP2Q05952 138 aa14.01□□□□□ -0.17
TM9SF3-201ENST00000371142 KTN1-AS1Q86SY8 53 aa14□□□□□ -0.17
TM9SF3-201ENST00000371142 PRR26Q8N8Z3 221 aa13.93□□□□□ -0.18
TM9SF3-201ENST00000371142 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.93□□□□□ -0.18
TM9SF3-201ENST00000371142 LCA10Q71F78 164 aa13.93□□□□□ -0.18
TM9SF3-201ENST00000371142 CD164Q04900 197 aa13.91□□□□□ -0.18
TM9SF3-201ENST00000371142 Q6ZSA8 131 aa13.9□□□□□ -0.18
TM9SF3-201ENST00000371142 OCR1Q9BZK8 76 aa13.89□□□□□ -0.19
TM9SF3-201ENST00000371142 IGLV7-46A0A075B6I9 117 aa13.83□□□□□ -0.19
TM9SF3-201ENST00000371142 CR1P17927 2039 aa13.82□□□□□ -0.2
TM9SF3-201ENST00000371142 USP24Q9UPU5 2620 aa13.79□□□□□ -0.2
TM9SF3-201ENST00000371142 HRES1P13985 223 aa13.79□□□□□ -0.2
TM9SF3-201ENST00000371142 EPG5Q9HCE0 2579 aa13.78□□□□□ -0.2
TM9SF3-201ENST00000371142 DNAH12Q6ZR08 3092 aa13.76□□□□□ -0.21
TM9SF3-201ENST00000371142 Q1T7F1 81 aa13.75□□□□□ -0.21
TM9SF3-201ENST00000371142 HECTD1Q9ULT8 2610 aa13.74□□□□□ -0.21
TM9SF3-201ENST00000371142 A0A1B0GU33 70 aa13.73□□□□□ -0.21
TM9SF3-201ENST00000371142 CAMK2N1Q7Z7J9 78 aa13.73□□□□□ -0.21
TM9SF3-201ENST00000371142 MGAM2Q2M2H8 2515 aa13.72□□□□□ -0.21
TM9SF3-201ENST00000371142 BPTFQ12830 3046 aa13.7□□□□□ -0.22
TM9SF3-201ENST00000371142 M0R2T5 61 aa13.69□□□□□ -0.22
TM9SF3-201ENST00000371142 PRRC2CQ9Y520 2896 aaKnown RBP13.68□□□□□ -0.22
TM9SF3-201ENST00000371142 LUZP6Q538Z0 58 aa13.67□□□□□ -0.22
TM9SF3-201ENST00000371142 Q8NDZ9 215 aa13.66□□□□□ -0.22
TM9SF3-201ENST00000371142 MMP24-AS1A0A0U1RRL7 71 aa13.66□□□□□ -0.22
TM9SF3-201ENST00000371142 Q8N9P0 234 aaPredicted RBP13.64□□□□□ -0.23
TM9SF3-201ENST00000371142 FAM229BQ4G0N7 80 aa13.64□□□□□ -0.23
TM9SF3-201ENST00000371142 ZCCHC13Q8WW36 166 aaKnown RBP13.62□□□□□ -0.23
TM9SF3-201ENST00000371142 PLAC8Q9NZF1 115 aa13.62□□□□□ -0.23
TM9SF3-201ENST00000371142 FLNBO75369 2602 aaKnown RBP13.58□□□□□ -0.23
TM9SF3-201ENST00000371142 Q75L30 129 aa13.58□□□□□ -0.24
TM9SF3-201ENST00000371142 S4R3F8 94 aa13.56□□□□□ -0.24
TM9SF3-201ENST00000371142 SPRR1AP35321 89 aa13.53□□□□□ -0.24
TM9SF3-201ENST00000371142 WIPF1O43516 503 aa13.52□□□□□ -0.25
TM9SF3-201ENST00000371142 LINC00483Q53H64 154 aa13.52□□□□□ -0.25
TM9SF3-201ENST00000371142 Q5W150 140 aa13.5□□□□□ -0.25
TM9SF3-201ENST00000371142 CSAG1Q6PB30 78 aa13.49□□□□□ -0.25
TM9SF3-201ENST00000371142 LINC01558Q9Y6Z2 57 aa13.48□□□□□ -0.25
TM9SF3-201ENST00000371142 FLNAP21333 2647 aaKnown RBP13.46□□□□□ -0.25
TM9SF3-201ENST00000371142 CYSTM1Q9H1C7 97 aa13.45□□□□□ -0.26
TM9SF3-201ENST00000371142 DMAC1Q96GE9 116 aa13.44□□□□□ -0.26
TM9SF3-201ENST00000371142 LINC00472Q9H8W2 130 aa13.43□□□□□ -0.26
TM9SF3-201ENST00000371142 UTRNP46939 3433 aa13.43□□□□□ -0.26
TM9SF3-201ENST00000371142 KRTAP1-5Q9BYS1 174 aa13.41□□□□□ -0.26
TM9SF3-201ENST00000371142 SPINK7P58062 85 aa13.4□□□□□ -0.26
TM9SF3-201ENST00000371142 PRAC1Q96KF2 57 aa13.4□□□□□ -0.26
TM9SF3-201ENST00000371142 ITPR3Q14573 2671 aa13.38□□□□□ -0.27
TM9SF3-201ENST00000371142 Q5XG85 94 aa13.38□□□□□ -0.27
TM9SF3-201ENST00000371142 SPRR1BP22528 89 aa13.37□□□□□ -0.27
TM9SF3-201ENST00000371142 C5orf42Q9H799 3197 aa13.35□□□□□ -0.27
TM9SF3-201ENST00000371142 FP248Q71RG6 208 aaPredicted RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms