RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 FAT1Q14517 4588 aa4.93□□□□□ -1.62
ZNF540-202ENST00000343599 M0R378 163 aa4.93□□□□□ -1.62
ZNF540-202ENST00000343599 CRPP02741 224 aa4.93□□□□□ -1.62
ZNF540-202ENST00000343599 LINC01547P58512 204 aaPredicted RBP4.93□□□□□ -1.62
ZNF540-202ENST00000343599 CLEC19AQ6UXS0 136 aa4.93□□□□□ -1.62
ZNF540-202ENST00000343599 LINC00337Q8N6G1 96 aa4.93□□□□□ -1.62
ZNF540-202ENST00000343599 INSP01308 110 aa4.92□□□□□ -1.62
ZNF540-202ENST00000343599 FUSP35637 526 aaKnown RBP eCLIP4.92□□□□□ -1.62
ZNF540-202ENST00000343599 Q6ZVQ6 151 aa4.92□□□□□ -1.62
ZNF540-202ENST00000343599 IGKV2-28A0A075B6P5 120 aa4.92□□□□□ -1.62
ZNF540-202ENST00000343599 IGHV3OR16-8A0A075B7F1 116 aa4.92□□□□□ -1.62
ZNF540-202ENST00000343599 LECT2O14960 151 aa4.92□□□□□ -1.62
ZNF540-202ENST00000343599 IGKV2D-28P01615 120 aa4.92□□□□□ -1.62
ZNF540-202ENST00000343599 REG3AQ06141 175 aa4.92□□□□□ -1.62
ZNF540-202ENST00000343599 CDKN2A-AS1Q9UH64 79 aa4.91□□□□□ -1.62
ZNF540-202ENST00000343599 PCLOQ9Y6V0 5065 aa4.91□□□□□ -1.62
ZNF540-202ENST00000343599 NDUFS5O43920 106 aa4.91□□□□□ -1.62
ZNF540-202ENST00000343599 IGHV3-23P01764 117 aa4.91□□□□□ -1.62
ZNF540-202ENST00000343599 NREPQ16612 68 aa4.91□□□□□ -1.62
ZNF540-202ENST00000343599 UBE2BP63146 152 aa4.9□□□□□ -1.62
ZNF540-202ENST00000343599 PHF5AQ7RTV0 110 aaKnown RBP4.9□□□□□ -1.62
ZNF540-202ENST00000343599 FAM19A3Q7Z5A8 133 aa4.9□□□□□ -1.62
ZNF540-202ENST00000343599 HYDINQ4G0P3 5121 aa4.9□□□□□ -1.63
ZNF540-202ENST00000343599 C14orf177Q52M58 125 aa4.9□□□□□ -1.63
ZNF540-202ENST00000343599 KIAA1109Q2LD37 5005 aa4.89□□□□□ -1.63
ZNF540-202ENST00000343599 LOC110117498A0A087WWA1 95 aa4.89□□□□□ -1.63
ZNF540-202ENST00000343599 IGHV3-38A0A0C4DH36 116 aa4.89□□□□□ -1.63
ZNF540-202ENST00000343599 IGHV3-11P01762 117 aa4.89□□□□□ -1.63
ZNF540-202ENST00000343599 REG3GQ6UW15 175 aa4.89□□□□□ -1.63
ZNF540-202ENST00000343599 Q8N3U1 123 aa4.89□□□□□ -1.63
ZNF540-202ENST00000343599 TMEM256-PLSCR3K7ERE1 68 aa4.89□□□□□ -1.63
ZNF540-202ENST00000343599 SLPIP03973 132 aa4.89□□□□□ -1.63
ZNF540-202ENST00000343599 RPL36AP83881 106 aaKnown RBP4.88□□□□□ -1.63
ZNF540-202ENST00000343599 DEFB135Q30KP9 77 aa4.88□□□□□ -1.63
ZNF540-202ENST00000343599 RNASE13Q5GAN3 156 aaKnown RBP4.88□□□□□ -1.63
ZNF540-202ENST00000343599 RPL36ALQ969Q0 106 aaKnown RBP4.88□□□□□ -1.63
ZNF540-202ENST00000343599 TRAV22A0A0B4J277 110 aa4.88□□□□□ -1.63
ZNF540-202ENST00000343599 IGHV3-66A0A0C4DH42 116 aa4.88□□□□□ -1.63
ZNF540-202ENST00000343599 SYCNQ0VAF6 134 aa4.88□□□□□ -1.63
ZNF540-202ENST00000343599 Q6ZQT0 140 aa4.88□□□□□ -1.63
ZNF540-202ENST00000343599 KLLNB2CW77 178 aa4.88□□□□□ -1.63
ZNF540-202ENST00000343599 SMIM1B2RUZ4 78 aa4.88□□□□□ -1.63
ZNF540-202ENST00000343599 Q6ZTI0 123 aa4.88□□□□□ -1.63
ZNF540-202ENST00000343599 TNXBP22105 4242 aa4.87□□□□□ -1.63
ZNF540-202ENST00000343599 C8orf87E5RJ46 101 aa4.87□□□□□ -1.63
ZNF540-202ENST00000343599 FAM74A4Q5TZK3 123 aa4.87□□□□□ -1.63
ZNF540-202ENST00000343599 FAT3Q8TDW7 4589 aa4.87□□□□□ -1.63
ZNF540-202ENST00000343599 NANOS2P60321 138 aaKnown RBP4.87□□□□□ -1.63
ZNF540-202ENST00000343599 COX6A2Q02221 97 aa4.87□□□□□ -1.63
ZNF540-202ENST00000343599 LINC01556Q5JQF7 62 aa4.87□□□□□ -1.63
ZNF540-202ENST00000343599 LCE2CQ5TA81 110 aa4.87□□□□□ -1.63
ZNF540-202ENST00000343599 SND1-IT1Q9HBX3 110 aa4.87□□□□□ -1.63
ZNF540-202ENST00000343599 HSPG2P98160 4391 aa4.87□□□□□ -1.63
ZNF540-202ENST00000343599 C16orf90A8MZG2 172 aa4.86□□□□□ -1.63
ZNF540-202ENST00000343599 SEC61BP60468 96 aaKnown RBP4.86□□□□□ -1.63
ZNF540-202ENST00000343599 PRB3Q04118 309 aaPredicted RBP4.86□□□□□ -1.63
ZNF540-202ENST00000343599 APOBP04114 4563 aaKnown RBP4.86□□□□□ -1.63
ZNF540-202ENST00000343599 IGHV3-16A0A0C4DH30 117 aa4.86□□□□□ -1.63
ZNF540-202ENST00000343599 IGHV3-35A0A0C4DH35 117 aa4.86□□□□□ -1.63
ZNF540-202ENST00000343599 BPY2O14599 106 aa4.86□□□□□ -1.63
ZNF540-202ENST00000343599 ZNF73O43830 326 aaPredicted RBP4.86□□□□□ -1.63
ZNF540-202ENST00000343599 KRTAP10-4P60372 401 aaPredicted RBP4.86□□□□□ -1.63
ZNF540-202ENST00000343599 OCR1Q9BZK8 76 aa4.86□□□□□ -1.63
ZNF540-202ENST00000343599 A6NN06 94 aa4.85□□□□□ -1.63
ZNF540-202ENST00000343599 PSPHP1O15172 72 aa4.85□□□□□ -1.63
ZNF540-202ENST00000343599 LINC00242Q5T6M2 205 aa4.85□□□□□ -1.63
ZNF540-202ENST00000343599 Q8N814 137 aa4.85□□□□□ -1.63
ZNF540-202ENST00000343599 C1orf64Q8NEQ6 169 aa4.85□□□□□ -1.63
ZNF540-202ENST00000343599 HAMPP81172 84 aa4.84□□□□□ -1.63
ZNF540-202ENST00000343599 IGHV3OR16-13A0A075B7E8 117 aa4.84□□□□□ -1.63
ZNF540-202ENST00000343599 IGHV3-74A0A0B4J1X5 117 aa4.84□□□□□ -1.63
ZNF540-202ENST00000343599 TRBV10-1A0A0K0K1A3 114 aa4.84□□□□□ -1.63
ZNF540-202ENST00000343599 DEFB131AP59861 70 aa4.84□□□□□ -1.63
ZNF540-202ENST00000343599 ATP11AUNQ6ZP68 121 aa4.84□□□□□ -1.63
ZNF540-202ENST00000343599 A8MU10 97 aa4.83□□□□□ -1.64
ZNF540-202ENST00000343599 UBE2L6O14933 153 aa4.83□□□□□ -1.64
ZNF540-202ENST00000343599 IGHV3OR16-12A0A075B7B8 117 aa4.83□□□□□ -1.64
ZNF540-202ENST00000343599 UBE2AP49459 152 aa4.83□□□□□ -1.64
ZNF540-202ENST00000343599 Q5VV11 94 aa4.83□□□□□ -1.64
ZNF540-202ENST00000343599 LINC00269Q8N2A0 174 aa4.83□□□□□ -1.64
ZNF540-202ENST00000343599 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.83□□□□□ -1.64
ZNF540-202ENST00000343599 UBE2DNLQ8IWF7 75 aa4.83□□□□□ -1.64
ZNF540-202ENST00000343599 TLN2Q9Y4G6 2542 aa4.83□□□□□ -1.64
ZNF540-202ENST00000343599 IGHV3-49A0A0A0MS15 119 aa4.82□□□□□ -1.64
ZNF540-202ENST00000343599 PDE6GP18545 87 aa4.82□□□□□ -1.64
ZNF540-202ENST00000343599 PSCAO43653 123 aa4.82□□□□□ -1.64
ZNF540-202ENST00000343599 TRBV6-4A0A1B0GX49 114 aa4.81□□□□□ -1.64
ZNF540-202ENST00000343599 DEFB1P60022 68 aa4.81□□□□□ -1.64
ZNF540-202ENST00000343599 DIRC1Q969H9 104 aa4.81□□□□□ -1.64
ZNF540-202ENST00000343599 CYP4F30PQ9H0H9 118 aa4.81□□□□□ -1.64
ZNF540-202ENST00000343599 A0A087WTM6 91 aa4.81□□□□□ -1.64
ZNF540-202ENST00000343599 IGLV9-49A0A0B4J1Y8 123 aa4.81□□□□□ -1.64
ZNF540-202ENST00000343599 A8MUN3 132 aa4.81□□□□□ -1.64
ZNF540-202ENST00000343599 LCE2AQ5TA79 106 aaPredicted RBP4.81□□□□□ -1.64
ZNF540-202ENST00000343599 C7orf65Q6ZTY9 151 aa4.81□□□□□ -1.64
ZNF540-202ENST00000343599 HIGD2AQ9BW72 106 aa4.81□□□□□ -1.64
ZNF540-202ENST00000343599 LRCOL1A6NCL2 159 aa4.81□□□□□ -1.64
ZNF540-202ENST00000343599 M0R2N4 97 aa4.81□□□□□ -1.64
ZNF540-202ENST00000343599 NTM-AS1Q6ZSK4 140 aa4.8□□□□□ -1.64
ZNF540-202ENST00000343599 LCA10Q71F78 164 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms