RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 SERTAD4-AS1Q5TG53 156 aa3.16□□□□□ -1.9
CSMD3-203ENST00000343508 HIVEP3Q5T1R4 2406 aa3.16□□□□□ -1.9
CSMD3-203ENST00000343508 CYSTM1Q9H1C7 97 aa3.16□□□□□ -1.9
CSMD3-203ENST00000343508 IGFL1Q6UW32 110 aa3.16□□□□□ -1.9
CSMD3-203ENST00000343508 C19orf73Q9NVV2 129 aa3.16□□□□□ -1.9
CSMD3-203ENST00000343508 BSNQ9UPA5 3926 aa3.16□□□□□ -1.9
CSMD3-203ENST00000343508 C15orf56Q8N910 161 aa3.15□□□□□ -1.9
CSMD3-203ENST00000343508 DMXL2Q8TDJ6 3036 aa3.15□□□□□ -1.91
CSMD3-203ENST00000343508 M0R2N4 97 aa3.15□□□□□ -1.91
CSMD3-203ENST00000343508 MUC6Q6W4X9 2439 aa3.15□□□□□ -1.91
CSMD3-203ENST00000343508 A0A096LNT2 108 aa3.15□□□□□ -1.91
CSMD3-203ENST00000343508 SPRR4Q96PI1 79 aa3.15□□□□□ -1.91
CSMD3-203ENST00000343508 LINC00313P59037 77 aa3.15□□□□□ -1.91
CSMD3-203ENST00000343508 C7orf65Q6ZTY9 151 aa3.15□□□□□ -1.91
CSMD3-203ENST00000343508 HIVEP2P31629 2446 aa3.14□□□□□ -1.91
CSMD3-203ENST00000343508 TNRC18O15417 2968 aaPredicted RBP3.14□□□□□ -1.91
CSMD3-203ENST00000343508 FAM168BA1KXE4 195 aa3.14□□□□□ -1.91
CSMD3-203ENST00000343508 MRPL34Q9BQ48 92 aaKnown RBP3.14□□□□□ -1.91
CSMD3-203ENST00000343508 CR1P17927 2039 aa3.14□□□□□ -1.91
CSMD3-203ENST00000343508 RETNLBQ9BQ08 111 aa3.14□□□□□ -1.91
CSMD3-203ENST00000343508 FP248Q71RG6 208 aaPredicted RBP3.13□□□□□ -1.91
CSMD3-203ENST00000343508 CDC42SE1Q9NRR8 79 aa3.13□□□□□ -1.91
CSMD3-203ENST00000343508 ANKRD17O75179 2603 aaKnown RBP3.13□□□□□ -1.91
CSMD3-203ENST00000343508 PHF5AQ7RTV0 110 aaKnown RBP3.13□□□□□ -1.91
CSMD3-203ENST00000343508 SPG11Q96JI7 2443 aa3.13□□□□□ -1.91
CSMD3-203ENST00000343508 UQCR11O14957 56 aa3.12□□□□□ -1.91
CSMD3-203ENST00000343508 LINC00588Q9Y4M8 146 aa3.12□□□□□ -1.91
CSMD3-203ENST00000343508 FAM229BQ4G0N7 80 aa3.12□□□□□ -1.91
CSMD3-203ENST00000343508 NBEAQ8NFP9 2946 aa3.12□□□□□ -1.91
CSMD3-203ENST00000343508 IGLV5-37A0A075B6J1 123 aa3.12□□□□□ -1.91
CSMD3-203ENST00000343508 MGAQ8IWI9 3026 aa3.12□□□□□ -1.91
CSMD3-203ENST00000343508 KALRNO60229 2985 aa3.12□□□□□ -1.91
CSMD3-203ENST00000343508 DSPP15924 2871 aaKnown RBP3.12□□□□□ -1.91
CSMD3-203ENST00000343508 IGLV5-52A0A0A0MRZ9 124 aa3.12□□□□□ -1.91
CSMD3-203ENST00000343508 A0A1W2PNM2 257 aa3.11□□□□□ -1.91
CSMD3-203ENST00000343508 OXTP01178 125 aa3.11□□□□□ -1.91
CSMD3-203ENST00000343508 LCA10Q71F78 164 aa3.11□□□□□ -1.91
CSMD3-203ENST00000343508 DSCR10P59022 87 aa3.1□□□□□ -1.91
CSMD3-203ENST00000343508 FAM229AH3BQW9 127 aa3.1□□□□□ -1.91
CSMD3-203ENST00000343508 Q75L30 129 aa3.1□□□□□ -1.91
CSMD3-203ENST00000343508 A0A1B0GVX0 72 aa3.1□□□□□ -1.91
CSMD3-203ENST00000343508 IGLV7-46A0A075B6I9 117 aa3.1□□□□□ -1.91
CSMD3-203ENST00000343508 FAM208BQ5VWN6 2430 aa3.1□□□□□ -1.91
CSMD3-203ENST00000343508 PTPN13Q12923 2485 aa3.09□□□□□ -1.91
CSMD3-203ENST00000343508 CSMD2Q7Z408 3487 aa3.09□□□□□ -1.91
CSMD3-203ENST00000343508 C8orf17Q9NRJ1 99 aa3.09□□□□□ -1.91
CSMD3-203ENST00000343508 IGKV2D-30A0A075B6S6 120 aa3.09□□□□□ -1.92
CSMD3-203ENST00000343508 IGKV2-30P06310 120 aa3.09□□□□□ -1.92
CSMD3-203ENST00000343508 SPINK1P00995 79 aa3.09□□□□□ -1.92
CSMD3-203ENST00000343508 LRBAP50851 2863 aa3.08□□□□□ -1.92
CSMD3-203ENST00000343508 MIR22HGQ0VDD5 57 aa3.08□□□□□ -1.92
CSMD3-203ENST00000343508 ATMQ13315 3056 aa3.08□□□□□ -1.92
CSMD3-203ENST00000343508 TLN1Q9Y490 2541 aaKnown RBP3.08□□□□□ -1.92
CSMD3-203ENST00000343508 ATRXP46100 2492 aa3.07□□□□□ -1.92
CSMD3-203ENST00000343508 C2CD3Q4AC94 2353 aa3.07□□□□□ -1.92
CSMD3-203ENST00000343508 Q8NDZ9 215 aa3.07□□□□□ -1.92
CSMD3-203ENST00000343508 MDFIQ99750 246 aa3.07□□□□□ -1.92
CSMD3-203ENST00000343508 ABCA2Q9BZC7 2435 aa3.07□□□□□ -1.92
CSMD3-203ENST00000343508 C1orf134Q5TEV5 83 aa3.06□□□□□ -1.92
CSMD3-203ENST00000343508 CNBPP62633 177 aaKnown RBP3.06□□□□□ -1.92
CSMD3-203ENST00000343508 CHTF8P0CG12 524 aa3.06□□□□□ -1.92
CSMD3-203ENST00000343508 KRTAP10-3P60369 221 aa3.06□□□□□ -1.92
CSMD3-203ENST00000343508 Q8N9P0 234 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-203ENST00000343508 SPRR1AP35321 89 aa3.05□□□□□ -1.92
CSMD3-203ENST00000343508 LY6G6CO95867 125 aa3.05□□□□□ -1.92
CSMD3-203ENST00000343508 Q5VV11 94 aa3.05□□□□□ -1.92
CSMD3-203ENST00000343508 NBDYA0A0U1RRE5 68 aa3.05□□□□□ -1.92
CSMD3-203ENST00000343508 ZNF861PO60384 105 aa3.05□□□□□ -1.92
CSMD3-203ENST00000343508 RTL8CO15255 209 aa3.04□□□□□ -1.92
CSMD3-203ENST00000343508 VPS13CQ709C8 3753 aa3.04□□□□□ -1.92
CSMD3-203ENST00000343508 C9orf163Q8N9P6 203 aa3.04□□□□□ -1.92
CSMD3-203ENST00000343508 CUBNO60494 3623 aa3.04□□□□□ -1.92
CSMD3-203ENST00000343508 SSBP3-AS1Q7Z2R9 100 aa3.04□□□□□ -1.92
CSMD3-203ENST00000343508 SPACA4Q8TDM5 124 aa3.04□□□□□ -1.92
CSMD3-203ENST00000343508 RBM12B-AS1Q9P1G2 102 aa3.04□□□□□ -1.92
CSMD3-203ENST00000343508 ANKRD11Q6UB99 2663 aaPredicted RBP3.04□□□□□ -1.92
CSMD3-203ENST00000343508 TACC2O95359 2948 aa3.03□□□□□ -1.92
CSMD3-203ENST00000343508 IGLV8-61A0A075B6I0 122 aa3.03□□□□□ -1.92
CSMD3-203ENST00000343508 KRTAP1-3Q8IUG1 177 aa3.03□□□□□ -1.92
CSMD3-203ENST00000343508 A0A1W2PNN7 141 aa3.03□□□□□ -1.92
CSMD3-203ENST00000343508 A0A0G2JQZ4 141 aa3.03□□□□□ -1.92
CSMD3-203ENST00000343508 LINC01558Q9Y6Z2 57 aa3.03□□□□□ -1.92
CSMD3-203ENST00000343508 KRTAP10-11P60412 298 aa3.02□□□□□ -1.93
CSMD3-203ENST00000343508 ACACBO00763 2458 aa3.02□□□□□ -1.93
CSMD3-203ENST00000343508 DMXL1Q9Y485 3027 aa3.02□□□□□ -1.93
CSMD3-203ENST00000343508 Q96NJ1 140 aa3.02□□□□□ -1.93
CSMD3-203ENST00000343508 TTC28Q96AY4 2481 aa3.02□□□□□ -1.93
CSMD3-203ENST00000343508 IGF2RP11717 2491 aa3.01□□□□□ -1.93
CSMD3-203ENST00000343508 FN1P02751 2386 aaKnown RBP3.01□□□□□ -1.93
CSMD3-203ENST00000343508 NAV2Q8IVL1 2488 aa3.01□□□□□ -1.93
CSMD3-203ENST00000343508 TYMSOSQ8TAI1 123 aa3.01□□□□□ -1.93
CSMD3-203ENST00000343508 LINC00472Q9H8W2 130 aa3.01□□□□□ -1.93
CSMD3-203ENST00000343508 MYO9AB2RTY4 2548 aa3□□□□□ -1.93
CSMD3-203ENST00000343508 LRRK2Q5S007 2527 aa3□□□□□ -1.93
CSMD3-203ENST00000343508 TNP2Q05952 138 aa3□□□□□ -1.93
CSMD3-203ENST00000343508 SPINT4Q6UDR6 99 aa2.99□□□□□ -1.93
CSMD3-203ENST00000343508 LCE6AA0A183 80 aa2.99□□□□□ -1.93
CSMD3-203ENST00000343508 SONP18583 2426 aaKnown RBP2.99□□□□□ -1.93
CSMD3-203ENST00000343508 MMP24-AS1A0A0U1RRL7 71 aa2.99□□□□□ -1.93
CSMD3-203ENST00000343508 TLN2Q9Y4G6 2542 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 141.9 ms