RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 C8orf17Q9NRJ1 99 aa8.43□□□□□ -1.06
COL3A1-201ENST00000304636 DNAH12Q6ZR08 3092 aa8.42□□□□□ -1.06
COL3A1-201ENST00000304636 UQCR11O14957 56 aa8.42□□□□□ -1.06
COL3A1-201ENST00000304636 A0A096LNT2 108 aa8.41□□□□□ -1.06
COL3A1-201ENST00000304636 SPANXA2-OT1Q8N9U9 137 aa8.4□□□□□ -1.06
COL3A1-201ENST00000304636 A0A1W2PNM2 257 aa8.4□□□□□ -1.07
COL3A1-201ENST00000304636 KTN1-AS1Q86SY8 53 aa8.4□□□□□ -1.07
COL3A1-201ENST00000304636 FAM104AQ969W3 186 aa8.4□□□□□ -1.07
COL3A1-201ENST00000304636 ANKRD17O75179 2603 aaKnown RBP8.39□□□□□ -1.07
COL3A1-201ENST00000304636 A0A1B0GVX0 72 aa8.38□□□□□ -1.07
COL3A1-201ENST00000304636 MTORP42345 2549 aa8.38□□□□□ -1.07
COL3A1-201ENST00000304636 IGLV5-48A0A075B6I7 105 aa8.37□□□□□ -1.07
COL3A1-201ENST00000304636 F8P00451 2351 aa8.37□□□□□ -1.07
COL3A1-201ENST00000304636 OCR1Q9BZK8 76 aa8.37□□□□□ -1.07
COL3A1-201ENST00000304636 A0A0G2JQZ4 141 aa8.35□□□□□ -1.07
COL3A1-201ENST00000304636 A0A1W2PNN7 141 aa8.35□□□□□ -1.07
COL3A1-201ENST00000304636 KRTAP24-1Q3LI83 254 aa8.35□□□□□ -1.07
COL3A1-201ENST00000304636 POLQO75417 2590 aa8.34□□□□□ -1.07
COL3A1-201ENST00000304636 MIR22HGQ0VDD5 57 aa8.34□□□□□ -1.07
COL3A1-201ENST00000304636 TYMSOSQ8TAI1 123 aa8.34□□□□□ -1.07
COL3A1-201ENST00000304636 Q96NJ1 140 aa8.34□□□□□ -1.07
COL3A1-201ENST00000304636 Q1T7F1 81 aa8.34□□□□□ -1.07
COL3A1-201ENST00000304636 BPTFQ12830 3046 aa8.34□□□□□ -1.08
COL3A1-201ENST00000304636 CHD8Q9HCK8 2581 aa8.33□□□□□ -1.08
COL3A1-201ENST00000304636 SPTBN4Q9H254 2564 aa8.32□□□□□ -1.08
COL3A1-201ENST00000304636 LCA10Q71F78 164 aa8.31□□□□□ -1.08
COL3A1-201ENST00000304636 CDC42SE1Q9NRR8 79 aa8.3□□□□□ -1.08
COL3A1-201ENST00000304636 IGLV5-37A0A075B6J1 123 aa8.29□□□□□ -1.08
COL3A1-201ENST00000304636 DSCR10P59022 87 aa8.29□□□□□ -1.08
COL3A1-201ENST00000304636 Q5XG85 94 aa8.28□□□□□ -1.08
COL3A1-201ENST00000304636 CRIPTQ9P021 101 aa8.28□□□□□ -1.08
COL3A1-201ENST00000304636 PRRC2CQ9Y520 2896 aaKnown RBP8.28□□□□□ -1.08
COL3A1-201ENST00000304636 KRTAP10-3P60369 221 aa8.28□□□□□ -1.08
COL3A1-201ENST00000304636 KRTAP10-11P60412 298 aa8.28□□□□□ -1.08
COL3A1-201ENST00000304636 APLNQ9ULZ1 77 aa8.28□□□□□ -1.08
COL3A1-201ENST00000304636 ZNF861PO60384 105 aa8.27□□□□□ -1.09
COL3A1-201ENST00000304636 SPRR4Q96PI1 79 aa8.26□□□□□ -1.09
COL3A1-201ENST00000304636 C9orf163Q8N9P6 203 aa8.26□□□□□ -1.09
COL3A1-201ENST00000304636 CYSTM1Q9H1C7 97 aa8.23□□□□□ -1.09
COL3A1-201ENST00000304636 ACANP16112 2415 aa8.23□□□□□ -1.09
COL3A1-201ENST00000304636 CNBPP62633 177 aaKnown RBP8.23□□□□□ -1.09
COL3A1-201ENST00000304636 CEP350Q5VT06 3117 aa8.22□□□□□ -1.09
COL3A1-201ENST00000304636 CASC10Q5T4H9 136 aa8.21□□□□□ -1.1
COL3A1-201ENST00000304636 FP248Q71RG6 208 aaPredicted RBP8.19□□□□□ -1.1
COL3A1-201ENST00000304636 IGLV7-46A0A075B6I9 117 aa8.18□□□□□ -1.1
COL3A1-201ENST00000304636 K7EIL1 84 aa8.17□□□□□ -1.1
COL3A1-201ENST00000304636 FAM229BQ4G0N7 80 aa8.16□□□□□ -1.1
COL3A1-201ENST00000304636 Q75L30 129 aa8.16□□□□□ -1.1
COL3A1-201ENST00000304636 A0A087WTM6 91 aa8.16□□□□□ -1.1
COL3A1-201ENST00000304636 ANAPC11Q9NYG5 84 aa8.15□□□□□ -1.1
COL3A1-201ENST00000304636 PSORS1C2Q9UIG4 136 aa8.14□□□□□ -1.11
COL3A1-201ENST00000304636 KRTAP1-3Q8IUG1 177 aa8.14□□□□□ -1.11
COL3A1-201ENST00000304636 IGLV7-43P04211 117 aa8.13□□□□□ -1.11
COL3A1-201ENST00000304636 Q8NDZ9 215 aa8.13□□□□□ -1.11
COL3A1-201ENST00000304636 PRR26Q8N8Z3 221 aa8.11□□□□□ -1.11
COL3A1-201ENST00000304636 UTRNP46939 3433 aa8.11□□□□□ -1.11
COL3A1-201ENST00000304636 LINC00304Q8N9R0 145 aa8.11□□□□□ -1.11
COL3A1-201ENST00000304636 Q8N9P0 234 aaPredicted RBP8.1□□□□□ -1.11
COL3A1-201ENST00000304636 LINC01558Q9Y6Z2 57 aa8.08□□□□□ -1.12
COL3A1-201ENST00000304636 KRTAP1-1Q07627 177 aa8.08□□□□□ -1.12
COL3A1-201ENST00000304636 RBM12B-AS1Q9P1G2 102 aa8.07□□□□□ -1.12
COL3A1-201ENST00000304636 A0A0D9SG42 100 aa8.07□□□□□ -1.12
COL3A1-201ENST00000304636 OXTP01178 125 aa8.07□□□□□ -1.12
COL3A1-201ENST00000304636 SPRR1AP35321 89 aa8.07□□□□□ -1.12
COL3A1-201ENST00000304636 CHD7Q9P2D1 2997 aa8.06□□□□□ -1.12
COL3A1-201ENST00000304636 CR1P17927 2039 aa8.05□□□□□ -1.12
COL3A1-201ENST00000304636 C9orf92A6NGG3 77 aa8.05□□□□□ -1.12
COL3A1-201ENST00000304636 MMP24-AS1A0A0U1RRL7 71 aa8.04□□□□□ -1.12
COL3A1-201ENST00000304636 WWC2-AS2Q96NR7 200 aa8.03□□□□□ -1.12
COL3A1-201ENST00000304636 Q8N1X5 172 aa8.03□□□□□ -1.12
COL3A1-201ENST00000304636 Q5VV11 94 aa8.02□□□□□ -1.12
COL3A1-201ENST00000304636 PCNTO95613 3336 aa8.02□□□□□ -1.13
COL3A1-201ENST00000304636 LINC01554Q52M75 96 aa8.02□□□□□ -1.13
COL3A1-201ENST00000304636 COX6B2Q6YFQ2 88 aa8.02□□□□□ -1.13
COL3A1-201ENST00000304636 C5orf42Q9H799 3197 aa8.01□□□□□ -1.13
COL3A1-201ENST00000304636 HRES1P13985 223 aa8.01□□□□□ -1.13
COL3A1-201ENST00000304636 LUZP6Q538Z0 58 aa8□□□□□ -1.13
COL3A1-201ENST00000304636 A0A0C4DFX4 3053 aa7.99□□□□□ -1.13
COL3A1-201ENST00000304636 FASNP49327 2511 aaKnown RBP7.98□□□□□ -1.13
COL3A1-201ENST00000304636 LINC00472Q9H8W2 130 aa7.96□□□□□ -1.13
COL3A1-201ENST00000304636 EPG5Q9HCE0 2579 aa7.96□□□□□ -1.14
COL3A1-201ENST00000304636 SPRR1BP22528 89 aa7.95□□□□□ -1.14
COL3A1-201ENST00000304636 CHD9Q3L8U1 2897 aa7.93□□□□□ -1.14
COL3A1-201ENST00000304636 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.92□□□□□ -1.14
COL3A1-201ENST00000304636 A0A1B0GU33 70 aa7.91□□□□□ -1.14
COL3A1-201ENST00000304636 H3BS24 57 aa7.9□□□□□ -1.14
COL3A1-201ENST00000304636 J3QL48 77 aa7.9□□□□□ -1.14
COL3A1-201ENST00000304636 SPINK7P58062 85 aa7.89□□□□□ -1.15
COL3A1-201ENST00000304636 TNP2Q05952 138 aa7.89□□□□□ -1.15
COL3A1-201ENST00000304636 KRTAP26-1Q6PEX3 210 aa7.89□□□□□ -1.15
COL3A1-201ENST00000304636 PRAC1Q96KF2 57 aa7.87□□□□□ -1.15
COL3A1-201ENST00000304636 SMR3BP02814 79 aaPredicted RBP7.85□□□□□ -1.15
COL3A1-201ENST00000304636 FLNAP21333 2647 aaKnown RBP7.85□□□□□ -1.15
COL3A1-201ENST00000304636 Q5W150 140 aa7.84□□□□□ -1.15
COL3A1-201ENST00000304636 HTTP42858 3142 aa7.84□□□□□ -1.15
COL3A1-201ENST00000304636 PLAC8Q9NZF1 115 aa7.83□□□□□ -1.16
COL3A1-201ENST00000304636 USP24Q9UPU5 2620 aa7.83□□□□□ -1.16
COL3A1-201ENST00000304636 ZCCHC13Q8WW36 166 aaKnown RBP7.81□□□□□ -1.16
COL3A1-201ENST00000304636 CFAP54Q96N23 3096 aa7.79□□□□□ -1.16
COL3A1-201ENST00000304636 KRTAP4-16G5E9R7 235 aaPredicted RBP7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms