RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ITPR2Q14571 2701 aa0.84□□□□□ -2.28
CD44-239ENST00000639002 UBR1Q8IWV7 1749 aa0.84□□□□□ -2.28
CD44-239ENST00000639002 LRRIQ1Q96JM4 1722 aa0.84□□□□□ -2.28
CD44-239ENST00000639002 PI4KAP42356 2102 aa0.83□□□□□ -2.28
CD44-239ENST00000639002 INTS1Q8N201 2190 aaKnown RBP0.83□□□□□ -2.28
CD44-239ENST00000639002 F8P00451 2351 aa0.83□□□□□ -2.28
CD44-239ENST00000639002 PTPN23Q9H3S7 1636 aa0.83□□□□□ -2.28
CD44-239ENST00000639002 TRAV1-2A0A0B4J238 106 aa0.83□□□□□ -2.28
CD44-239ENST00000639002 H7BZZ5 65 aa0.83□□□□□ -2.28
CD44-239ENST00000639002 ALKAL2Q6UX46 152 aa0.83□□□□□ -2.28
CD44-239ENST00000639002 DEFB123Q8N688 67 aa0.83□□□□□ -2.28
CD44-239ENST00000639002 LINC01558Q9Y6Z2 57 aa0.83□□□□□ -2.28
CD44-239ENST00000639002 SCN7AQ01118 1682 aa0.83□□□□□ -2.28
CD44-239ENST00000639002 LRRC37A2A6NM11 1700 aa0.83□□□□□ -2.28
CD44-239ENST00000639002 ERICH3Q5RHP9 1530 aa0.83□□□□□ -2.28
CD44-239ENST00000639002 KDM5DQ9BY66 1539 aa0.83□□□□□ -2.28
CD44-239ENST00000639002 DMXL2Q8TDJ6 3036 aa0.83□□□□□ -2.28
CD44-239ENST00000639002 ARHGEF5Q12774 1597 aa0.83□□□□□ -2.28
CD44-239ENST00000639002 SVEP1Q4LDE5 3571 aa0.82□□□□□ -2.28
CD44-239ENST00000639002 FREM2Q5SZK8 3169 aa0.82□□□□□ -2.28
CD44-239ENST00000639002 NLRP1Q9C000 1473 aa0.82□□□□□ -2.28
CD44-239ENST00000639002 WDFY3Q8IZQ1 3526 aa0.82□□□□□ -2.28
CD44-239ENST00000639002 TRGV1A0A0A0MS02 117 aa0.82□□□□□ -2.28
CD44-239ENST00000639002 FAM223BA6NKX1 122 aa0.82□□□□□ -2.28
CD44-239ENST00000639002 LEPROTL1O95214 131 aa0.82□□□□□ -2.28
CD44-239ENST00000639002 HMGN2P05204 90 aaKnown RBP0.82□□□□□ -2.28
CD44-239ENST00000639002 LYNX1P0DP58 116 aa0.82□□□□□ -2.28
CD44-239ENST00000639002 S100A3P33764 101 aa0.82□□□□□ -2.28
CD44-239ENST00000639002 CFAP126Q5VTH2 177 aa0.82□□□□□ -2.28
CD44-239ENST00000639002 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.82□□□□□ -2.28
CD44-239ENST00000639002 LINC00643Q86TS7 51 aa0.82□□□□□ -2.28
CD44-239ENST00000639002 FAM223AQ8IWN6 122 aa0.82□□□□□ -2.28
CD44-239ENST00000639002 SMIM11BQ8TCY0 68 aa0.82□□□□□ -2.28
CD44-239ENST00000639002 BPESC1Q9GZL8 116 aa0.82□□□□□ -2.28
CD44-239ENST00000639002 CSMD2Q7Z408 3487 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 COL4A6Q14031 1691 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 ANKARQ7Z5J8 1434 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 DMXL1Q9Y485 3027 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 CRYBG1Q9Y4K1 1723 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 POLA1P09884 1462 aaPredicted RBP0.81□□□□□ -2.28
CD44-239ENST00000639002 CCDC141Q6ZP82 1450 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 DOCK11Q5JSL3 2073 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 ABCC1P33527 1531 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 KCPQ6ZWJ8 1503 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 A0A087WTM6 91 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 C7orf77A4D0Y5 90 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 D6R8Y8 96 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 F8WEM9 126 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 M0R3E3 92 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 ARMS2P0C7Q2 107 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 GCHFRP30047 84 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 TDRG1Q3Y452 100 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 NMSQ5H8A3 153 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 MUSTN1Q8IVN3 82 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 PRR15LQ9BU68 103 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 SMCO4Q9NRQ5 59 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 HIGD1BQ9P298 99 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 SPAG17Q6Q759 2223 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 C5P01031 1676 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 PKD1L3Q7Z443 1732 aa0.81□□□□□ -2.28
CD44-239ENST00000639002 NRXN1Q9ULB1 1477 aa0.8□□□□□ -2.28
CD44-239ENST00000639002 ZNF236Q9UL36 1845 aa0.8□□□□□ -2.28
CD44-239ENST00000639002 USH2AO75445 5202 aa0.8□□□□□ -2.28
CD44-239ENST00000639002 CFAP74Q9C0B2 1584 aa0.8□□□□□ -2.28
CD44-239ENST00000639002 DIP2BQ9P265 1576 aa0.8□□□□□ -2.28
CD44-239ENST00000639002 SMIM31A0A1B0GVY4 71 aa0.8□□□□□ -2.28
CD44-239ENST00000639002 PDCD5O14737 125 aa0.8□□□□□ -2.28
CD44-239ENST00000639002 PIN1P1O15428 100 aa0.8□□□□□ -2.28
CD44-239ENST00000639002 DEFA5Q01523 94 aa0.8□□□□□ -2.28
CD44-239ENST00000639002 PLAC4Q8WY50 150 aa0.8□□□□□ -2.28
CD44-239ENST00000639002 Q96NJ1 140 aa0.8□□□□□ -2.28
CD44-239ENST00000639002 MYO15AQ9UKN7 3530 aa0.8□□□□□ -2.28
CD44-239ENST00000639002 SHPRHQ149N8 1683 aa0.8□□□□□ -2.28
CD44-239ENST00000639002 KNDC1Q76NI1 1749 aa0.8□□□□□ -2.28
CD44-239ENST00000639002 TET1Q8NFU7 2136 aa0.8□□□□□ -2.28
CD44-239ENST00000639002 KIAA0100Q14667 2235 aaKnown RBP0.8□□□□□ -2.28
CD44-239ENST00000639002 LRRC9Q6ZRR7 1453 aa0.8□□□□□ -2.28
CD44-239ENST00000639002 NBASA2RRP1 2371 aa0.79□□□□□ -2.28
CD44-239ENST00000639002 CUX1P39880 1505 aa0.79□□□□□ -2.28
CD44-239ENST00000639002 CDK13Q14004 1512 aaKnown RBP0.79□□□□□ -2.28
CD44-239ENST00000639002 ZC3H13Q5T200 1668 aaKnown RBP0.79□□□□□ -2.28
CD44-239ENST00000639002 LTN1O94822 1766 aa0.79□□□□□ -2.28
CD44-239ENST00000639002 MYMXA0A1B0GTQ4 84 aa0.79□□□□□ -2.28
CD44-239ENST00000639002 CEBPZOSA8MTT3 80 aa0.79□□□□□ -2.28
CD44-239ENST00000639002 H3BUT2 72 aa0.79□□□□□ -2.28
CD44-239ENST00000639002 ZNF137PP52743 207 aa0.79□□□□□ -2.28
CD44-239ENST00000639002 GNGT1P63211 74 aa0.79□□□□□ -2.28
CD44-239ENST00000639002 WFDC2Q14508 124 aa0.79□□□□□ -2.28
CD44-239ENST00000639002 PLGLAQ15195 96 aa0.79□□□□□ -2.28
CD44-239ENST00000639002 Q6ZRX8 168 aa0.79□□□□□ -2.28
CD44-239ENST00000639002 FDCSPQ8NFU4 85 aa0.79□□□□□ -2.28
CD44-239ENST00000639002 TMEM263Q8WUH6 116 aaKnown RBP0.79□□□□□ -2.28
CD44-239ENST00000639002 KRTAP2-1Q9BYU5 128 aa0.79□□□□□ -2.28
CD44-239ENST00000639002 LINC00846Q9NV44 126 aa0.79□□□□□ -2.28
CD44-239ENST00000639002 ANKRD36A6QL64 1941 aa0.79□□□□□ -2.28
CD44-239ENST00000639002 CCDC88BA6NC98 1476 aa0.79□□□□□ -2.28
CD44-239ENST00000639002 NWD1Q149M9 1564 aa0.79□□□□□ -2.28
CD44-239ENST00000639002 ZZEF1O43149 2961 aa0.78□□□□□ -2.28
CD44-239ENST00000639002 MYO5CQ9NQX4 1742 aa0.78□□□□□ -2.28
CD44-239ENST00000639002 RGPD2P0DJD1 1756 aa0.78□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms