RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 C16orf90A8MZG2 172 aa4.33□□□□□ -1.72
SCN1A-212ENST00000636194 DEFB1P60022 68 aa4.33□□□□□ -1.72
SCN1A-212ENST00000636194 LOC101927531A0A1B0GV80 90 aa4.33□□□□□ -1.72
SCN1A-212ENST00000636194 UNQ6190/PRO20217Q6UXQ8 127 aa4.32□□□□□ -1.72
SCN1A-212ENST00000636194 Q8NBF4 154 aa4.32□□□□□ -1.72
SCN1A-212ENST00000636194 CENPEQ02224 2701 aa4.31□□□□□ -1.72
SCN1A-212ENST00000636194 PLAC4Q8WY50 150 aa4.31□□□□□ -1.72
SCN1A-212ENST00000636194 KLLNB2CW77 178 aa4.31□□□□□ -1.72
SCN1A-212ENST00000636194 MIR22HGQ0VDD5 57 aa4.31□□□□□ -1.72
SCN1A-212ENST00000636194 LINC00574Q9H8X3 128 aa4.31□□□□□ -1.72
SCN1A-212ENST00000636194 KRTAP27-1Q3LI81 207 aa4.31□□□□□ -1.72
SCN1A-212ENST00000636194 LINC01006Q8NI28 216 aa4.31□□□□□ -1.72
SCN1A-212ENST00000636194 Q8NA96 180 aa4.3□□□□□ -1.72
SCN1A-212ENST00000636194 LMO4P61968 165 aa4.3□□□□□ -1.72
SCN1A-212ENST00000636194 SPATA3Q8NHX4 192 aa4.3□□□□□ -1.72
SCN1A-212ENST00000636194 U3KQA8 63 aa4.3□□□□□ -1.72
SCN1A-212ENST00000636194 RPS28P62857 69 aaKnown RBP4.3□□□□□ -1.72
SCN1A-212ENST00000636194 CDIP1Q9H305 208 aa4.3□□□□□ -1.72
SCN1A-212ENST00000636194 NOTCH1P46531 2555 aa4.3□□□□□ -1.72
SCN1A-212ENST00000636194 STAB2Q8WWQ8 2551 aa4.3□□□□□ -1.72
SCN1A-212ENST00000636194 ZNF80P51504 273 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-212ENST00000636194 PROK1P58294 105 aa4.3□□□□□ -1.72
SCN1A-212ENST00000636194 GDF5OSQ5U4N7 250 aa4.3□□□□□ -1.72
SCN1A-212ENST00000636194 CYP4F30PQ9H0H9 118 aa4.3□□□□□ -1.72
SCN1A-212ENST00000636194 KIF25-AS1Q9Y6Z4 181 aa4.29□□□□□ -1.72
SCN1A-212ENST00000636194 Q6ZQT0 140 aa4.29□□□□□ -1.72
SCN1A-212ENST00000636194 SMIM29Q86T20 159 aa4.29□□□□□ -1.72
SCN1A-212ENST00000636194 BCE1O60756 84 aa4.28□□□□□ -1.72
SCN1A-212ENST00000636194 SPRNQ5BIV9 151 aa4.28□□□□□ -1.72
SCN1A-212ENST00000636194 C9orf116Q5BN46 136 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-212ENST00000636194 PRO3102Q9H379 93 aa4.28□□□□□ -1.72
SCN1A-212ENST00000636194 A0A087WYN8 130 aa4.28□□□□□ -1.72
SCN1A-212ENST00000636194 IGLV6-57P01721 117 aa4.28□□□□□ -1.72
SCN1A-212ENST00000636194 COL4A5P29400 1685 aa4.28□□□□□ -1.72
SCN1A-212ENST00000636194 ELOF1P60002 83 aaKnown RBP4.28□□□□□ -1.72
SCN1A-212ENST00000636194 C11orf1Q9H5F2 150 aa4.27□□□□□ -1.73
SCN1A-212ENST00000636194 COL4A6Q14031 1691 aa4.27□□□□□ -1.73
SCN1A-212ENST00000636194 M0R2T5 61 aa4.27□□□□□ -1.73
SCN1A-212ENST00000636194 SMCR5Q8TEV8 140 aa4.27□□□□□ -1.73
SCN1A-212ENST00000636194 A0A0D9SG42 100 aa4.27□□□□□ -1.73
SCN1A-212ENST00000636194 CNFNQ9BYD5 112 aa4.27□□□□□ -1.73
SCN1A-212ENST00000636194 IGLV5-37A0A075B6J1 123 aa4.26□□□□□ -1.73
SCN1A-212ENST00000636194 SMIM1B2RUZ4 78 aa4.26□□□□□ -1.73
SCN1A-212ENST00000636194 RPL37AP61513 92 aaKnown RBP4.26□□□□□ -1.73
SCN1A-212ENST00000636194 MAPKAPK5-AS1Q8N8E1 139 aa4.26□□□□□ -1.73
SCN1A-212ENST00000636194 FLNBO75369 2602 aaKnown RBP4.26□□□□□ -1.73
SCN1A-212ENST00000636194 BRWD1-AS2P59051 145 aa4.25□□□□□ -1.73
SCN1A-212ENST00000636194 C22orf24Q9Y442 160 aa4.25□□□□□ -1.73
SCN1A-212ENST00000636194 PRR3P79522 188 aaKnown RBP4.25□□□□□ -1.73
SCN1A-212ENST00000636194 LINC00242Q5T6M2 205 aa4.25□□□□□ -1.73
SCN1A-212ENST00000636194 POLR2KP53803 58 aaKnown RBP4.25□□□□□ -1.73
SCN1A-212ENST00000636194 ZNF575Q86XF7 245 aa4.25□□□□□ -1.73
SCN1A-212ENST00000636194 C11orf72Q8NBR9 251 aa4.25□□□□□ -1.73
SCN1A-212ENST00000636194 LINC00588Q9Y4M8 146 aa4.25□□□□□ -1.73
SCN1A-212ENST00000636194 IGLV1-51P01701 117 aa4.25□□□□□ -1.73
SCN1A-212ENST00000636194 FHL3Q13643 280 aa4.24□□□□□ -1.73
SCN1A-212ENST00000636194 IGLV5-39A0A0G2JS06 123 aa4.24□□□□□ -1.73
SCN1A-212ENST00000636194 IGLV1-40P01703 118 aa4.24□□□□□ -1.73
SCN1A-212ENST00000636194 CD164Q04900 197 aa4.23□□□□□ -1.73
SCN1A-212ENST00000636194 C4orf26Q17RF5 130 aa4.23□□□□□ -1.73
SCN1A-212ENST00000636194 BRI3O95415 125 aa4.23□□□□□ -1.73
SCN1A-212ENST00000636194 HRES1P13985 223 aa4.23□□□□□ -1.73
SCN1A-212ENST00000636194 IGLV5-48A0A075B6I7 105 aa4.22□□□□□ -1.73
SCN1A-212ENST00000636194 IGIPA6NJ69 53 aa4.22□□□□□ -1.73
SCN1A-212ENST00000636194 LINC00304Q8N9R0 145 aa4.22□□□□□ -1.73
SCN1A-212ENST00000636194 RTL8CO15255 209 aa4.22□□□□□ -1.73
SCN1A-212ENST00000636194 Q6ZS46 218 aa4.22□□□□□ -1.73
SCN1A-212ENST00000636194 ITPR3Q14573 2671 aa4.22□□□□□ -1.73
SCN1A-212ENST00000636194 C10orf99Q6UWK7 81 aa4.22□□□□□ -1.73
SCN1A-212ENST00000636194 A8MWP4 228 aa4.21□□□□□ -1.73
SCN1A-212ENST00000636194 TLX1NBP0CAT3 122 aa4.21□□□□□ -1.73
SCN1A-212ENST00000636194 C2orf91Q6ZV80 131 aa4.21□□□□□ -1.73
SCN1A-212ENST00000636194 C16orf95Q9H693 158 aa4.21□□□□□ -1.73
SCN1A-212ENST00000636194 LCA10Q71F78 164 aa4.21□□□□□ -1.74
SCN1A-212ENST00000636194 MUC22E2RYF6 1773 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-212ENST00000636194 Q1T7F1 81 aa4.21□□□□□ -1.74
SCN1A-212ENST00000636194 H3BNG1 76 aa4.21□□□□□ -1.74
SCN1A-212ENST00000636194 COA5Q86WW8 74 aa4.21□□□□□ -1.74
SCN1A-212ENST00000636194 CHTF8P0CG12 524 aa4.2□□□□□ -1.74
SCN1A-212ENST00000636194 CRIP1P50238 77 aa4.2□□□□□ -1.74
SCN1A-212ENST00000636194 Q6ZRX8 168 aa4.2□□□□□ -1.74
SCN1A-212ENST00000636194 Q6ZRU5 148 aa4.2□□□□□ -1.74
SCN1A-212ENST00000636194 AMELXQ99217 191 aa4.2□□□□□ -1.74
SCN1A-212ENST00000636194 HELZ2Q9BYK8 2649 aaKnown RBP4.2□□□□□ -1.74
SCN1A-212ENST00000636194 TRBV7-4A0A0J9YYF1 115 aa4.2□□□□□ -1.74
SCN1A-212ENST00000636194 PRR9Q5T870 116 aa4.2□□□□□ -1.74
SCN1A-212ENST00000636194 TEP1Q99973 2627 aaKnown RBP4.2□□□□□ -1.74
SCN1A-212ENST00000636194 IGHV3OR16-9A0A0B4J2B5 98 aa4.19□□□□□ -1.74
SCN1A-212ENST00000636194 LOC110117498A0A087WWA1 95 aa4.19□□□□□ -1.74
SCN1A-212ENST00000636194 A8MTW9 85 aa4.19□□□□□ -1.74
SCN1A-212ENST00000636194 LINC00476Q8WZB0 136 aa4.19□□□□□ -1.74
SCN1A-212ENST00000636194 LINC00846Q9NV44 126 aa4.19□□□□□ -1.74
SCN1A-212ENST00000636194 WWC2-AS2Q96NR7 200 aa4.18□□□□□ -1.74
SCN1A-212ENST00000636194 ZNF580Q9UK33 172 aa4.18□□□□□ -1.74
SCN1A-212ENST00000636194 LINC00167Q96N53 147 aa4.18□□□□□ -1.74
SCN1A-212ENST00000636194 MRPL34Q9BQ48 92 aaKnown RBP4.18□□□□□ -1.74
SCN1A-212ENST00000636194 C9orf92A6NGG3 77 aa4.18□□□□□ -1.74
SCN1A-212ENST00000636194 WIPF1O43516 503 aa4.18□□□□□ -1.74
SCN1A-212ENST00000636194 IGLV5-45A0A087WSX0 123 aa4.18□□□□□ -1.74
SCN1A-212ENST00000636194 LINC00336Q6ZUF6 198 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms