RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	LINC00526	Q96FQ7	95 aa		6.28	□□□□□ -1.4
PDLIM5-223	ENST00000627587	COX11	Q9Y6N1	276 aa		6.28	□□□□□ -1.4
PDLIM5-223	ENST00000627587	PFN2	P35080	140 aa		6.28	□□□□□ -1.4
PDLIM5-223	ENST00000627587	SOSTDC1	Q6X4U4	206 aa		6.28	□□□□□ -1.4
PDLIM5-223	ENST00000627587	MIR7-3HG	Q8N6C7	128 aa		6.28	□□□□□ -1.4
PDLIM5-223	ENST00000627587	C15orf56	Q8N910	161 aa		6.28	□□□□□ -1.4
PDLIM5-223	ENST00000627587	CDK2AP2	O75956	126 aa		6.27	□□□□□ -1.41
PDLIM5-223	ENST00000627587	COX17	Q14061	63 aa		6.27	□□□□□ -1.41
PDLIM5-223	ENST00000627587	HIGD2B	Q4VC39	106 aa		6.27	□□□□□ -1.41
PDLIM5-223	ENST00000627587	TTC32	Q5I0X7	151 aa		6.27	□□□□□ -1.41
PDLIM5-223	ENST00000627587	NTN5	Q8WTR8	489 aa	Predicted RBP	6.27	□□□□□ -1.41
PDLIM5-223	ENST00000627587	C9orf118	A6NHY6	69 aa		6.26	□□□□□ -1.41
PDLIM5-223	ENST00000627587	CFC1B	P0CG36	223 aa		6.26	□□□□□ -1.41
PDLIM5-223	ENST00000627587	CFC1	P0CG37	223 aa		6.26	□□□□□ -1.41
PDLIM5-223	ENST00000627587	C10orf25	Q5T742	122 aa		6.26	□□□□□ -1.41
PDLIM5-223	ENST00000627587	UNQ6190/PRO20217	Q6UXQ8	127 aa		6.26	□□□□□ -1.41
PDLIM5-223	ENST00000627587	PPDPF	Q9H3Y8	114 aa		6.26	□□□□□ -1.41
PDLIM5-223	ENST00000627587	GVQW2	A0A096LPI5	108 aa	Predicted RBP	6.26	□□□□□ -1.41
PDLIM5-223	ENST00000627587		A0A0B4J2C4	111 aa		6.26	□□□□□ -1.41
PDLIM5-223	ENST00000627587	LCE3B	Q5TA77	95 aa		6.26	□□□□□ -1.41
PDLIM5-223	ENST00000627587	C2orf48	Q96LS8	159 aa		6.26	□□□□□ -1.41
PDLIM5-223	ENST00000627587	CAMK2N2	Q96S95	79 aa		6.26	□□□□□ -1.41
PDLIM5-223	ENST00000627587	C9orf116	Q5BN46	136 aa	Predicted RBP	6.25	□□□□□ -1.41
PDLIM5-223	ENST00000627587	HSPG2	P98160	4391 aa		6.24	□□□□□ -1.41
PDLIM5-223	ENST00000627587	NBDY	A0A0U1RRE5	68 aa		6.24	□□□□□ -1.41
PDLIM5-223	ENST00000627587	C16orf90	A8MZG2	172 aa		6.24	□□□□□ -1.41
PDLIM5-223	ENST00000627587		F8WDY8	70 aa		6.24	□□□□□ -1.41
PDLIM5-223	ENST00000627587		H3BUT2	72 aa		6.24	□□□□□ -1.41
PDLIM5-223	ENST00000627587	PRO1854	Q9UHT4	67 aa		6.24	□□□□□ -1.41
PDLIM5-223	ENST00000627587	TRBV30	A0A0K0K1B3	111 aa		6.24	□□□□□ -1.41
PDLIM5-223	ENST00000627587	NAA38	Q9BRA0	125 aa	Known RBP	6.24	□□□□□ -1.41
PDLIM5-223	ENST00000627587	C6orf48	Q9UBA6	75 aa		6.24	□□□□□ -1.41
PDLIM5-223	ENST00000627587	USP17L23	D6RBM5	183 aa		6.23	□□□□□ -1.41
PDLIM5-223	ENST00000627587	PSCA	O43653	123 aa		6.23	□□□□□ -1.41
PDLIM5-223	ENST00000627587	VAMP3	Q15836	100 aa		6.22	□□□□□ -1.41
PDLIM5-223	ENST00000627587		Q6ZRU5	148 aa		6.22	□□□□□ -1.41
PDLIM5-223	ENST00000627587	KRTAP4-5	Q9BYR2	181 aa		6.22	□□□□□ -1.41
PDLIM5-223	ENST00000627587	SND1-IT1	Q9HBX3	110 aa		6.22	□□□□□ -1.41
PDLIM5-223	ENST00000627587	LRP1B	Q9NZR2	4599 aa		6.22	□□□□□ -1.41
PDLIM5-223	ENST00000627587		A0A1W2PPM0	123 aa		6.22	□□□□□ -1.41
PDLIM5-223	ENST00000627587	TSPAN13	O95857	204 aa		6.22	□□□□□ -1.41
PDLIM5-223	ENST00000627587	TNP2	Q05952	138 aa		6.22	□□□□□ -1.41
PDLIM5-223	ENST00000627587	SYCN	Q0VAF6	134 aa		6.22	□□□□□ -1.41
PDLIM5-223	ENST00000627587	LOC107984156	A0A0G2JMH3	177 aa		6.21	□□□□□ -1.42
PDLIM5-223	ENST00000627587	LECT2	O14960	151 aa		6.21	□□□□□ -1.42
PDLIM5-223	ENST00000627587	SLPI	P03973	132 aa		6.21	□□□□□ -1.42
PDLIM5-223	ENST00000627587	FABP2	P12104	132 aa		6.21	□□□□□ -1.42
PDLIM5-223	ENST00000627587	WFDC2	Q14508	124 aa		6.21	□□□□□ -1.42
PDLIM5-223	ENST00000627587	ARL17A	Q8IVW1	177 aa		6.21	□□□□□ -1.42
PDLIM5-223	ENST00000627587		Q8N1X5	172 aa		6.21	□□□□□ -1.42
PDLIM5-223	ENST00000627587		H7C2G1	150 aa		6.2	□□□□□ -1.42
PDLIM5-223	ENST00000627587		Q1RN00	199 aa		6.2	□□□□□ -1.42
PDLIM5-223	ENST00000627587	CARD19	Q96LW7	228 aa		6.2	□□□□□ -1.42
PDLIM5-223	ENST00000627587		Q8NDZ9	215 aa		6.19	□□□□□ -1.42
PDLIM5-223	ENST00000627587	IGKV2-28	A0A075B6P5	120 aa		6.19	□□□□□ -1.42
PDLIM5-223	ENST00000627587	TRAV13-2	A0A0B4J235	113 aa		6.19	□□□□□ -1.42
PDLIM5-223	ENST00000627587	IGKV2D-28	P01615	120 aa		6.19	□□□□□ -1.42
PDLIM5-223	ENST00000627587	RPL13A	P40429	203 aa	Known RBP	6.19	□□□□□ -1.42
PDLIM5-223	ENST00000627587		Q6ZRN7	208 aa	Predicted RBP	6.19	□□□□□ -1.42
PDLIM5-223	ENST00000627587	APOB	P04114	4563 aa	Known RBP	6.19	□□□□□ -1.42
PDLIM5-223	ENST00000627587	DNAH5	Q8TE73	4624 aa		6.18	□□□□□ -1.42
PDLIM5-223	ENST00000627587		A0A1B0GV72	72 aa		6.18	□□□□□ -1.42
PDLIM5-223	ENST00000627587	GAGE10	A6NGK3	116 aa		6.18	□□□□□ -1.42
PDLIM5-223	ENST00000627587	NDUFC2-KCTD14	E9PQ53	114 aa		6.18	□□□□□ -1.42
PDLIM5-223	ENST00000627587	RNF151	Q2KHN1	245 aa		6.18	□□□□□ -1.42
PDLIM5-223	ENST00000627587	C14orf177	Q52M58	125 aa		6.18	□□□□□ -1.42
PDLIM5-223	ENST00000627587	LYRM7	Q5U5X0	104 aa		6.18	□□□□□ -1.42
PDLIM5-223	ENST00000627587	SPCS1	Q9Y6A9	102 aa		6.18	□□□□□ -1.42
PDLIM5-223	ENST00000627587	NDUFC2	O95298	119 aa		6.17	□□□□□ -1.42
PDLIM5-223	ENST00000627587	PSMB2	P49721	201 aa		6.17	□□□□□ -1.42
PDLIM5-223	ENST00000627587	GTF2H5	Q6ZYL4	71 aa		6.17	□□□□□ -1.42
PDLIM5-223	ENST00000627587	VPS25	Q9BRG1	176 aa		6.17	□□□□□ -1.42
PDLIM5-223	ENST00000627587	KRTAP9-9	Q9BYP9	154 aa		6.17	□□□□□ -1.42
PDLIM5-223	ENST00000627587	KRTAP9-4	Q9BYQ2	154 aa		6.17	□□□□□ -1.42
PDLIM5-223	ENST00000627587	SCGB1A1	P11684	91 aa		6.17	□□□□□ -1.42
PDLIM5-223	ENST00000627587	LINC00337	Q8N6G1	96 aa		6.17	□□□□□ -1.42
PDLIM5-223	ENST00000627587		K7EP34	96 aa		6.16	□□□□□ -1.42
PDLIM5-223	ENST00000627587	SCGB1C2	P0DMR2	95 aa		6.16	□□□□□ -1.42
PDLIM5-223	ENST00000627587	UBE2V1	Q13404	147 aa		6.16	□□□□□ -1.42
PDLIM5-223	ENST00000627587	XAGE1A	Q9HD64	81 aa		6.16	□□□□□ -1.42
PDLIM5-223	ENST00000627587	TLX1NB	P0CAT3	122 aa		6.15	□□□□□ -1.42
PDLIM5-223	ENST00000627587	GAGE2E	Q4V326	116 aa		6.15	□□□□□ -1.42
PDLIM5-223	ENST00000627587		Q6ZRP5	223 aa		6.15	□□□□□ -1.42
PDLIM5-223	ENST00000627587	GAGE2D	Q9UEU5	116 aa		6.15	□□□□□ -1.42
PDLIM5-223	ENST00000627587	LRCOL1	A6NCL2	159 aa		6.15	□□□□□ -1.43
PDLIM5-223	ENST00000627587	TRIAP1	O43715	76 aa		6.15	□□□□□ -1.43
PDLIM5-223	ENST00000627587	COX6C	P09669	75 aa		6.15	□□□□□ -1.43
PDLIM5-223	ENST00000627587	PRR3	P79522	188 aa	Known RBP	6.15	□□□□□ -1.43
PDLIM5-223	ENST00000627587	RPL18A	Q02543	176 aa	Known RBP	6.15	□□□□□ -1.43
PDLIM5-223	ENST00000627587	OR13C6P	Q8NH95	151 aa		6.15	□□□□□ -1.43
PDLIM5-223	ENST00000627587	CNBP	P62633	177 aa	Known RBP	6.14	□□□□□ -1.43
PDLIM5-223	ENST00000627587	KRTAP19-1	Q8IUB9	90 aa		6.13	□□□□□ -1.43
PDLIM5-223	ENST00000627587	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	6.13	□□□□□ -1.43
PDLIM5-223	ENST00000627587	TRBV20-1	A0A075B6N2	111 aa		6.13	□□□□□ -1.43
PDLIM5-223	ENST00000627587	NCR3	O14931	201 aa		6.13	□□□□□ -1.43
PDLIM5-223	ENST00000627587	TMEM126A	Q9H061	195 aa		6.13	□□□□□ -1.43
PDLIM5-223	ENST00000627587	TRBV10-2	A0A0K0K1G8	114 aa		6.12	□□□□□ -1.43
PDLIM5-223	ENST00000627587	LOC107984640	A0A0U1RRK4	108 aa		6.12	□□□□□ -1.43
PDLIM5-223	ENST00000627587	EPM2A	B3EWF7	344 aa		6.12	□□□□□ -1.43
PDLIM5-223	ENST00000627587	S100A7L2	Q5SY68	101 aa		6.12	□□□□□ -1.43

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