RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 HIST1H1DP16402 221 aaKnown RBP-1.24□□□□□ -2.61
SCN1A-208ENST00000625916 UBA52P62987 128 aaKnown RBP-1.24□□□□□ -2.61
SCN1A-208ENST00000625916 Q8N8P6 123 aa-1.24□□□□□ -2.61
SCN1A-208ENST00000625916 LINC01600Q96MT4 127 aa-1.24□□□□□ -2.61
SCN1A-208ENST00000625916 ARHGEF5Q12774 1597 aa-1.25□□□□□ -2.61
SCN1A-208ENST00000625916 SSSCA1O60232 199 aa-1.25□□□□□ -2.61
SCN1A-208ENST00000625916 MGPP08493 103 aa-1.25□□□□□ -2.61
SCN1A-208ENST00000625916 SCGB1A1P11684 91 aa-1.25□□□□□ -2.61
SCN1A-208ENST00000625916 CKS1BP61024 79 aa-1.25□□□□□ -2.61
SCN1A-208ENST00000625916 SPRR4Q96PI1 79 aa-1.25□□□□□ -2.61
SCN1A-208ENST00000625916 CRIPTQ9P021 101 aa-1.25□□□□□ -2.61
SCN1A-208ENST00000625916 ANKRD30AQ9BXX3 1397 aa-1.25□□□□□ -2.61
SCN1A-208ENST00000625916 MYOM3Q5VTT5 1437 aa-1.25□□□□□ -2.61
SCN1A-208ENST00000625916 LOC285095A0A1B0GVY8 99 aa-1.26□□□□□ -2.61
SCN1A-208ENST00000625916 C20orf202A1L168 122 aa-1.26□□□□□ -2.61
SCN1A-208ENST00000625916 IGLC1P0CG04 106 aa-1.26□□□□□ -2.61
SCN1A-208ENST00000625916 S100A5P33763 92 aa-1.26□□□□□ -2.61
SCN1A-208ENST00000625916 MRPL54Q6P161 138 aaKnown RBP-1.26□□□□□ -2.61
SCN1A-208ENST00000625916 CLPSL2Q6UWE3 100 aa-1.26□□□□□ -2.61
SCN1A-208ENST00000625916 DPH3P1Q9H4G8 78 aa-1.26□□□□□ -2.61
SCN1A-208ENST00000625916 FHAD1B1AJZ9 1412 aa-1.26□□□□□ -2.61
SCN1A-208ENST00000625916 C1orf167Q5SNV9 1468 aa-1.26□□□□□ -2.61
SCN1A-208ENST00000625916 MAGI1Q96QZ7 1491 aaPredicted RBP-1.26□□□□□ -2.61
SCN1A-208ENST00000625916 H0YGG7 62 aa-1.27□□□□□ -2.61
SCN1A-208ENST00000625916 B2MP61769 119 aa-1.27□□□□□ -2.61
SCN1A-208ENST00000625916 COPZ1P61923 177 aa-1.27□□□□□ -2.61
SCN1A-208ENST00000625916 DEFB136Q30KP8 78 aa-1.27□□□□□ -2.61
SCN1A-208ENST00000625916 DEFB110Q30KQ9 67 aa-1.27□□□□□ -2.61
SCN1A-208ENST00000625916 TSTD1Q8NFU3 115 aa-1.27□□□□□ -2.61
SCN1A-208ENST00000625916 TPT1P8Q9HAU6 139 aa-1.27□□□□□ -2.61
SCN1A-208ENST00000625916 NXT2Q9NPJ8 142 aaKnown RBP-1.27□□□□□ -2.61
SCN1A-208ENST00000625916 FAIMQ9NVQ4 179 aa-1.27□□□□□ -2.61
SCN1A-208ENST00000625916 ADGRL2O95490 1459 aa-1.27□□□□□ -2.61
SCN1A-208ENST00000625916 CICQ96RK0 1608 aaPredicted RBP-1.28□□□□□ -2.61
SCN1A-208ENST00000625916 A0A087WVE0 104 aa-1.28□□□□□ -2.61
SCN1A-208ENST00000625916 C9orf92A6NGG3 77 aa-1.28□□□□□ -2.61
SCN1A-208ENST00000625916 SMCO1Q147U7 214 aa-1.28□□□□□ -2.61
SCN1A-208ENST00000625916 LCN9Q8WX39 176 aa-1.28□□□□□ -2.61
SCN1A-208ENST00000625916 LSM10Q969L4 123 aaKnown RBP-1.28□□□□□ -2.61
SCN1A-208ENST00000625916 TCEAL4Q96EI5 215 aa-1.28□□□□□ -2.61
SCN1A-208ENST00000625916 ANKRD50Q9ULJ7 1429 aa-1.29□□□□□ -2.62
SCN1A-208ENST00000625916 UBE2D3P61077 147 aa-1.29□□□□□ -2.62
SCN1A-208ENST00000625916 UBE2D2P62837 147 aa-1.29□□□□□ -2.62
SCN1A-208ENST00000625916 RPS25P62851 125 aaKnown RBP-1.29□□□□□ -2.62
SCN1A-208ENST00000625916 C12orf73Q69YU5 71 aa-1.29□□□□□ -2.62
SCN1A-208ENST00000625916 AKAP14Q86UN6 197 aa-1.29□□□□□ -2.62
SCN1A-208ENST00000625916 PDCD10Q9BUL8 212 aa-1.29□□□□□ -2.62
SCN1A-208ENST00000625916 TMEM191AQ9H0A3 160 aa-1.29□□□□□ -2.62
SCN1A-208ENST00000625916 MYH7P12883 1935 aa-1.3□□□□□ -2.62
SCN1A-208ENST00000625916 CHKB-CPT1BH3BT56 60 aa-1.3□□□□□ -2.62
SCN1A-208ENST00000625916 FAM223AQ8IWN6 122 aa-1.3□□□□□ -2.62
SCN1A-208ENST00000625916 LZICQ8WZA0 190 aa-1.3□□□□□ -2.62
SCN1A-208ENST00000625916 FAM167A-AS1Q96KT0 104 aa-1.3□□□□□ -2.62
SCN1A-208ENST00000625916 CCDC167Q9P0B6 97 aa-1.3□□□□□ -2.62
SCN1A-208ENST00000625916 ARL2-SNX15V9GYD0 113 aa-1.3□□□□□ -2.62
SCN1A-208ENST00000625916 ALKQ9UM73 1620 aa-1.3□□□□□ -2.62
SCN1A-208ENST00000625916 TCHHQ07283 1943 aa-1.3□□□□□ -2.62
SCN1A-208ENST00000625916 CDC42BPAQ5VT25 1732 aa-1.31□□□□□ -2.62
SCN1A-208ENST00000625916 LOC100130705A0A1B0GUX0 176 aa-1.31□□□□□ -2.62
SCN1A-208ENST00000625916 I3L3M4 83 aa-1.31□□□□□ -2.62
SCN1A-208ENST00000625916 WHAMMP3Q1A5X7 153 aa-1.31□□□□□ -2.62
SCN1A-208ENST00000625916 COPS9Q8WXC6 57 aa-1.31□□□□□ -2.62
SCN1A-208ENST00000625916 SPANXDQ9BXN6 97 aa-1.31□□□□□ -2.62
SCN1A-208ENST00000625916 PRO1933Q9H354 126 aa-1.31□□□□□ -2.62
SCN1A-208ENST00000625916 ARHGAP35Q9NRY4 1499 aa-1.31□□□□□ -2.62
SCN1A-208ENST00000625916 MARF1Q9Y4F3 1742 aaKnown RBP-1.32□□□□□ -2.62
SCN1A-208ENST00000625916 MYOM1P52179 1685 aa-1.32□□□□□ -2.62
SCN1A-208ENST00000625916 TNRC6CQ9HCJ0 1690 aaKnown RBP-1.32□□□□□ -2.62
SCN1A-208ENST00000625916 SEC11AP67812 179 aa-1.32□□□□□ -2.62
SCN1A-208ENST00000625916 MYOZ3Q8TDC0 251 aa-1.32□□□□□ -2.62
SCN1A-208ENST00000625916 COPZ2Q9P299 210 aa-1.32□□□□□ -2.62
SCN1A-208ENST00000625916 LINC00474Q9P2X8 69 aa-1.32□□□□□ -2.62
SCN1A-208ENST00000625916 SERP1Q9Y6X1 66 aa-1.32□□□□□ -2.62
SCN1A-208ENST00000625916 A0A0G2JMZ2 1700 aa-1.32□□□□□ -2.62
SCN1A-208ENST00000625916 PYDC1Q8WXC3 89 aa-1.33□□□□□ -2.62
SCN1A-208ENST00000625916 RERGLQ9H628 205 aa-1.33□□□□□ -2.62
SCN1A-208ENST00000625916 CDC42SE2Q9NRR3 84 aa-1.33□□□□□ -2.62
SCN1A-208ENST00000625916 PLXNC1O60486 1568 aa-1.34□□□□□ -2.62
SCN1A-208ENST00000625916 CFTRP13569 1480 aa-1.34□□□□□ -2.62
SCN1A-208ENST00000625916 HEPN1Q6WQI6 88 aa-1.34□□□□□ -2.62
SCN1A-208ENST00000625916 PPP3R2Q96LZ3 170 aa-1.34□□□□□ -2.62
SCN1A-208ENST00000625916 UQCR10Q9UDW1 63 aa-1.34□□□□□ -2.62
SCN1A-208ENST00000625916 CPSF1Q10570 1443 aaKnown RBP-1.34□□□□□ -2.62
SCN1A-208ENST00000625916 XRN1Q8IZH2 1706 aaKnown RBP-1.35□□□□□ -2.62
SCN1A-208ENST00000625916 CCDC141Q6ZP82 1450 aa-1.35□□□□□ -2.63
SCN1A-208ENST00000625916 A0A1B0GU69 56 aa-1.35□□□□□ -2.63
SCN1A-208ENST00000625916 BTG2P78543 158 aa-1.35□□□□□ -2.63
SCN1A-208ENST00000625916 PRLHP81277 87 aa-1.35□□□□□ -2.63
SCN1A-208ENST00000625916 WFDC13Q8IUB5 93 aa-1.35□□□□□ -2.63
SCN1A-208ENST00000625916 PDCD11Q14690 1871 aaKnown RBP-1.35□□□□□ -2.63
SCN1A-208ENST00000625916 UBR3Q6ZT12 1888 aa-1.35□□□□□ -2.63
SCN1A-208ENST00000625916 PLEKHH2Q8IVE3 1493 aa-1.36□□□□□ -2.63
SCN1A-208ENST00000625916 TRAV30A0A087WSZ9 112 aa-1.36□□□□□ -2.63
SCN1A-208ENST00000625916 A0A1B0GWA3 101 aa-1.36□□□□□ -2.63
SCN1A-208ENST00000625916 COMMD6Q7Z4G1 85 aa-1.36□□□□□ -2.63
SCN1A-208ENST00000625916 ANP32BQ92688 251 aaKnown RBP-1.36□□□□□ -2.63
SCN1A-208ENST00000625916 MRPL34Q9BQ48 92 aaKnown RBP-1.36□□□□□ -2.63
SCN1A-208ENST00000625916 NLRP1Q9C000 1473 aa-1.37□□□□□ -2.63
SCN1A-208ENST00000625916 NCOA3Q9Y6Q9 1424 aa-1.37□□□□□ -2.63
SCN1A-208ENST00000625916 MIF4GDA9UHW6 222 aaKnown RBP-1.37□□□□□ -2.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms