RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 MRPL55Q7Z7F7 128 aaKnown RBP9.76□□□□□ -0.85
CPSF1-212ENST00000616140 A6NED7 52 aa9.75□□□□□ -0.85
CPSF1-212ENST00000616140 TRBV7-7A0A0K0K1E9 115 aa9.75□□□□□ -0.85
CPSF1-212ENST00000616140 HTTP42858 3142 aa9.74□□□□□ -0.85
CPSF1-212ENST00000616140 FAM218AQ96MZ4 157 aa9.73□□□□□ -0.85
CPSF1-212ENST00000616140 SERP1Q9Y6X1 66 aa9.73□□□□□ -0.85
CPSF1-212ENST00000616140 FHL3Q13643 280 aa9.73□□□□□ -0.85
CPSF1-212ENST00000616140 DEFB116Q30KQ4 102 aa9.73□□□□□ -0.85
CPSF1-212ENST00000616140 CHD9Q3L8U1 2897 aa9.72□□□□□ -0.85
CPSF1-212ENST00000616140 PRYO14603 147 aa9.72□□□□□ -0.85
CPSF1-212ENST00000616140 COL27A1Q8IZC6 1860 aaPredicted RBP9.71□□□□□ -0.85
CPSF1-212ENST00000616140 TMEM254Q8TBM7 123 aa9.71□□□□□ -0.85
CPSF1-212ENST00000616140 Q9BRP9 147 aa9.71□□□□□ -0.86
CPSF1-212ENST00000616140 UNC80Q8N2C7 3258 aa9.71□□□□□ -0.86
CPSF1-212ENST00000616140 ITPR3Q14573 2671 aa9.71□□□□□ -0.86
CPSF1-212ENST00000616140 COL4A2P08572 1712 aa9.7□□□□□ -0.86
CPSF1-212ENST00000616140 MAP1AP78559 2803 aaPredicted RBP9.7□□□□□ -0.86
CPSF1-212ENST00000616140 PRLHP81277 87 aa9.7□□□□□ -0.86
CPSF1-212ENST00000616140 CFAP46Q8IYW2 2715 aa9.7□□□□□ -0.86
CPSF1-212ENST00000616140 PCSK5Q92824 1860 aa9.69□□□□□ -0.86
CPSF1-212ENST00000616140 ESRGQ1W209 222 aa9.69□□□□□ -0.86
CPSF1-212ENST00000616140 F8WDY8 70 aa9.68□□□□□ -0.86
CPSF1-212ENST00000616140 KLK9Q2XQG4 91 aa9.67□□□□□ -0.86
CPSF1-212ENST00000616140 NUPR2A6NF83 97 aa9.66□□□□□ -0.86
CPSF1-212ENST00000616140 SBSPONQ8IVN8 264 aa9.66□□□□□ -0.86
CPSF1-212ENST00000616140 CIRBP-AS1Q8TBR5 109 aa9.66□□□□□ -0.86
CPSF1-212ENST00000616140 C22orf24Q9Y442 160 aa9.66□□□□□ -0.86
CPSF1-212ENST00000616140 X6R8D5 127 aa9.66□□□□□ -0.86
CPSF1-212ENST00000616140 IGHV6-1A0A0B4J1U7 121 aa9.66□□□□□ -0.86
CPSF1-212ENST00000616140 C6orf48Q9UBA6 75 aa9.66□□□□□ -0.86
CPSF1-212ENST00000616140 SPATA3Q8NHX4 192 aa9.66□□□□□ -0.86
CPSF1-212ENST00000616140 LINC01556Q5JQF7 62 aa9.65□□□□□ -0.86
CPSF1-212ENST00000616140 HELZ2Q9BYK8 2649 aaKnown RBP9.65□□□□□ -0.86
CPSF1-212ENST00000616140 MGAQ8IWI9 3026 aa9.65□□□□□ -0.86
CPSF1-212ENST00000616140 PRR15LQ9BU68 103 aa9.65□□□□□ -0.87
CPSF1-212ENST00000616140 KIAA0087Q14695 138 aa9.64□□□□□ -0.87
CPSF1-212ENST00000616140 PCOTHQ58A44 107 aa9.64□□□□□ -0.87
CPSF1-212ENST00000616140 CXCL6P80162 114 aa9.63□□□□□ -0.87
CPSF1-212ENST00000616140 CHD6Q8TD26 2715 aa9.63□□□□□ -0.87
CPSF1-212ENST00000616140 WDFY4Q6ZS81 3184 aa9.63□□□□□ -0.87
CPSF1-212ENST00000616140 LITAFQ99732 161 aa9.62□□□□□ -0.87
CPSF1-212ENST00000616140 SMCR5Q8TEV8 140 aa9.61□□□□□ -0.87
CPSF1-212ENST00000616140 K7ERS5 55 aa9.61□□□□□ -0.87
CPSF1-212ENST00000616140 LINC00167Q96N53 147 aa9.6□□□□□ -0.87
CPSF1-212ENST00000616140 HCG22E2RYF7 251 aa9.6□□□□□ -0.87
CPSF1-212ENST00000616140 C1orf195Q5TG92 126 aa9.6□□□□□ -0.87
CPSF1-212ENST00000616140 TRBV7-6A0A0J9YX20 115 aa9.6□□□□□ -0.87
CPSF1-212ENST00000616140 H0Y9P7 68 aa9.6□□□□□ -0.87
CPSF1-212ENST00000616140 PSPHP1O15172 72 aa9.6□□□□□ -0.87
CPSF1-212ENST00000616140 IGLV5-52A0A0A0MRZ9 124 aa9.59□□□□□ -0.87
CPSF1-212ENST00000616140 PRUNE2Q8WUY3 3088 aa9.59□□□□□ -0.87
CPSF1-212ENST00000616140 FSHBP01225 129 aa9.58□□□□□ -0.88
CPSF1-212ENST00000616140 CRYGAP11844 174 aa9.58□□□□□ -0.88
CPSF1-212ENST00000616140 TRIOO75962 3097 aa9.58□□□□□ -0.88
CPSF1-212ENST00000616140 EIF4EBP3O60516 100 aaPredicted RBP9.58□□□□□ -0.88
CPSF1-212ENST00000616140 SMIM29Q86T20 159 aa9.56□□□□□ -0.88
CPSF1-212ENST00000616140 PMAIP1Q13794 54 aa9.55□□□□□ -0.88
CPSF1-212ENST00000616140 ELOF1P60002 83 aaKnown RBP9.54□□□□□ -0.88
CPSF1-212ENST00000616140 Q6ZQT0 140 aa9.54□□□□□ -0.88
CPSF1-212ENST00000616140 Q8NAQ8 132 aa9.54□□□□□ -0.88
CPSF1-212ENST00000616140 RETNLBQ9BQ08 111 aa9.53□□□□□ -0.88
CPSF1-212ENST00000616140 TEP1Q99973 2627 aaKnown RBP9.52□□□□□ -0.89
CPSF1-212ENST00000616140 STAB1Q9NY15 2570 aa9.52□□□□□ -0.89
CPSF1-212ENST00000616140 H3BNG1 76 aa9.52□□□□□ -0.89
CPSF1-212ENST00000616140 C1orf134Q5TEV5 83 aa9.51□□□□□ -0.89
CPSF1-212ENST00000616140 TRANK1O15050 2925 aa9.51□□□□□ -0.89
CPSF1-212ENST00000616140 C1orf64Q8NEQ6 169 aa9.5□□□□□ -0.89
CPSF1-212ENST00000616140 hDV103S1A0JD37 113 aa9.5□□□□□ -0.89
CPSF1-212ENST00000616140 Q8NBF4 154 aa9.49□□□□□ -0.89
CPSF1-212ENST00000616140 ZNF292O60281 2723 aa9.49□□□□□ -0.89
CPSF1-212ENST00000616140 XIRP2A4UGR9 3374 aa9.49□□□□□ -0.89
CPSF1-212ENST00000616140 CDH23Q9H251 3354 aa9.49□□□□□ -0.89
CPSF1-212ENST00000616140 Q6ZRX8 168 aa9.48□□□□□ -0.89
CPSF1-212ENST00000616140 LOC110117498A0A087WWA1 95 aa9.48□□□□□ -0.89
CPSF1-212ENST00000616140 BCE1O60756 84 aa9.47□□□□□ -0.89
CPSF1-212ENST00000616140 VPS13AQ96RL7 3174 aa9.46□□□□□ -0.89
CPSF1-212ENST00000616140 ST20-AS1Q8NBB2 130 aa9.46□□□□□ -0.89
CPSF1-212ENST00000616140 TEX15Q9BXT5 2789 aa9.46□□□□□ -0.9
CPSF1-212ENST00000616140 SPINK1P00995 79 aa9.46□□□□□ -0.9
CPSF1-212ENST00000616140 MDFIQ99750 246 aa9.46□□□□□ -0.9
CPSF1-212ENST00000616140 NOTCH1P46531 2555 aa9.46□□□□□ -0.9
CPSF1-212ENST00000616140 KRTAP24-1Q3LI83 254 aa9.46□□□□□ -0.9
CPSF1-212ENST00000616140 LINC00476Q8WZB0 136 aa9.46□□□□□ -0.9
CPSF1-212ENST00000616140 TM2D3Q9BRN9 247 aa9.46□□□□□ -0.9
CPSF1-212ENST00000616140 CSNK1G2-AS1Q8NCQ2 148 aa9.45□□□□□ -0.9
CPSF1-212ENST00000616140 Q6ZRP5 223 aa9.45□□□□□ -0.9
CPSF1-212ENST00000616140 VPREB1P12018 145 aa9.44□□□□□ -0.9
CPSF1-212ENST00000616140 A0A1B0GW54 56 aa9.43□□□□□ -0.9
CPSF1-212ENST00000616140 MOBPQ13875 183 aa9.43□□□□□ -0.9
CPSF1-212ENST00000616140 GVQW2A0A096LPI5 108 aaPredicted RBP9.43□□□□□ -0.9
CPSF1-212ENST00000616140 LINC00588Q9Y4M8 146 aa9.43□□□□□ -0.9
CPSF1-212ENST00000616140 IGLV6-57P01721 117 aa9.43□□□□□ -0.9
CPSF1-212ENST00000616140 PHF5AQ7RTV0 110 aaKnown RBP9.43□□□□□ -0.9
CPSF1-212ENST00000616140 DSPP15924 2871 aaKnown RBP9.42□□□□□ -0.9
CPSF1-212ENST00000616140 RPS28P62857 69 aaKnown RBP9.42□□□□□ -0.9
CPSF1-212ENST00000616140 NHLRC4P0CG21 123 aaPredicted RBP9.41□□□□□ -0.9
CPSF1-212ENST00000616140 GIG44P09565 113 aaPredicted RBP9.41□□□□□ -0.9
CPSF1-212ENST00000616140 NBEAL1Q6ZS30 2694 aa9.4□□□□□ -0.9
CPSF1-212ENST00000616140 A0A096LNT2 108 aa9.39□□□□□ -0.91
CPSF1-212ENST00000616140 IGKV2D-30A0A075B6S6 120 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms