RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 FASNP49327 2511 aaKnown RBP7.12□□□□□ -1.27
VPS39-214ENST00000614932 K7EQG2 157 aa7.12□□□□□ -1.27
VPS39-214ENST00000614932 FSHBP01225 129 aa7.12□□□□□ -1.27
VPS39-214ENST00000614932 Q8N814 137 aa7.12□□□□□ -1.27
VPS39-214ENST00000614932 LOC110117498A0A087WWA1 95 aa7.12□□□□□ -1.27
VPS39-214ENST00000614932 SYCNQ0VAF6 134 aa7.12□□□□□ -1.27
VPS39-214ENST00000614932 IGHV3-73A0A0B4J1V6 119 aa7.11□□□□□ -1.27
VPS39-214ENST00000614932 CCL18P55774 89 aa7.11□□□□□ -1.27
VPS39-214ENST00000614932 DEFB131AP59861 70 aa7.11□□□□□ -1.27
VPS39-214ENST00000614932 JMJD1CQ15652 2540 aa7.11□□□□□ -1.27
VPS39-214ENST00000614932 FAM19A3Q7Z5A8 133 aa7.11□□□□□ -1.27
VPS39-214ENST00000614932 H3BS24 57 aa7.1□□□□□ -1.27
VPS39-214ENST00000614932 RNASE1P07998 156 aaKnown RBP7.1□□□□□ -1.27
VPS39-214ENST00000614932 PDZD2O15018 2839 aa7.1□□□□□ -1.27
VPS39-214ENST00000614932 A8MU10 97 aa7.09□□□□□ -1.27
VPS39-214ENST00000614932 LY6G6DO95868 133 aa7.09□□□□□ -1.27
VPS39-214ENST00000614932 LINC00158P58513 81 aa7.09□□□□□ -1.27
VPS39-214ENST00000614932 C1orf64Q8NEQ6 169 aa7.09□□□□□ -1.27
VPS39-214ENST00000614932 ESM1Q9NQ30 184 aa7.09□□□□□ -1.27
VPS39-214ENST00000614932 M0R2N4 97 aa7.09□□□□□ -1.28
VPS39-214ENST00000614932 PROK1P58294 105 aa7.09□□□□□ -1.28
VPS39-214ENST00000614932 SMR3AQ99954 134 aa7.09□□□□□ -1.28
VPS39-214ENST00000614932 DNAJC9-AS1A6NH13 148 aa7.08□□□□□ -1.28
VPS39-214ENST00000614932 ZNF73O43830 326 aaPredicted RBP7.08□□□□□ -1.28
VPS39-214ENST00000614932 HIGD2AQ9BW72 106 aa7.08□□□□□ -1.28
VPS39-214ENST00000614932 TRBV6-4A0A1B0GX49 114 aa7.08□□□□□ -1.28
VPS39-214ENST00000614932 C8orf87E5RJ46 101 aa7.08□□□□□ -1.28
VPS39-214ENST00000614932 OCR1Q9BZK8 76 aa7.08□□□□□ -1.28
VPS39-214ENST00000614932 A8MUN3 132 aa7.07□□□□□ -1.28
VPS39-214ENST00000614932 NTM-AS1Q6ZSK4 140 aa7.07□□□□□ -1.28
VPS39-214ENST00000614932 PHF5AQ7RTV0 110 aaKnown RBP7.07□□□□□ -1.28
VPS39-214ENST00000614932 UNC79Q9P2D8 2635 aa7.07□□□□□ -1.28
VPS39-214ENST00000614932 GCN1Q92616 2671 aaKnown RBP7.07□□□□□ -1.28
VPS39-214ENST00000614932 UBE2L6O14933 153 aa7.07□□□□□ -1.28
VPS39-214ENST00000614932 SCXQ7RTU7 201 aa7.07□□□□□ -1.28
VPS39-214ENST00000614932 LINC00269Q8N2A0 174 aa7.06□□□□□ -1.28
VPS39-214ENST00000614932 UBE2AP49459 152 aa7.06□□□□□ -1.28
VPS39-214ENST00000614932 PDE6GP18545 87 aa7.05□□□□□ -1.28
VPS39-214ENST00000614932 CD164L2Q6UWJ8 174 aa7.05□□□□□ -1.28
VPS39-214ENST00000614932 COX7B2Q8TF08 81 aa7.05□□□□□ -1.28
VPS39-214ENST00000614932 C16orf90A8MZG2 172 aa7.04□□□□□ -1.28
VPS39-214ENST00000614932 PLA2G2AP14555 144 aa7.04□□□□□ -1.28
VPS39-214ENST00000614932 Q5VV11 94 aa7.04□□□□□ -1.28
VPS39-214ENST00000614932 ATP11AUNQ6ZP68 121 aa7.04□□□□□ -1.28
VPS39-214ENST00000614932 SPTSSBQ8NFR3 76 aa7.04□□□□□ -1.28
VPS39-214ENST00000614932 C2CD3Q4AC94 2353 aa7.03□□□□□ -1.28
VPS39-214ENST00000614932 SETXQ7Z333 2677 aaKnown RBP7.03□□□□□ -1.28
VPS39-214ENST00000614932 C9orf66Q5T8R8 295 aa7.03□□□□□ -1.28
VPS39-214ENST00000614932 C4orf3Q8WVX3 66 aa7.03□□□□□ -1.28
VPS39-214ENST00000614932 PSCAO43653 123 aa7.03□□□□□ -1.28
VPS39-214ENST00000614932 ANK3Q12955 4377 aaKnown RBP7.03□□□□□ -1.28
VPS39-214ENST00000614932 K7EQD1 137 aa7.02□□□□□ -1.29
VPS39-214ENST00000614932 MAP6D1Q9H9H5 199 aa7.02□□□□□ -1.29
VPS39-214ENST00000614932 HIVEP2P31629 2446 aa7.02□□□□□ -1.29
VPS39-214ENST00000614932 J3QKU1 62 aa7.02□□□□□ -1.29
VPS39-214ENST00000614932 DEFB114Q30KQ6 69 aa7.02□□□□□ -1.29
VPS39-214ENST00000614932 Q6ZSN1 163 aa7.02□□□□□ -1.29
VPS39-214ENST00000614932 WFDC10AQ9H1F0 79 aa7.02□□□□□ -1.29
VPS39-214ENST00000614932 TOMM7Q9P0U1 55 aa7.02□□□□□ -1.29
VPS39-214ENST00000614932 FN1P02751 2386 aaKnown RBP7.02□□□□□ -1.29
VPS39-214ENST00000614932 A6NN06 94 aa7.01□□□□□ -1.29
VPS39-214ENST00000614932 CCL24O00175 119 aa7□□□□□ -1.29
VPS39-214ENST00000614932 NANOS2P60321 138 aaKnown RBP7□□□□□ -1.29
VPS39-214ENST00000614932 KRTAP1-1Q07627 177 aa7□□□□□ -1.29
VPS39-214ENST00000614932 TRBV6-8A0A0A6YYG3 113 aa7□□□□□ -1.29
VPS39-214ENST00000614932 CHKB-CPT1BH3BT56 60 aa7□□□□□ -1.29
VPS39-214ENST00000614932 C7orf65Q6ZTY9 151 aa7□□□□□ -1.29
VPS39-214ENST00000614932 HCG22E2RYF7 251 aa6.99□□□□□ -1.29
VPS39-214ENST00000614932 LINC01006Q8NI28 216 aa6.99□□□□□ -1.29
VPS39-214ENST00000614932 DIRC1Q969H9 104 aa6.99□□□□□ -1.29
VPS39-214ENST00000614932 KMT2BQ9UMN6 2715 aaPredicted RBP6.99□□□□□ -1.29
VPS39-214ENST00000614932 ODF3L2Q3SX64 289 aa6.99□□□□□ -1.29
VPS39-214ENST00000614932 LCA10Q71F78 164 aa6.99□□□□□ -1.29
VPS39-214ENST00000614932 CYP4F30PQ9H0H9 118 aa6.99□□□□□ -1.29
VPS39-214ENST00000614932 OTOGQ6ZRI0 2925 aa6.98□□□□□ -1.29
VPS39-214ENST00000614932 IGHV3-53P01767 116 aa6.98□□□□□ -1.29
VPS39-214ENST00000614932 IGKV4-1P06312 121 aa6.98□□□□□ -1.29
VPS39-214ENST00000614932 MUC7Q8TAX7 377 aa6.98□□□□□ -1.29
VPS39-214ENST00000614932 CDC42SE2Q9NRR3 84 aa6.98□□□□□ -1.29
VPS39-214ENST00000614932 SPATA3Q8NHX4 192 aa6.98□□□□□ -1.29
VPS39-214ENST00000614932 LINC00575Q6W349 94 aa6.97□□□□□ -1.29
VPS39-214ENST00000614932 NBEAL2Q6ZNJ1 2754 aa6.97□□□□□ -1.29
VPS39-214ENST00000614932 Q8N9L7 120 aa6.96□□□□□ -1.29
VPS39-214ENST00000614932 VWFP04275 2813 aa6.96□□□□□ -1.3
VPS39-214ENST00000614932 LCE6AA0A183 80 aa6.95□□□□□ -1.3
VPS39-214ENST00000614932 H3BQ85 93 aa6.95□□□□□ -1.3
VPS39-214ENST00000614932 C6orf99Q4VX62 202 aa6.95□□□□□ -1.3
VPS39-214ENST00000614932 TRGV1A0A0A0MS02 117 aa6.94□□□□□ -1.3
VPS39-214ENST00000614932 INSP01308 110 aa6.94□□□□□ -1.3
VPS39-214ENST00000614932 LIMD2Q9BT23 127 aa6.94□□□□□ -1.3
VPS39-214ENST00000614932 ZCCHC13Q8WW36 166 aaKnown RBP6.93□□□□□ -1.3
VPS39-214ENST00000614932 FAM30AQ9NZY2 134 aa6.93□□□□□ -1.3
VPS39-214ENST00000614932 PRR3P79522 188 aaKnown RBP6.92□□□□□ -1.3
VPS39-214ENST00000614932 TENM1Q9UKZ4 2725 aa6.91□□□□□ -1.3
VPS39-214ENST00000614932 KRTAP10-3P60369 221 aa6.91□□□□□ -1.3
VPS39-214ENST00000614932 NOP10Q9NPE3 64 aaKnown RBP6.91□□□□□ -1.3
VPS39-214ENST00000614932 IGLV4-60A0A075B6I1 120 aa6.91□□□□□ -1.3
VPS39-214ENST00000614932 PRR4Q16378 134 aa6.91□□□□□ -1.3
VPS39-214ENST00000614932 PRR26Q8N8Z3 221 aa6.91□□□□□ -1.3
VPS39-214ENST00000614932 Q8N9P0 234 aaPredicted RBP6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms