RNA–Protein interactions for RNA: ENST00000593829.5

LSM4-203, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM4, Length 1,908 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-203ENST00000593829 ACYP1P07311 99 aa13.05□□□□□ -0.32
LSM4-203ENST00000593829 LINC00269Q8N2A0 174 aa13.05□□□□□ -0.32
LSM4-203ENST00000593829 CLEC2BQ92478 149 aa13.05□□□□□ -0.32
LSM4-203ENST00000593829 TMEM101Q96IK0 257 aa13.05□□□□□ -0.32
LSM4-203ENST00000593829 CDKN2A-AS1Q9UH64 79 aa13.05□□□□□ -0.32
LSM4-203ENST00000593829 IGKV2D-24A0A075B6R9 120 aa13.04□□□□□ -0.32
LSM4-203ENST00000593829 A0A087WTM6 91 aa13.04□□□□□ -0.32
LSM4-203ENST00000593829 IGLV4-60A0A075B6I1 120 aa13.03□□□□□ -0.32
LSM4-203ENST00000593829 HERVK_113P63121 156 aa13.03□□□□□ -0.32
LSM4-203ENST00000593829 PRR34Q9NV39 138 aa13.03□□□□□ -0.32
LSM4-203ENST00000593829 B5MCH6 92 aa13.03□□□□□ -0.32
LSM4-203ENST00000593829 LINC00308Q8TCZ7 52 aa13.03□□□□□ -0.32
LSM4-203ENST00000593829 C1orf43Q9BWL3 253 aa13.02□□□□□ -0.32
LSM4-203ENST00000593829 COX7A2LO14548 114 aa13.01□□□□□ -0.33
LSM4-203ENST00000593829 REG3AQ06141 175 aa13.01□□□□□ -0.33
LSM4-203ENST00000593829 CLPSL2Q6UWE3 100 aa13.01□□□□□ -0.33
LSM4-203ENST00000593829 SS18L2Q9UHA2 77 aa13.01□□□□□ -0.33
LSM4-203ENST00000593829 CSDC2Q9Y534 153 aaKnown RBP13.01□□□□□ -0.33
LSM4-203ENST00000593829 IMUPQ9GZP8 106 aa13.01□□□□□ -0.33
LSM4-203ENST00000593829 LRCOL1A6NCL2 159 aa13□□□□□ -0.33
LSM4-203ENST00000593829 NPC2P61916 151 aa13□□□□□ -0.33
LSM4-203ENST00000593829 CCDC179H3BU77 68 aa12.99□□□□□ -0.33
LSM4-203ENST00000593829 KRTAP10-2P60368 255 aa12.98□□□□□ -0.33
LSM4-203ENST00000593829 TRACP01848 142 aa12.98□□□□□ -0.33
LSM4-203ENST00000593829 LINC00242Q5T6M2 205 aa12.98□□□□□ -0.33
LSM4-203ENST00000593829 DGAT2L7PQ6IED9 249 aa12.98□□□□□ -0.33
LSM4-203ENST00000593829 DNAH11Q96DT5 4516 aa12.97□□□□□ -0.33
LSM4-203ENST00000593829 HERV-K104P63124 156 aa12.96□□□□□ -0.33
LSM4-203ENST00000593829 COX6A2Q02221 97 aa12.96□□□□□ -0.33
LSM4-203ENST00000593829 PKHD1P08F94 4074 aa12.96□□□□□ -0.34
LSM4-203ENST00000593829 C16orf90A8MZG2 172 aa12.96□□□□□ -0.34
LSM4-203ENST00000593829 SMIM1B2RUZ4 78 aa12.96□□□□□ -0.34
LSM4-203ENST00000593829 ZNF625Q96I27 306 aaPredicted RBP12.96□□□□□ -0.34
LSM4-203ENST00000593829 DAND5Q8N907 189 aa12.95□□□□□ -0.34
LSM4-203ENST00000593829 BIRC6Q9NR09 4857 aa12.94□□□□□ -0.34
LSM4-203ENST00000593829 IGLV10-54A0A075B6I4 117 aa12.94□□□□□ -0.34
LSM4-203ENST00000593829 SDIM1Q6ZPB5 146 aa12.94□□□□□ -0.34
LSM4-203ENST00000593829 Q8N814 137 aa12.94□□□□□ -0.34
LSM4-203ENST00000593829 IGKV3OR2-268A0A0C4DH90 116 aa12.93□□□□□ -0.34
LSM4-203ENST00000593829 LECT2O14960 151 aa12.93□□□□□ -0.34
LSM4-203ENST00000593829 SOSTDC1Q6X4U4 206 aa12.93□□□□□ -0.34
LSM4-203ENST00000593829 CDC42SE2Q9NRR3 84 aa12.92□□□□□ -0.34
LSM4-203ENST00000593829 KRTAP26-1Q6PEX3 210 aa12.92□□□□□ -0.34
LSM4-203ENST00000593829 LINC00643Q86TS7 51 aa12.91□□□□□ -0.34
LSM4-203ENST00000593829 FUSP35637 526 aaKnown RBP eCLIP12.9□□□□□ -0.34
LSM4-203ENST00000593829 C14orf177Q52M58 125 aa12.87□□□□□ -0.35
LSM4-203ENST00000593829 MEIG1Q5JSS6 88 aa12.87□□□□□ -0.35
LSM4-203ENST00000593829 CHCHD10Q8WYQ3 142 aaPredicted RBP12.87□□□□□ -0.35
LSM4-203ENST00000593829 TMEM126AQ9H061 195 aa12.87□□□□□ -0.35
LSM4-203ENST00000593829 IGLV5-52A0A0A0MRZ9 124 aa12.86□□□□□ -0.35
LSM4-203ENST00000593829 LINC00959A0A1B0GUT2 108 aa12.86□□□□□ -0.35
LSM4-203ENST00000593829 USP17L23D6RBM5 183 aa12.86□□□□□ -0.35
LSM4-203ENST00000593829 RPL28P46779 137 aaKnown RBP12.86□□□□□ -0.35
LSM4-203ENST00000593829 DYNC1H1Q14204 4646 aaKnown RBP12.86□□□□□ -0.35
LSM4-203ENST00000593829 TRAV13-2A0A0B4J235 113 aa12.86□□□□□ -0.35
LSM4-203ENST00000593829 BAALC-AS2P0C853 105 aa12.86□□□□□ -0.35
LSM4-203ENST00000593829 INAFM2P0DMQ5 153 aa12.86□□□□□ -0.35
LSM4-203ENST00000593829 CXCL5P42830 114 aa12.86□□□□□ -0.35
LSM4-203ENST00000593829 SS18Q15532 418 aa12.85□□□□□ -0.35
LSM4-203ENST00000593829 C22orf24Q9Y442 160 aa12.85□□□□□ -0.35
LSM4-203ENST00000593829 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.84□□□□□ -0.35
LSM4-203ENST00000593829 SMCR5Q8TEV8 140 aa12.83□□□□□ -0.36
LSM4-203ENST00000593829 TRAV13-1A0A0B4J241 112 aa12.82□□□□□ -0.36
LSM4-203ENST00000593829 XCL1P47992 114 aa12.82□□□□□ -0.36
LSM4-203ENST00000593829 C5orf38Q86SI9 138 aa12.81□□□□□ -0.36
LSM4-203ENST00000593829 A0A0U1RRA0 63 aa12.8□□□□□ -0.36
LSM4-203ENST00000593829 FAM236AA0A1B0GUQ0 79 aa12.8□□□□□ -0.36
LSM4-203ENST00000593829 FAM236BA0A1B0GV22 79 aa12.8□□□□□ -0.36
LSM4-203ENST00000593829 FAM218AQ96MZ4 157 aa12.8□□□□□ -0.36
LSM4-203ENST00000593829 DNAH5Q8TE73 4624 aa12.79□□□□□ -0.36
LSM4-203ENST00000593829 CFAP161Q6P656 301 aa12.79□□□□□ -0.36
LSM4-203ENST00000593829 CD164L2Q6UWJ8 174 aa12.79□□□□□ -0.36
LSM4-203ENST00000593829 MALP21145 153 aa12.78□□□□□ -0.36
LSM4-203ENST00000593829 KRTAP10-1P60331 282 aa12.78□□□□□ -0.36
LSM4-203ENST00000593829 LRP1BQ9NZR2 4599 aa12.77□□□□□ -0.36
LSM4-203ENST00000593829 COX7B2Q8TF08 81 aa12.77□□□□□ -0.37
LSM4-203ENST00000593829 H0YGX0 51 aa12.76□□□□□ -0.37
LSM4-203ENST00000593829 CDK2AP2O75956 126 aa12.76□□□□□ -0.37
LSM4-203ENST00000593829 C3orf22Q8N5N4 141 aa12.76□□□□□ -0.37
LSM4-203ENST00000593829 UQCRQO14949 82 aa12.75□□□□□ -0.37
LSM4-203ENST00000593829 C15orf56Q8N910 161 aa12.75□□□□□ -0.37
LSM4-203ENST00000593829 IGKV2-28A0A075B6P5 120 aa12.74□□□□□ -0.37
LSM4-203ENST00000593829 IGKV2D-28P01615 120 aa12.74□□□□□ -0.37
LSM4-203ENST00000593829 LINC00337Q8N6G1 96 aa12.74□□□□□ -0.37
LSM4-203ENST00000593829 OBSCN-AS1Q96MR7 158 aa12.74□□□□□ -0.37
LSM4-203ENST00000593829 SMIM20Q8N5G0 67 aa12.74□□□□□ -0.37
LSM4-203ENST00000593829 MIR7-3HGQ8N6C7 128 aa12.74□□□□□ -0.37
LSM4-203ENST00000593829 SND1-IT1Q9HBX3 110 aa12.74□□□□□ -0.37
LSM4-203ENST00000593829 HIST1H4AP62805 103 aaKnown RBP12.73□□□□□ -0.37
LSM4-203ENST00000593829 KIAA1109Q2LD37 5005 aa12.73□□□□□ -0.37
LSM4-203ENST00000593829 LINC00526Q96FQ7 95 aa12.72□□□□□ -0.37
LSM4-203ENST00000593829 GVQW2A0A096LPI5 108 aaPredicted RBP12.71□□□□□ -0.37
LSM4-203ENST00000593829 CNBPP62633 177 aaKnown RBP12.71□□□□□ -0.37
LSM4-203ENST00000593829 HIGD2BQ4VC39 106 aa12.71□□□□□ -0.37
LSM4-203ENST00000593829 SMIM11BQ8TCY0 68 aa12.7□□□□□ -0.38
LSM4-203ENST00000593829 IGHV3OR16-9A0A0B4J2B5 98 aa12.69□□□□□ -0.38
LSM4-203ENST00000593829 DNAL4O96015 105 aa12.69□□□□□ -0.38
LSM4-203ENST00000593829 GAGE2AQ6NT46 116 aa12.69□□□□□ -0.38
LSM4-203ENST00000593829 C9orf153Q5TBE3 101 aa12.68□□□□□ -0.38
LSM4-203ENST00000593829 C9orf163Q8N9P6 203 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms