RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 CXCL5P42830 114 aa4.54□□□□□ -1.68
NUP88-205ENST00000572809 UBE2BP63146 152 aa4.54□□□□□ -1.68
NUP88-205ENST00000572809 KRTAP11-1Q8IUC1 163 aa4.54□□□□□ -1.68
NUP88-205ENST00000572809 SVBPQ8N300 66 aa4.54□□□□□ -1.68
NUP88-205ENST00000572809 C18orf32Q8TCD1 76 aa4.54□□□□□ -1.68
NUP88-205ENST00000572809 COX7B2Q8TF08 81 aa4.54□□□□□ -1.68
NUP88-205ENST00000572809 SMIM1B2RUZ4 78 aa4.53□□□□□ -1.68
NUP88-205ENST00000572809 SPINK8P0C7L1 97 aa4.53□□□□□ -1.68
NUP88-205ENST00000572809 NDUFA6P56556 154 aa4.53□□□□□ -1.68
NUP88-205ENST00000572809 RAB5BP61020 215 aa4.53□□□□□ -1.68
NUP88-205ENST00000572809 XAGE1AQ9HD64 81 aa4.53□□□□□ -1.68
NUP88-205ENST00000572809 A0A096LNJ9 63 aa4.52□□□□□ -1.69
NUP88-205ENST00000572809 H3BRM9 83 aa4.52□□□□□ -1.69
NUP88-205ENST00000572809 LBHQ53QV2 105 aaPredicted RBP4.52□□□□□ -1.69
NUP88-205ENST00000572809 DIRC1Q969H9 104 aa4.52□□□□□ -1.69
NUP88-205ENST00000572809 C22orf24Q9Y442 160 aa4.52□□□□□ -1.69
NUP88-205ENST00000572809 HBDP02042 147 aa4.51□□□□□ -1.69
NUP88-205ENST00000572809 IGLC3P0DOY3 106 aa4.51□□□□□ -1.69
NUP88-205ENST00000572809 PMCHL1Q16048 86 aa4.51□□□□□ -1.69
NUP88-205ENST00000572809 H0Y9J4 135 aa4.5□□□□□ -1.69
NUP88-205ENST00000572809 ATP5LO75964 103 aa4.5□□□□□ -1.69
NUP88-205ENST00000572809 RPL24P83731 157 aaKnown RBP4.5□□□□□ -1.69
NUP88-205ENST00000572809 BAGE3Q86Y29 109 aa4.5□□□□□ -1.69
NUP88-205ENST00000572809 YPEL4Q96NS1 127 aa4.5□□□□□ -1.69
NUP88-205ENST00000572809 ZNF22P17026 224 aaPredicted RBP4.49□□□□□ -1.69
NUP88-205ENST00000572809 LCE1AQ5T7P2 110 aa4.49□□□□□ -1.69
NUP88-205ENST00000572809 MRPL55Q7Z7F7 128 aaKnown RBP4.49□□□□□ -1.69
NUP88-205ENST00000572809 TP73-AS1Q9UF72 201 aa4.49□□□□□ -1.69
NUP88-205ENST00000572809 A4D1N5 150 aa4.48□□□□□ -1.69
NUP88-205ENST00000572809 C5orf52A6NGY3 159 aa4.48□□□□□ -1.69
NUP88-205ENST00000572809 NUPR1O60356 82 aa4.48□□□□□ -1.69
NUP88-205ENST00000572809 ZNF861PO60384 105 aa4.48□□□□□ -1.69
NUP88-205ENST00000572809 PFN2P35080 140 aa4.48□□□□□ -1.69
NUP88-205ENST00000572809 TMEM170BQ5T4T1 132 aa4.48□□□□□ -1.69
NUP88-205ENST00000572809 CHCHD1Q96BP2 118 aaKnown RBP4.48□□□□□ -1.69
NUP88-205ENST00000572809 LINC00167Q96N53 147 aa4.48□□□□□ -1.69
NUP88-205ENST00000572809 CHTOPQ9Y3Y2 248 aaKnown RBP4.48□□□□□ -1.69
NUP88-205ENST00000572809 C11orf86A6NJI1 115 aa4.47□□□□□ -1.69
NUP88-205ENST00000572809 RPL37AP8A6NKH3 93 aa4.47□□□□□ -1.69
NUP88-205ENST00000572809 TNXBP22105 4242 aa4.47□□□□□ -1.69
NUP88-205ENST00000572809 IGLV1-50A0A075B6I6 118 aa4.46□□□□□ -1.7
NUP88-205ENST00000572809 TRAV12-1A0A0B4J245 112 aa4.46□□□□□ -1.7
NUP88-205ENST00000572809 KRTAP1-4P0C5Y4 121 aa4.46□□□□□ -1.7
NUP88-205ENST00000572809 COX17Q14061 63 aa4.46□□□□□ -1.7
NUP88-205ENST00000572809 CBLN2Q8IUK8 224 aa4.46□□□□□ -1.7
NUP88-205ENST00000572809 NKAPP1Q8N9T2 125 aa4.46□□□□□ -1.7
NUP88-205ENST00000572809 IFI27L1Q96BM0 104 aa4.46□□□□□ -1.7
NUP88-205ENST00000572809 ZNF625Q96I27 306 aaPredicted RBP4.46□□□□□ -1.7
NUP88-205ENST00000572809 ERG28Q9UKR5 140 aa4.46□□□□□ -1.7
NUP88-205ENST00000572809 BCE1O60756 84 aa4.45□□□□□ -1.7
NUP88-205ENST00000572809 HSBP1O75506 76 aa4.45□□□□□ -1.7
NUP88-205ENST00000572809 TRGC2P03986 189 aa4.45□□□□□ -1.7
NUP88-205ENST00000572809 RPL28P46779 137 aaKnown RBP4.45□□□□□ -1.7
NUP88-205ENST00000572809 SFTA2Q6UW10 78 aa4.45□□□□□ -1.7
NUP88-205ENST00000572809 SLC7A5P1Q8MH63 180 aa4.45□□□□□ -1.7
NUP88-205ENST00000572809 FAM19A2Q8N3H0 131 aa4.45□□□□□ -1.7
NUP88-205ENST00000572809 SND1-IT1Q9HBX3 110 aa4.45□□□□□ -1.7
NUP88-205ENST00000572809 TMEM223A0PJW6 202 aa4.44□□□□□ -1.7
NUP88-205ENST00000572809 HMCN2Q8NDA2 5059 aa4.44□□□□□ -1.7
NUP88-205ENST00000572809 IGKV2-28A0A075B6P5 120 aa4.43□□□□□ -1.7
NUP88-205ENST00000572809 SCO1O75880 301 aa4.43□□□□□ -1.7
NUP88-205ENST00000572809 IGKV2D-28P01615 120 aa4.43□□□□□ -1.7
NUP88-205ENST00000572809 RPL13AP40429 203 aaKnown RBP4.43□□□□□ -1.7
NUP88-205ENST00000572809 LINC00158P58513 81 aa4.43□□□□□ -1.7
NUP88-205ENST00000572809 KRTAP10-6P60371 365 aaPredicted RBP4.43□□□□□ -1.7
NUP88-205ENST00000572809 A0A0U1RRA0 63 aa4.42□□□□□ -1.7
NUP88-205ENST00000572809 ATP6V1G1O75348 118 aa4.42□□□□□ -1.7
NUP88-205ENST00000572809 LEPROTL1O95214 131 aa4.42□□□□□ -1.7
NUP88-205ENST00000572809 UBE2AP49459 152 aa4.42□□□□□ -1.7
NUP88-205ENST00000572809 COLCA2A8K830 154 aa4.41□□□□□ -1.7
NUP88-205ENST00000572809 H0Y8G0 127 aa4.41□□□□□ -1.7
NUP88-205ENST00000572809 SERF1AO75920 110 aa4.41□□□□□ -1.7
NUP88-205ENST00000572809 HERV-K104P63124 156 aa4.41□□□□□ -1.7
NUP88-205ENST00000572809 LINC00587B1AMM8 73 aa4.4□□□□□ -1.71
NUP88-205ENST00000572809 SMIM13P0DJ93 91 aa4.4□□□□□ -1.71
NUP88-205ENST00000572809 CRYGAP11844 174 aa4.4□□□□□ -1.71
NUP88-205ENST00000572809 FABP4P15090 132 aa4.4□□□□□ -1.71
NUP88-205ENST00000572809 MEIG1Q5JSS6 88 aa4.4□□□□□ -1.71
NUP88-205ENST00000572809 KRTAP13-1Q8IUC0 172 aa4.4□□□□□ -1.71
NUP88-205ENST00000572809 Q8N9P0 234 aaPredicted RBP4.4□□□□□ -1.71
NUP88-205ENST00000572809 Q8NDZ9 215 aa4.4□□□□□ -1.71
NUP88-205ENST00000572809 TMEM126AQ9H061 195 aa4.4□□□□□ -1.71
NUP88-205ENST00000572809 A0A087X002 238 aa4.39□□□□□ -1.71
NUP88-205ENST00000572809 IGLV9-49A0A0B4J1Y8 123 aa4.39□□□□□ -1.71
NUP88-205ENST00000572809 MYMXA0A1B0GTQ4 84 aa4.39□□□□□ -1.71
NUP88-205ENST00000572809 TMEM238C9JI98 176 aa4.39□□□□□ -1.71
NUP88-205ENST00000572809 M0R378 163 aa4.39□□□□□ -1.71
NUP88-205ENST00000572809 FAM19A1Q7Z5A9 133 aa4.39□□□□□ -1.71
NUP88-205ENST00000572809 TYMSOSQ8TAI1 123 aa4.39□□□□□ -1.71
NUP88-205ENST00000572809 ANAPC11Q9NYG5 84 aa4.39□□□□□ -1.71
NUP88-205ENST00000572809 NDUFA12Q9UI09 145 aa4.39□□□□□ -1.71
NUP88-205ENST00000572809 HSPB8Q9UJY1 196 aa4.39□□□□□ -1.71
NUP88-205ENST00000572809 LEPROTO15243 131 aa4.38□□□□□ -1.71
NUP88-205ENST00000572809 PLNP26678 52 aa4.38□□□□□ -1.71
NUP88-205ENST00000572809 PRLHP81277 87 aa4.38□□□□□ -1.71
NUP88-205ENST00000572809 BOD1L2Q8IYS8 172 aa4.38□□□□□ -1.71
NUP88-205ENST00000572809 MIR7-3HGQ8N6C7 128 aa4.38□□□□□ -1.71
NUP88-205ENST00000572809 MAP1LC3CQ9BXW4 147 aa4.38□□□□□ -1.71
NUP88-205ENST00000572809 UBR4Q5T4S7 5183 aa4.37□□□□□ -1.71
NUP88-205ENST00000572809 IGKV2D-30A0A075B6S6 120 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms