RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 PTH2Q96A98 100 aa7.17□□□□□ -1.26
CDH3-208ENST00000569036 TRGV11A0A075B6L2 103 aa7.16□□□□□ -1.26
CDH3-208ENST00000569036 TRAV12-3A0A0B4J271 114 aa7.16□□□□□ -1.26
CDH3-208ENST00000569036 TRGV4A0A0C4DH28 118 aa7.16□□□□□ -1.26
CDH3-208ENST00000569036 J3KRW8 73 aa7.16□□□□□ -1.26
CDH3-208ENST00000569036 ZNF22P17026 224 aaPredicted RBP7.16□□□□□ -1.26
CDH3-208ENST00000569036 TIRAPP58753 221 aa7.16□□□□□ -1.26
CDH3-208ENST00000569036 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.16□□□□□ -1.26
CDH3-208ENST00000569036 TRBV7-7A0A0K0K1E9 115 aa7.15□□□□□ -1.26
CDH3-208ENST00000569036 M0QY20 66 aa7.15□□□□□ -1.26
CDH3-208ENST00000569036 MRPS36P82909 103 aaKnown RBP7.15□□□□□ -1.26
CDH3-208ENST00000569036 IGHV3-16A0A0C4DH30 117 aa7.14□□□□□ -1.27
CDH3-208ENST00000569036 TINCRA0A1B0GVN0 87 aa7.14□□□□□ -1.27
CDH3-208ENST00000569036 PANO1I0J062 215 aa7.14□□□□□ -1.27
CDH3-208ENST00000569036 MIAQ16674 131 aa7.14□□□□□ -1.27
CDH3-208ENST00000569036 Q1RN00 199 aa7.14□□□□□ -1.27
CDH3-208ENST00000569036 TIMM21Q9BVV7 248 aa7.14□□□□□ -1.27
CDH3-208ENST00000569036 TMEM126AQ9H061 195 aa7.14□□□□□ -1.27
CDH3-208ENST00000569036 IGLV4-3A0A075B6K6 122 aa7.13□□□□□ -1.27
CDH3-208ENST00000569036 TRAV8-3A0A0A6YYJ7 113 aa7.13□□□□□ -1.27
CDH3-208ENST00000569036 IGHV1-58A0A0C4DH39 117 aa7.13□□□□□ -1.27
CDH3-208ENST00000569036 LOC100131303A0A0U1RQF7 123 aa7.13□□□□□ -1.27
CDH3-208ENST00000569036 F5H697 171 aa7.13□□□□□ -1.27
CDH3-208ENST00000569036 LST1O00453 97 aa7.13□□□□□ -1.27
CDH3-208ENST00000569036 GNRH2O43555 120 aa7.13□□□□□ -1.27
CDH3-208ENST00000569036 MUSTN1Q8IVN3 82 aa7.13□□□□□ -1.27
CDH3-208ENST00000569036 Q8N3U1 123 aa7.13□□□□□ -1.27
CDH3-208ENST00000569036 IGHV1OR15-1A0A075B7D0 117 aa7.12□□□□□ -1.27
CDH3-208ENST00000569036 RPL39P62891 51 aaKnown RBP7.12□□□□□ -1.27
CDH3-208ENST00000569036 ZNF56Q15929 161 aa7.12□□□□□ -1.27
CDH3-208ENST00000569036 C2orf82Q6UX34 121 aa7.12□□□□□ -1.27
CDH3-208ENST00000569036 TMEM101Q96IK0 257 aa7.12□□□□□ -1.27
CDH3-208ENST00000569036 DNAJC30Q96LL9 226 aa7.12□□□□□ -1.27
CDH3-208ENST00000569036 LITAFQ99732 161 aa7.11□□□□□ -1.27
CDH3-208ENST00000569036 TRIAP1O43715 76 aa7.1□□□□□ -1.27
CDH3-208ENST00000569036 CIRBPQ14011 172 aaKnown RBP7.1□□□□□ -1.27
CDH3-208ENST00000569036 Q6ZQT7 251 aa7.1□□□□□ -1.27
CDH3-208ENST00000569036 IGLV5-45A0A087WSX0 123 aa7.09□□□□□ -1.27
CDH3-208ENST00000569036 EIF4EBP3O60516 100 aaPredicted RBP7.09□□□□□ -1.27
CDH3-208ENST00000569036 FAM19A3Q7Z5A8 133 aa7.09□□□□□ -1.27
CDH3-208ENST00000569036 TRAV4A0A0B4J268 109 aa7.08□□□□□ -1.28
CDH3-208ENST00000569036 NDUFA1O15239 70 aa7.08□□□□□ -1.28
CDH3-208ENST00000569036 CXCL5P42830 114 aa7.08□□□□□ -1.28
CDH3-208ENST00000569036 SFTA2Q6UW10 78 aa7.08□□□□□ -1.28
CDH3-208ENST00000569036 DAZ4Q86SG3 579 aaKnown RBP7.08□□□□□ -1.28
CDH3-208ENST00000569036 DAZ3Q9NR90 486 aaKnown RBP7.08□□□□□ -1.28
CDH3-208ENST00000569036 NDUFA12Q9UI09 145 aa7.08□□□□□ -1.28
CDH3-208ENST00000569036 A0A087WWL8 130 aa7.07□□□□□ -1.28
CDH3-208ENST00000569036 B5MCH6 92 aa7.07□□□□□ -1.28
CDH3-208ENST00000569036 H7C423 109 aa7.07□□□□□ -1.28
CDH3-208ENST00000569036 TRACP01848 142 aa7.07□□□□□ -1.28
CDH3-208ENST00000569036 REG3GQ6UW15 175 aa7.07□□□□□ -1.28
CDH3-208ENST00000569036 DAND5Q8N907 189 aa7.07□□□□□ -1.28
CDH3-208ENST00000569036 RMI2Q96E14 147 aa7.07□□□□□ -1.28
CDH3-208ENST00000569036 IGKV2D-24A0A075B6R9 120 aa7.06□□□□□ -1.28
CDH3-208ENST00000569036 KRTAP9-7A8MTY7 169 aa7.06□□□□□ -1.28
CDH3-208ENST00000569036 LINC00643Q86TS7 51 aa7.06□□□□□ -1.28
CDH3-208ENST00000569036 TEX49A0A1B0GTD5 131 aa7.05□□□□□ -1.28
CDH3-208ENST00000569036 COX7A2LO14548 114 aa7.05□□□□□ -1.28
CDH3-208ENST00000569036 HERVK_113P63121 156 aa7.05□□□□□ -1.28
CDH3-208ENST00000569036 HERV-K104P63124 156 aa7.05□□□□□ -1.28
CDH3-208ENST00000569036 C14orf177Q52M58 125 aa7.05□□□□□ -1.28
CDH3-208ENST00000569036 FAM74A4Q5TZK3 123 aa7.05□□□□□ -1.28
CDH3-208ENST00000569036 SDIM1Q6ZPB5 146 aa7.05□□□□□ -1.28
CDH3-208ENST00000569036 SPXQ9BT56 116 aa7.05□□□□□ -1.28
CDH3-208ENST00000569036 SS18L2Q9UHA2 77 aa7.05□□□□□ -1.28
CDH3-208ENST00000569036 PRR3P79522 188 aaKnown RBP7.04□□□□□ -1.28
CDH3-208ENST00000569036 C9orf163Q8N9P6 203 aa7.04□□□□□ -1.28
CDH3-208ENST00000569036 JPT2Q9H910 190 aa7.04□□□□□ -1.28
CDH3-208ENST00000569036 IGLV5-39A0A0G2JS06 123 aa7.03□□□□□ -1.28
CDH3-208ENST00000569036 UBE2D4Q9Y2X8 147 aa7.03□□□□□ -1.28
CDH3-208ENST00000569036 CSDC2Q9Y534 153 aaKnown RBP7.03□□□□□ -1.28
CDH3-208ENST00000569036 H7C2G1 150 aa7.02□□□□□ -1.29
CDH3-208ENST00000569036 PRSS2P07478 247 aa7.02□□□□□ -1.29
CDH3-208ENST00000569036 CFAP161Q6P656 301 aa7.02□□□□□ -1.29
CDH3-208ENST00000569036 C7orf33Q8WU49 177 aa7.02□□□□□ -1.29
CDH3-208ENST00000569036 A0A087WYN8 130 aa7.01□□□□□ -1.29
CDH3-208ENST00000569036 CCDC179H3BU77 68 aa7.01□□□□□ -1.29
CDH3-208ENST00000569036 UQCRQO14949 82 aa7.01□□□□□ -1.29
CDH3-208ENST00000569036 SPINK6Q6UWN8 80 aa7.01□□□□□ -1.29
CDH3-208ENST00000569036 CHCHD7Q9BUK0 85 aa7.01□□□□□ -1.29
CDH3-208ENST00000569036 MEIG1Q5JSS6 88 aa7□□□□□ -1.29
CDH3-208ENST00000569036 DGAT2L7PQ6IED9 249 aa7□□□□□ -1.29
CDH3-208ENST00000569036 FAM104AQ969W3 186 aa7□□□□□ -1.29
CDH3-208ENST00000569036 TRAV13-2A0A0B4J235 113 aa6.99□□□□□ -1.29
CDH3-208ENST00000569036 TRBV10-1A0A0K0K1A3 114 aa6.99□□□□□ -1.29
CDH3-208ENST00000569036 A0A1B0GX51 115 aa6.99□□□□□ -1.29
CDH3-208ENST00000569036 PRR4Q16378 134 aa6.99□□□□□ -1.29
CDH3-208ENST00000569036 ADAMTSL4-AS1Q5T5F5 129 aa6.99□□□□□ -1.29
CDH3-208ENST00000569036 LINC00308Q8TCZ7 52 aa6.99□□□□□ -1.29
CDH3-208ENST00000569036 OPRPNQ99935 248 aaPredicted RBP6.99□□□□□ -1.29
CDH3-208ENST00000569036 USP17L23D6RBM5 183 aa6.98□□□□□ -1.29
CDH3-208ENST00000569036 ATOX1O00244 68 aa6.98□□□□□ -1.29
CDH3-208ENST00000569036 C3orf22Q8N5N4 141 aa6.98□□□□□ -1.29
CDH3-208ENST00000569036 LINC00526Q96FQ7 95 aa6.98□□□□□ -1.29
CDH3-208ENST00000569036 IGHV3-64A0A075B6Q5 118 aa6.97□□□□□ -1.29
CDH3-208ENST00000569036 CHTF8P0CG12 524 aa6.97□□□□□ -1.29
CDH3-208ENST00000569036 C5orf38Q86SI9 138 aa6.97□□□□□ -1.29
CDH3-208ENST00000569036 SPACA4Q8TDM5 124 aa6.97□□□□□ -1.29
CDH3-208ENST00000569036 DPH3Q96FX2 82 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms