RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 PIGYQ3MUY2 71 aa1.4□□□□□ -2.19
SCFD1-211ENST00000554437 CNFNQ9BYD5 112 aa1.4□□□□□ -2.19
SCFD1-211ENST00000554437 KNTC1P50748 2209 aa1.4□□□□□ -2.19
SCFD1-211ENST00000554437 ANKRD50Q9ULJ7 1429 aa1.4□□□□□ -2.19
SCFD1-211ENST00000554437 CDC42BPGQ6DT37 1551 aa1.39□□□□□ -2.19
SCFD1-211ENST00000554437 ANKRD36A6QL64 1941 aa1.39□□□□□ -2.19
SCFD1-211ENST00000554437 I3L2K1 104 aa1.39□□□□□ -2.19
SCFD1-211ENST00000554437 COX6A2Q02221 97 aa1.39□□□□□ -2.19
SCFD1-211ENST00000554437 ZNF831Q5JPB2 1677 aa1.39□□□□□ -2.19
SCFD1-211ENST00000554437 LRRC37AA6NMS7 1700 aa1.38□□□□□ -2.19
SCFD1-211ENST00000554437 CACNA1CQ13936 2221 aa1.38□□□□□ -2.19
SCFD1-211ENST00000554437 GPR98Q8WXG9 6306 aa1.38□□□□□ -2.19
SCFD1-211ENST00000554437 SPTY2D1-AS1A0A0U1RR47 76 aa1.38□□□□□ -2.19
SCFD1-211ENST00000554437 RPL38P63173 70 aaKnown RBP1.38□□□□□ -2.19
SCFD1-211ENST00000554437 LMTK2Q8IWU2 1503 aa1.38□□□□□ -2.19
SCFD1-211ENST00000554437 CADP27708 2225 aa1.38□□□□□ -2.19
SCFD1-211ENST00000554437 ABCA9Q8IUA7 1624 aa1.37□□□□□ -2.19
SCFD1-211ENST00000554437 LCE6AA0A183 80 aa1.37□□□□□ -2.19
SCFD1-211ENST00000554437 SFTA3P0C7M3 94 aa1.37□□□□□ -2.19
SCFD1-211ENST00000554437 PRO0255Q9UI72 69 aa1.37□□□□□ -2.19
SCFD1-211ENST00000554437 ASXL3Q9C0F0 2248 aa1.37□□□□□ -2.19
SCFD1-211ENST00000554437 ITSN1Q15811 1721 aa1.37□□□□□ -2.19
SCFD1-211ENST00000554437 C3orf79P0CE67 100 aa1.36□□□□□ -2.19
SCFD1-211ENST00000554437 DEFB123Q8N688 67 aa1.36□□□□□ -2.19
SCFD1-211ENST00000554437 USMG5Q96IX5 58 aa1.36□□□□□ -2.19
SCFD1-211ENST00000554437 FAM103A1Q9BTL3 118 aaKnown RBP1.36□□□□□ -2.19
SCFD1-211ENST00000554437 CRIPTQ9P021 101 aa1.36□□□□□ -2.19
SCFD1-211ENST00000554437 JMJD1CQ15652 2540 aa1.36□□□□□ -2.19
SCFD1-211ENST00000554437 PAPPAQ13219 1627 aa1.36□□□□□ -2.19
SCFD1-211ENST00000554437 DIP2AQ14689 1571 aa1.35□□□□□ -2.19
SCFD1-211ENST00000554437 FXYD6-FXYD2A0A087WZ82 144 aa1.35□□□□□ -2.19
SCFD1-211ENST00000554437 ROS1P08922 2347 aa1.34□□□□□ -2.19
SCFD1-211ENST00000554437 CPSF4LA6NMK7 179 aaKnown RBP1.34□□□□□ -2.19
SCFD1-211ENST00000554437 COL6A6A6NMZ7 2263 aa1.34□□□□□ -2.2
SCFD1-211ENST00000554437 CCDC180Q9P1Z9 1646 aa1.33□□□□□ -2.2
SCFD1-211ENST00000554437 I3L3M4 83 aa1.33□□□□□ -2.2
SCFD1-211ENST00000554437 K7EQZ3 153 aa1.33□□□□□ -2.2
SCFD1-211ENST00000554437 SMIM5Q71RC9 77 aa1.33□□□□□ -2.2
SCFD1-211ENST00000554437 Q8IZM0 81 aa1.33□□□□□ -2.2
SCFD1-211ENST00000554437 PLCH1Q4KWH8 1693 aa1.32□□□□□ -2.2
SCFD1-211ENST00000554437 CFAP43Q8NDM7 1665 aa1.32□□□□□ -2.2
SCFD1-211ENST00000554437 POLR1AO95602 1720 aaPredicted RBP1.32□□□□□ -2.2
SCFD1-211ENST00000554437 NDUFA4O00483 81 aa1.32□□□□□ -2.2
SCFD1-211ENST00000554437 TIAM2Q8IVF5 1701 aa1.32□□□□□ -2.2
SCFD1-211ENST00000554437 TIAM1Q13009 1591 aa1.31□□□□□ -2.2
SCFD1-211ENST00000554437 CICQ96RK0 1608 aaPredicted RBP1.31□□□□□ -2.2
SCFD1-211ENST00000554437 EIF2AK4Q9P2K8 1649 aaKnown RBP1.31□□□□□ -2.2
SCFD1-211ENST00000554437 UBR3Q6ZT12 1888 aa1.31□□□□□ -2.2
SCFD1-211ENST00000554437 NAV3Q8IVL0 2385 aa1.3□□□□□ -2.2
SCFD1-211ENST00000554437 NHSQ6T4R5 1651 aa1.3□□□□□ -2.2
SCFD1-211ENST00000554437 QSER1Q2KHR3 1735 aa1.3□□□□□ -2.2
SCFD1-211ENST00000554437 ANKRD17O75179 2603 aaKnown RBP1.3□□□□□ -2.2
SCFD1-211ENST00000554437 RALGAPBQ86X10 1494 aa1.3□□□□□ -2.2
SCFD1-211ENST00000554437 ASH1LQ9NR48 2969 aaKnown RBP1.29□□□□□ -2.2
SCFD1-211ENST00000554437 WIZO95785 1651 aa1.29□□□□□ -2.2
SCFD1-211ENST00000554437 DOT1LQ8TEK3 1739 aa1.29□□□□□ -2.2
SCFD1-211ENST00000554437 ENHOQ6UWT2 76 aa1.29□□□□□ -2.2
SCFD1-211ENST00000554437 FMN2Q9NZ56 1722 aa1.29□□□□□ -2.2
SCFD1-211ENST00000554437 BCORQ6W2J9 1755 aa1.28□□□□□ -2.2
SCFD1-211ENST00000554437 FAM208BQ5VWN6 2430 aa1.27□□□□□ -2.21
SCFD1-211ENST00000554437 PARP4Q9UKK3 1724 aaKnown RBP1.27□□□□□ -2.21
SCFD1-211ENST00000554437 THOC2Q8NI27 1593 aaKnown RBP1.27□□□□□ -2.21
SCFD1-211ENST00000554437 LINC01549A6NIU2 74 aa1.27□□□□□ -2.21
SCFD1-211ENST00000554437 COX6B1P14854 86 aa1.27□□□□□ -2.21
SCFD1-211ENST00000554437 UBL5Q9BZL1 73 aa1.27□□□□□ -2.21
SCFD1-211ENST00000554437 RICTORQ6R327 1708 aa1.26□□□□□ -2.21
SCFD1-211ENST00000554437 EEA1Q15075 1411 aa1.26□□□□□ -2.21
SCFD1-211ENST00000554437 MRPL34Q9BQ48 92 aaKnown RBP1.26□□□□□ -2.21
SCFD1-211ENST00000554437 NWD1Q149M9 1564 aa1.25□□□□□ -2.21
SCFD1-211ENST00000554437 PRB3Q04118 309 aaPredicted RBP1.25□□□□□ -2.21
SCFD1-211ENST00000554437 CCL22O00626 93 aa1.24□□□□□ -2.21
SCFD1-211ENST00000554437 COL14A1Q05707 1796 aaKnown RBP1.24□□□□□ -2.21
SCFD1-211ENST00000554437 PREX1Q8TCU6 1659 aa1.23□□□□□ -2.21
SCFD1-211ENST00000554437 AHCTF1Q8WYP5 2266 aa1.23□□□□□ -2.21
SCFD1-211ENST00000554437 PLXNC1O60486 1568 aa1.23□□□□□ -2.21
SCFD1-211ENST00000554437 Q5VSD8 79 aa1.23□□□□□ -2.21
SCFD1-211ENST00000554437 GOLGA4Q13439 2230 aaKnown RBP1.23□□□□□ -2.21
SCFD1-211ENST00000554437 PREX2Q70Z35 1606 aa1.22□□□□□ -2.21
SCFD1-211ENST00000554437 ABCA6Q8N139 1617 aa1.22□□□□□ -2.21
SCFD1-211ENST00000554437 BIVM-ERCC5R4GMW8 1640 aa1.22□□□□□ -2.21
SCFD1-211ENST00000554437 SPRR1AP35321 89 aa1.21□□□□□ -2.22
SCFD1-211ENST00000554437 PRXQ9BXM0 1461 aa1.2□□□□□ -2.22
SCFD1-211ENST00000554437 COX6B2Q6YFQ2 88 aa1.2□□□□□ -2.22
SCFD1-211ENST00000554437 KCNQ1DNQ9H478 68 aa1.2□□□□□ -2.22
SCFD1-211ENST00000554437 NRAPQ86VF7 1730 aa1.2□□□□□ -2.22
SCFD1-211ENST00000554437 ABCA10Q8WWZ4 1543 aa1.2□□□□□ -2.22
SCFD1-211ENST00000554437 MRPL33O75394 65 aaKnown RBP1.19□□□□□ -2.22
SCFD1-211ENST00000554437 TSC2P49815 1807 aa1.18□□□□□ -2.22
SCFD1-211ENST00000554437 SPRR1BP22528 89 aa1.18□□□□□ -2.22
SCFD1-211ENST00000554437 URB1O60287 2271 aaKnown RBP1.18□□□□□ -2.22
SCFD1-211ENST00000554437 UNC79Q9P2D8 2635 aa1.18□□□□□ -2.22
SCFD1-211ENST00000554437 GLI2P10070 1586 aa1.17□□□□□ -2.22
SCFD1-211ENST00000554437 ABCC6O95255 1503 aa1.17□□□□□ -2.22
SCFD1-211ENST00000554437 DEFB105AQ8NG35 78 aa1.17□□□□□ -2.22
SCFD1-211ENST00000554437 APLNQ9ULZ1 77 aa1.17□□□□□ -2.22
SCFD1-211ENST00000554437 NESP48681 1621 aa1.17□□□□□ -2.22
SCFD1-211ENST00000554437 ALS2Q96Q42 1657 aa1.16□□□□□ -2.22
SCFD1-211ENST00000554437 DEFB131BA0A096LNP1 70 aa1.16□□□□□ -2.22
SCFD1-211ENST00000554437 ETDCA0A1B0GVM5 59 aa1.16□□□□□ -2.22
SCFD1-211ENST00000554437 DEFB114Q30KQ6 69 aa1.16□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms