RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 USP9XQ93008 2570 aaPredicted RBP1.18□□□□□ -2.22
LIMA1-207ENST00000551486 ANKRD11Q6UB99 2663 aaPredicted RBP1.18□□□□□ -2.22
LIMA1-207ENST00000551486 SHROOM3Q8TF72 1996 aa1.18□□□□□ -2.22
LIMA1-207ENST00000551486 IGLV4-69A0A075B6H9 119 aa1.18□□□□□ -2.22
LIMA1-207ENST00000551486 A0A0G2JQZ4 141 aa1.18□□□□□ -2.22
LIMA1-207ENST00000551486 NBDYA0A0U1RRE5 68 aa1.18□□□□□ -2.22
LIMA1-207ENST00000551486 ETDCA0A1B0GVM5 59 aa1.18□□□□□ -2.22
LIMA1-207ENST00000551486 TRBV6-4A0A1B0GX49 114 aa1.18□□□□□ -2.22
LIMA1-207ENST00000551486 IGKV4-1P06312 121 aa1.18□□□□□ -2.22
LIMA1-207ENST00000551486 PLCH1Q4KWH8 1693 aa1.18□□□□□ -2.22
LIMA1-207ENST00000551486 ZNF831Q5JPB2 1677 aa1.18□□□□□ -2.22
LIMA1-207ENST00000551486 MED12Q93074 2177 aa1.18□□□□□ -2.22
LIMA1-207ENST00000551486 QSER1Q2KHR3 1735 aa1.18□□□□□ -2.22
LIMA1-207ENST00000551486 GOLGA4Q13439 2230 aaKnown RBP1.17□□□□□ -2.22
LIMA1-207ENST00000551486 EYSQ5T1H1 3165 aa1.17□□□□□ -2.22
LIMA1-207ENST00000551486 IQGAP1P46940 1657 aa1.17□□□□□ -2.22
LIMA1-207ENST00000551486 CR1P17927 2039 aa1.17□□□□□ -2.22
LIMA1-207ENST00000551486 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.17□□□□□ -2.22
LIMA1-207ENST00000551486 IGKV2-40A0A087WW87 121 aaPredicted RBP1.17□□□□□ -2.22
LIMA1-207ENST00000551486 LOC110117498A0A087WWA1 95 aa1.17□□□□□ -2.22
LIMA1-207ENST00000551486 IGKV2-29A2NJV5 120 aaPredicted RBP1.17□□□□□ -2.22
LIMA1-207ENST00000551486 LOC730098B7Z3J9 87 aa1.17□□□□□ -2.22
LIMA1-207ENST00000551486 IGKV2D-40P01614 121 aaPredicted RBP1.17□□□□□ -2.22
LIMA1-207ENST00000551486 PRB3Q04118 309 aaPredicted RBP1.17□□□□□ -2.22
LIMA1-207ENST00000551486 TPRXLQ17RH7 258 aa1.17□□□□□ -2.22
LIMA1-207ENST00000551486 Q8N9L7 120 aa1.17□□□□□ -2.22
LIMA1-207ENST00000551486 CCL26Q9Y258 94 aa1.17□□□□□ -2.22
LIMA1-207ENST00000551486 TNCP24821 2201 aa1.17□□□□□ -2.22
LIMA1-207ENST00000551486 SIPA1L2Q9P2F8 1722 aaPredicted RBP1.17□□□□□ -2.22
LIMA1-207ENST00000551486 LAMA2P24043 3122 aaKnown RBP1.17□□□□□ -2.22
LIMA1-207ENST00000551486 LAMA4Q16363 1823 aa1.17□□□□□ -2.22
LIMA1-207ENST00000551486 PRR14LQ5THK1 2151 aa1.17□□□□□ -2.22
LIMA1-207ENST00000551486 DUOX1Q9NRD9 1551 aa1.17□□□□□ -2.22
LIMA1-207ENST00000551486 CELSR3Q9NYQ7 3312 aa1.17□□□□□ -2.22
LIMA1-207ENST00000551486 NHSQ6T4R5 1651 aa1.16□□□□□ -2.22
LIMA1-207ENST00000551486 RREB1Q92766 1687 aa1.16□□□□□ -2.22
LIMA1-207ENST00000551486 FAM208AQ9UK61 1670 aaKnown RBP1.16□□□□□ -2.22
LIMA1-207ENST00000551486 LRRC37A3O60309 1634 aa1.16□□□□□ -2.22
LIMA1-207ENST00000551486 HELZ2Q9BYK8 2649 aaKnown RBP1.16□□□□□ -2.22
LIMA1-207ENST00000551486 RICTORQ6R327 1708 aa1.16□□□□□ -2.22
LIMA1-207ENST00000551486 A0A1B0GU69 56 aa1.16□□□□□ -2.22
LIMA1-207ENST00000551486 M0R2N4 97 aa1.16□□□□□ -2.22
LIMA1-207ENST00000551486 COX7BP24311 80 aa1.16□□□□□ -2.22
LIMA1-207ENST00000551486 LINC00315P59091 139 aa1.16□□□□□ -2.22
LIMA1-207ENST00000551486 LINC01590Q5TEZ4 76 aa1.16□□□□□ -2.22
LIMA1-207ENST00000551486 DEFB132Q7Z7B7 95 aa1.16□□□□□ -2.22
LIMA1-207ENST00000551486 C5orf56Q8N8D9 126 aa1.16□□□□□ -2.22
LIMA1-207ENST00000551486 LINC00308Q8TCZ7 52 aa1.16□□□□□ -2.22
LIMA1-207ENST00000551486 PSORS1C2Q9UIG4 136 aa1.16□□□□□ -2.22
LIMA1-207ENST00000551486 SPTBN5Q9NRC6 3674 aaKnown RBP1.16□□□□□ -2.22
LIMA1-207ENST00000551486 PAPPA2Q9BXP8 1791 aa1.16□□□□□ -2.22
LIMA1-207ENST00000551486 TEP1Q99973 2627 aaKnown RBP1.16□□□□□ -2.22
LIMA1-207ENST00000551486 DOT1LQ8TEK3 1739 aa1.15□□□□□ -2.22
LIMA1-207ENST00000551486 A0A1W2PNN7 141 aa1.15□□□□□ -2.23
LIMA1-207ENST00000551486 HRES1P13985 223 aa1.15□□□□□ -2.23
LIMA1-207ENST00000551486 DEFB114Q30KQ6 69 aa1.15□□□□□ -2.23
LIMA1-207ENST00000551486 SPACA4Q8TDM5 124 aa1.15□□□□□ -2.23
LIMA1-207ENST00000551486 C4orf3Q8WVX3 66 aa1.15□□□□□ -2.23
LIMA1-207ENST00000551486 KCNQ1DNQ9H478 68 aa1.15□□□□□ -2.23
LIMA1-207ENST00000551486 COL4A1P02462 1669 aa1.15□□□□□ -2.23
LIMA1-207ENST00000551486 DDX60LQ5H9U9 1706 aaKnown RBP1.15□□□□□ -2.23
LIMA1-207ENST00000551486 NHSL1Q5SYE7 1610 aa1.15□□□□□ -2.23
LIMA1-207ENST00000551486 WDFY4Q6ZS81 3184 aa1.14□□□□□ -2.23
LIMA1-207ENST00000551486 MYO18BQ8IUG5 2567 aa1.14□□□□□ -2.23
LIMA1-207ENST00000551486 C3P01024 1663 aa1.14□□□□□ -2.23
LIMA1-207ENST00000551486 SHPRHQ149N8 1683 aa1.14□□□□□ -2.23
LIMA1-207ENST00000551486 IGLV6-57P01721 117 aa1.14□□□□□ -2.23
LIMA1-207ENST00000551486 ACYP2P14621 99 aa1.14□□□□□ -2.23
LIMA1-207ENST00000551486 LINC00158P58513 81 aa1.14□□□□□ -2.23
LIMA1-207ENST00000551486 RPL37AP61513 92 aaKnown RBP1.14□□□□□ -2.23
LIMA1-207ENST00000551486 Q6ZQY7 126 aa1.14□□□□□ -2.23
LIMA1-207ENST00000551486 SSBP3-AS1Q7Z2R9 100 aa1.14□□□□□ -2.23
LIMA1-207ENST00000551486 SMIM11BQ8TCY0 68 aa1.14□□□□□ -2.23
LIMA1-207ENST00000551486 SMIM2Q9BVW6 85 aa1.14□□□□□ -2.23
LIMA1-207ENST00000551486 CRIPTQ9P021 101 aa1.14□□□□□ -2.23
LIMA1-207ENST00000551486 PTPN13Q12923 2485 aa1.14□□□□□ -2.23
LIMA1-207ENST00000551486 SEC16AO15027 2179 aa1.14□□□□□ -2.23
LIMA1-207ENST00000551486 MUC2Q02817 5179 aa1.13□□□□□ -2.23
LIMA1-207ENST00000551486 TNRC6BQ9UPQ9 1833 aaKnown RBP1.13□□□□□ -2.23
LIMA1-207ENST00000551486 ASH1LQ9NR48 2969 aaKnown RBP1.13□□□□□ -2.23
LIMA1-207ENST00000551486 SHANK1Q9Y566 2161 aa1.13□□□□□ -2.23
LIMA1-207ENST00000551486 MUC3AQ02505 3323 aa1.13□□□□□ -2.23
LIMA1-207ENST00000551486 LY75O60449 1722 aa1.13□□□□□ -2.23
LIMA1-207ENST00000551486 H3BRN7 92 aa1.13□□□□□ -2.23
LIMA1-207ENST00000551486 COX17Q14061 63 aa1.13□□□□□ -2.23
LIMA1-207ENST00000551486 LY6EQ16553 131 aa1.13□□□□□ -2.23
LIMA1-207ENST00000551486 CNFNQ9BYD5 112 aa1.13□□□□□ -2.23
LIMA1-207ENST00000551486 PRO3102Q9H379 93 aa1.13□□□□□ -2.23
LIMA1-207ENST00000551486 CDKN2A-AS1Q9UH64 79 aa1.13□□□□□ -2.23
LIMA1-207ENST00000551486 DLEC1Q9Y238 1755 aa1.13□□□□□ -2.23
LIMA1-207ENST00000551486 FLNBO75369 2602 aaKnown RBP1.13□□□□□ -2.23
LIMA1-207ENST00000551486 E9PCH4 1651 aa1.13□□□□□ -2.23
LIMA1-207ENST00000551486 CFAP47Q6ZTR5 3102 aa1.13□□□□□ -2.23
LIMA1-207ENST00000551486 UNC80Q8N2C7 3258 aa1.13□□□□□ -2.23
LIMA1-207ENST00000551486 SETD2Q9BYW2 2564 aaPredicted RBP1.12□□□□□ -2.23
LIMA1-207ENST00000551486 TIAM2Q8IVF5 1701 aa1.12□□□□□ -2.23
LIMA1-207ENST00000551486 DDX60Q8IY21 1712 aaKnown RBP1.12□□□□□ -2.23
LIMA1-207ENST00000551486 NAV2Q8IVL1 2488 aa1.12□□□□□ -2.23
LIMA1-207ENST00000551486 DEFB134Q4QY38 66 aa1.12□□□□□ -2.23
LIMA1-207ENST00000551486 SPINK9Q5DT21 86 aa1.12□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms