RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 ZNF73O43830 326 aaPredicted RBP10.89□□□□□ -0.67
CUX1-211ENST00000546411 CCKP06307 115 aa10.88□□□□□ -0.67
CUX1-211ENST00000546411 COX17Q14061 63 aa10.88□□□□□ -0.67
CUX1-211ENST00000546411 Q8N814 137 aa10.87□□□□□ -0.67
CUX1-211ENST00000546411 LYPD5Q6UWN5 251 aa10.87□□□□□ -0.67
CUX1-211ENST00000546411 CELSR2Q9HCU4 2923 aa10.86□□□□□ -0.67
CUX1-211ENST00000546411 FBN2P35556 2912 aa10.86□□□□□ -0.67
CUX1-211ENST00000546411 GIG44P09565 113 aaPredicted RBP10.85□□□□□ -0.67
CUX1-211ENST00000546411 CDK2AP2O75956 126 aa10.85□□□□□ -0.67
CUX1-211ENST00000546411 TRAV10A0A0B4J240 114 aa10.85□□□□□ -0.67
CUX1-211ENST00000546411 USP17L23D6RBM5 183 aa10.85□□□□□ -0.67
CUX1-211ENST00000546411 C10orf25Q5T742 122 aa10.85□□□□□ -0.67
CUX1-211ENST00000546411 UBE2AP49459 152 aa10.84□□□□□ -0.67
CUX1-211ENST00000546411 FAM240AA0A1B0GVK7 77 aa10.84□□□□□ -0.67
CUX1-211ENST00000546411 C5orf47Q569G3 176 aa10.84□□□□□ -0.67
CUX1-211ENST00000546411 UQCRQO14949 82 aa10.83□□□□□ -0.68
CUX1-211ENST00000546411 M0R378 163 aa10.83□□□□□ -0.68
CUX1-211ENST00000546411 BPY2O14599 106 aa10.83□□□□□ -0.68
CUX1-211ENST00000546411 M0QXV9 152 aa10.82□□□□□ -0.68
CUX1-211ENST00000546411 PDE6GP18545 87 aa10.82□□□□□ -0.68
CUX1-211ENST00000546411 FAM19A1Q7Z5A9 133 aa10.82□□□□□ -0.68
CUX1-211ENST00000546411 KRTAP1-3Q8IUG1 177 aa10.82□□□□□ -0.68
CUX1-211ENST00000546411 LINC00846Q9NV44 126 aa10.82□□□□□ -0.68
CUX1-211ENST00000546411 M0R2N4 97 aa10.81□□□□□ -0.68
CUX1-211ENST00000546411 SBSPONQ8IVN8 264 aa10.81□□□□□ -0.68
CUX1-211ENST00000546411 CSNK1G2-AS1Q8NCQ2 148 aa10.8□□□□□ -0.68
CUX1-211ENST00000546411 Q6ZRU5 148 aa10.8□□□□□ -0.68
CUX1-211ENST00000546411 PPDPFQ9H3Y8 114 aa10.8□□□□□ -0.68
CUX1-211ENST00000546411 C3orf22Q8N5N4 141 aa10.79□□□□□ -0.68
CUX1-211ENST00000546411 IMUPQ9GZP8 106 aa10.79□□□□□ -0.68
CUX1-211ENST00000546411 C19orf73Q9NVV2 129 aa10.79□□□□□ -0.68
CUX1-211ENST00000546411 EGFEM1PQ0D2K5 195 aa10.78□□□□□ -0.68
CUX1-211ENST00000546411 H3BQ85 93 aa10.78□□□□□ -0.68
CUX1-211ENST00000546411 SMG1Q96Q15 3661 aaKnown RBP10.78□□□□□ -0.68
CUX1-211ENST00000546411 PLAC8L1A1L4L8 177 aa10.77□□□□□ -0.69
CUX1-211ENST00000546411 KLK5Q9Y337 293 aaPredicted RBP10.76□□□□□ -0.69
CUX1-211ENST00000546411 KRTAP10-3P60369 221 aa10.76□□□□□ -0.69
CUX1-211ENST00000546411 ESRGQ1W209 222 aa10.75□□□□□ -0.69
CUX1-211ENST00000546411 NSD1Q96L73 2696 aaPredicted RBP10.75□□□□□ -0.69
CUX1-211ENST00000546411 NDUFS5O43920 106 aa10.75□□□□□ -0.69
CUX1-211ENST00000546411 SNURFQ9Y675 71 aa10.75□□□□□ -0.69
CUX1-211ENST00000546411 Q6Q795 121 aa10.74□□□□□ -0.69
CUX1-211ENST00000546411 Q8NAQ8 132 aa10.74□□□□□ -0.69
CUX1-211ENST00000546411 APCP25054 2843 aa10.74□□□□□ -0.69
CUX1-211ENST00000546411 NDUFC2O95298 119 aa10.74□□□□□ -0.69
CUX1-211ENST00000546411 NDUFC2-KCTD14E9PQ53 114 aa10.73□□□□□ -0.69
CUX1-211ENST00000546411 SERP2Q8N6R1 65 aa10.73□□□□□ -0.69
CUX1-211ENST00000546411 LINC00575Q6W349 94 aa10.73□□□□□ -0.69
CUX1-211ENST00000546411 SPATA3Q8NHX4 192 aa10.72□□□□□ -0.69
CUX1-211ENST00000546411 CR1P17927 2039 aa10.72□□□□□ -0.69
CUX1-211ENST00000546411 COX7CP15954 63 aa10.72□□□□□ -0.69
CUX1-211ENST00000546411 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.72□□□□□ -0.69
CUX1-211ENST00000546411 Q6JHZ5 121 aa10.72□□□□□ -0.69
CUX1-211ENST00000546411 C6orf48Q9UBA6 75 aa10.72□□□□□ -0.69
CUX1-211ENST00000546411 J3KT08 172 aa10.71□□□□□ -0.69
CUX1-211ENST00000546411 ATP5EP2Q5VTU8 51 aa10.71□□□□□ -0.69
CUX1-211ENST00000546411 KRTAP1-1Q07627 177 aa10.7□□□□□ -0.7
CUX1-211ENST00000546411 KRTAP24-1Q3LI83 254 aa10.7□□□□□ -0.7
CUX1-211ENST00000546411 H0Y9J4 135 aa10.69□□□□□ -0.7
CUX1-211ENST00000546411 CSMD1Q96PZ7 3565 aa10.69□□□□□ -0.7
CUX1-211ENST00000546411 IL17DQ8TAD2 202 aa10.68□□□□□ -0.7
CUX1-211ENST00000546411 MUC7Q8TAX7 377 aa10.67□□□□□ -0.7
CUX1-211ENST00000546411 FAM104AQ969W3 186 aa10.66□□□□□ -0.7
CUX1-211ENST00000546411 LOC107984640A0A0U1RRK4 108 aa10.65□□□□□ -0.7
CUX1-211ENST00000546411 LINC01561Q8N1V8 128 aa10.64□□□□□ -0.71
CUX1-211ENST00000546411 MXRA5Q9NR99 2828 aa10.64□□□□□ -0.71
CUX1-211ENST00000546411 Q8N9L7 120 aa10.64□□□□□ -0.71
CUX1-211ENST00000546411 DHRS4-AS1Q9P1J3 65 aa10.64□□□□□ -0.71
CUX1-211ENST00000546411 HIVEP1P15822 2718 aa10.64□□□□□ -0.71
CUX1-211ENST00000546411 C14orf177Q52M58 125 aa10.63□□□□□ -0.71
CUX1-211ENST00000546411 WFDC13Q8IUB5 93 aa10.63□□□□□ -0.71
CUX1-211ENST00000546411 B9D2Q9BPU9 175 aa10.63□□□□□ -0.71
CUX1-211ENST00000546411 CELSR1Q9NYQ6 3014 aa10.63□□□□□ -0.71
CUX1-211ENST00000546411 NDUFB1O75438 58 aa10.62□□□□□ -0.71
CUX1-211ENST00000546411 Q6ZVQ6 151 aa10.62□□□□□ -0.71
CUX1-211ENST00000546411 TRBV7-7A0A0K0K1E9 115 aa10.61□□□□□ -0.71
CUX1-211ENST00000546411 PRR4Q16378 134 aa10.61□□□□□ -0.71
CUX1-211ENST00000546411 C1orf137Q5JT78 98 aa10.61□□□□□ -0.71
CUX1-211ENST00000546411 MP68P56378 58 aa10.6□□□□□ -0.71
CUX1-211ENST00000546411 LRCOL1A6NCL2 159 aa10.6□□□□□ -0.71
CUX1-211ENST00000546411 SVEP1Q4LDE5 3571 aa10.6□□□□□ -0.71
CUX1-211ENST00000546411 HRCT1Q6UXD1 115 aa10.6□□□□□ -0.71
CUX1-211ENST00000546411 C2orf48Q96LS8 159 aa10.6□□□□□ -0.71
CUX1-211ENST00000546411 DEFB116Q30KQ4 102 aa10.6□□□□□ -0.71
CUX1-211ENST00000546411 SMCR5Q8TEV8 140 aa10.59□□□□□ -0.71
CUX1-211ENST00000546411 FAM236DA0A1B0GTK5 79 aa10.59□□□□□ -0.71
CUX1-211ENST00000546411 FAM236CP0DP71 79 aa10.59□□□□□ -0.71
CUX1-211ENST00000546411 PRLHP81277 87 aa10.58□□□□□ -0.72
CUX1-211ENST00000546411 C7orf33Q8WU49 177 aa10.58□□□□□ -0.72
CUX1-211ENST00000546411 LINC01556Q5JQF7 62 aa10.58□□□□□ -0.72
CUX1-211ENST00000546411 KIAA0087Q14695 138 aa10.57□□□□□ -0.72
CUX1-211ENST00000546411 NIPBLQ6KC79 2804 aaeCLIP10.57□□□□□ -0.72
CUX1-211ENST00000546411 CUBNO60494 3623 aa10.56□□□□□ -0.72
CUX1-211ENST00000546411 LINC01547P58512 204 aaPredicted RBP10.56□□□□□ -0.72
CUX1-211ENST00000546411 C9orf129Q5T035 196 aaKnown RBP10.56□□□□□ -0.72
CUX1-211ENST00000546411 FAM19A3Q7Z5A8 133 aa10.56□□□□□ -0.72
CUX1-211ENST00000546411 MRPL55Q7Z7F7 128 aaKnown RBP10.56□□□□□ -0.72
CUX1-211ENST00000546411 FAM30AQ9NZY2 134 aa10.56□□□□□ -0.72
CUX1-211ENST00000546411 IGLV9-49A0A0B4J1Y8 123 aa10.55□□□□□ -0.72
CUX1-211ENST00000546411 TMEM258P61165 79 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms