RNA–Protein interactions for RNA: ENST00000542700.6

CHMP4A-209, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 3

Gene CHMP4A, Length 847 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-209ENST00000542700 CFAP161Q6P656 301 aa4.73□□□□□ -1.65
CHMP4A-209ENST00000542700 LINC01561Q8N1V8 128 aa4.73□□□□□ -1.65
CHMP4A-209ENST00000542700 SPACA4Q8TDM5 124 aa4.73□□□□□ -1.65
CHMP4A-209ENST00000542700 ORAOV1Q8WV07 137 aa4.73□□□□□ -1.65
CHMP4A-209ENST00000542700 TTTY13Q9BZ97 58 aa4.73□□□□□ -1.65
CHMP4A-209ENST00000542700 USP17L23D6RBM5 183 aa4.72□□□□□ -1.65
CHMP4A-209ENST00000542700 SCGB1D4Q6XE38 83 aa4.72□□□□□ -1.65
CHMP4A-209ENST00000542700 ZNF625Q96I27 306 aaPredicted RBP4.72□□□□□ -1.65
CHMP4A-209ENST00000542700 PLAC8Q9NZF1 115 aa4.72□□□□□ -1.65
CHMP4A-209ENST00000542700 NDUFA12Q9UI09 145 aa4.72□□□□□ -1.65
CHMP4A-209ENST00000542700 SYNE2Q8WXH0 6885 aaKnown RBP4.71□□□□□ -1.66
CHMP4A-209ENST00000542700 ZNF561-AS1K7EIQ3 104 aa4.71□□□□□ -1.66
CHMP4A-209ENST00000542700 TSPEAR-AS2P59090 65 aa4.71□□□□□ -1.66
CHMP4A-209ENST00000542700 CKS1BP61024 79 aa4.71□□□□□ -1.66
CHMP4A-209ENST00000542700 KRTAP26-1Q6PEX3 210 aa4.71□□□□□ -1.66
CHMP4A-209ENST00000542700 BOD1L2Q8IYS8 172 aa4.71□□□□□ -1.66
CHMP4A-209ENST00000542700 SSPOA2VEC9 5147 aa4.71□□□□□ -1.66
CHMP4A-209ENST00000542700 MUC17Q685J3 4493 aa4.71□□□□□ -1.66
CHMP4A-209ENST00000542700 IGLV5-39A0A0G2JS06 123 aa4.7□□□□□ -1.66
CHMP4A-209ENST00000542700 A0A0U1RRA0 63 aa4.7□□□□□ -1.66
CHMP4A-209ENST00000542700 DLEU1O43261 78 aa4.7□□□□□ -1.66
CHMP4A-209ENST00000542700 HIGD2BQ4VC39 106 aa4.7□□□□□ -1.66
CHMP4A-209ENST00000542700 MEIG1Q5JSS6 88 aa4.7□□□□□ -1.66
CHMP4A-209ENST00000542700 LINC00526Q96FQ7 95 aa4.7□□□□□ -1.66
CHMP4A-209ENST00000542700 TP73-AS1Q9UF72 201 aa4.7□□□□□ -1.66
CHMP4A-209ENST00000542700 A0A0J9YXY3 114 aa4.69□□□□□ -1.66
CHMP4A-209ENST00000542700 DDTP30046 118 aa4.69□□□□□ -1.66
CHMP4A-209ENST00000542700 CTAG1AP78358 180 aa4.69□□□□□ -1.66
CHMP4A-209ENST00000542700 SPAG11BQ08648 103 aa4.69□□□□□ -1.66
CHMP4A-209ENST00000542700 C2orf82Q6UX34 121 aa4.69□□□□□ -1.66
CHMP4A-209ENST00000542700 Q8IZM0 81 aa4.69□□□□□ -1.66
CHMP4A-209ENST00000542700 CDIP1Q9H305 208 aa4.69□□□□□ -1.66
CHMP4A-209ENST00000542700 FCGBPQ9Y6R7 5405 aaPredicted RBP4.68□□□□□ -1.66
CHMP4A-209ENST00000542700 NDUFA1O15239 70 aa4.68□□□□□ -1.66
CHMP4A-209ENST00000542700 CRYGAP11844 174 aa4.68□□□□□ -1.66
CHMP4A-209ENST00000542700 PFN2P35080 140 aa4.68□□□□□ -1.66
CHMP4A-209ENST00000542700 LINC00158P58513 81 aa4.68□□□□□ -1.66
CHMP4A-209ENST00000542700 HERV-K104P63124 156 aa4.68□□□□□ -1.66
CHMP4A-209ENST00000542700 KIAA0087Q14695 138 aa4.68□□□□□ -1.66
CHMP4A-209ENST00000542700 UNQ6190/PRO20217Q6UXQ8 127 aa4.68□□□□□ -1.66
CHMP4A-209ENST00000542700 CAMK2N2Q96S95 79 aa4.68□□□□□ -1.66
CHMP4A-209ENST00000542700 HIST1H4GQ99525 98 aa4.68□□□□□ -1.66
CHMP4A-209ENST00000542700 USH2AO75445 5202 aa4.67□□□□□ -1.66
CHMP4A-209ENST00000542700 LINC00587B1AMM8 73 aa4.67□□□□□ -1.66
CHMP4A-209ENST00000542700 CFC1BP0CG36 223 aa4.67□□□□□ -1.66
CHMP4A-209ENST00000542700 SMIM13P0DJ93 91 aa4.67□□□□□ -1.66
CHMP4A-209ENST00000542700 CXCL5P42830 114 aa4.67□□□□□ -1.66
CHMP4A-209ENST00000542700 CNBPP62633 177 aaKnown RBP4.67□□□□□ -1.66
CHMP4A-209ENST00000542700 C2orf91Q6ZV80 131 aa4.67□□□□□ -1.66
CHMP4A-209ENST00000542700 HIGD1BQ9P298 99 aa4.67□□□□□ -1.66
CHMP4A-209ENST00000542700 MACF1Q9UPN3 7388 aaKnown RBP4.67□□□□□ -1.66
CHMP4A-209ENST00000542700 TMEM238C9JI98 176 aa4.66□□□□□ -1.66
CHMP4A-209ENST00000542700 LORP23490 312 aaPredicted RBP4.66□□□□□ -1.66
CHMP4A-209ENST00000542700 HINT1P49773 126 aaPredicted RBP4.66□□□□□ -1.66
CHMP4A-209ENST00000542700 NPC2P61916 151 aa4.66□□□□□ -1.66
CHMP4A-209ENST00000542700 BATFQ16520 125 aa4.66□□□□□ -1.66
CHMP4A-209ENST00000542700 C10orf25Q5T742 122 aa4.66□□□□□ -1.66
CHMP4A-209ENST00000542700 SFTA2Q6UW10 78 aa4.66□□□□□ -1.66
CHMP4A-209ENST00000542700 C15orf56Q8N910 161 aa4.66□□□□□ -1.66
CHMP4A-209ENST00000542700 C2orf48Q96LS8 159 aa4.66□□□□□ -1.66
CHMP4A-209ENST00000542700 F8WDY8 70 aa4.65□□□□□ -1.67
CHMP4A-209ENST00000542700 TSPAN13O95857 204 aa4.65□□□□□ -1.67
CHMP4A-209ENST00000542700 PTTG1IPP53801 180 aa4.65□□□□□ -1.67
CHMP4A-209ENST00000542700 SYCNQ0VAF6 134 aa4.65□□□□□ -1.67
CHMP4A-209ENST00000542700 TAL2Q16559 108 aa4.65□□□□□ -1.67
CHMP4A-209ENST00000542700 C9orf116Q5BN46 136 aaPredicted RBP4.65□□□□□ -1.67
CHMP4A-209ENST00000542700 Q6ZRP5 223 aa4.65□□□□□ -1.67
CHMP4A-209ENST00000542700 MUSTN1Q8IVN3 82 aa4.65□□□□□ -1.67
CHMP4A-209ENST00000542700 ERG28Q9UKR5 140 aa4.65□□□□□ -1.67
CHMP4A-209ENST00000542700 GVQW2A0A096LPI5 108 aaPredicted RBP4.64□□□□□ -1.67
CHMP4A-209ENST00000542700 M0R143 59 aa4.64□□□□□ -1.67
CHMP4A-209ENST00000542700 TIMM17BO60830 172 aa4.64□□□□□ -1.67
CHMP4A-209ENST00000542700 HSD52Q0P140 79 aa4.64□□□□□ -1.67
CHMP4A-209ENST00000542700 ADAMTSL4-AS1Q5T5F5 129 aa4.64□□□□□ -1.67
CHMP4A-209ENST00000542700 DAND5Q8N907 189 aa4.64□□□□□ -1.67
CHMP4A-209ENST00000542700 SPANXB1Q9NS25 103 aaPredicted RBP4.64□□□□□ -1.67
CHMP4A-209ENST00000542700 IGKV2-24A0A0C4DH68 120 aa4.63□□□□□ -1.67
CHMP4A-209ENST00000542700 TRBV30A0A0K0K1B3 111 aa4.63□□□□□ -1.67
CHMP4A-209ENST00000542700 KRTAP10-6P60371 365 aaPredicted RBP4.63□□□□□ -1.67
CHMP4A-209ENST00000542700 Q6ZVH6 145 aa4.63□□□□□ -1.67
CHMP4A-209ENST00000542700 CEND1Q8N111 149 aa4.63□□□□□ -1.67
CHMP4A-209ENST00000542700 MIR7-3HGQ8N6C7 128 aa4.63□□□□□ -1.67
CHMP4A-209ENST00000542700 CARD19Q96LW7 228 aa4.63□□□□□ -1.67
CHMP4A-209ENST00000542700 C6orf48Q9UBA6 75 aa4.63□□□□□ -1.67
CHMP4A-209ENST00000542700 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.62□□□□□ -1.67
CHMP4A-209ENST00000542700 IFITM1P13164 125 aa4.62□□□□□ -1.67
CHMP4A-209ENST00000542700 MT1HP80294 61 aa4.62□□□□□ -1.67
CHMP4A-209ENST00000542700 COX17Q14061 63 aa4.62□□□□□ -1.67
CHMP4A-209ENST00000542700 BVES-AS1Q5T3Y7 98 aa4.62□□□□□ -1.67
CHMP4A-209ENST00000542700 LCE2CQ5TA81 110 aa4.62□□□□□ -1.67
CHMP4A-209ENST00000542700 LITAFQ99732 161 aa4.62□□□□□ -1.67
CHMP4A-209ENST00000542700 SPANXDQ9BXN6 97 aa4.62□□□□□ -1.67
CHMP4A-209ENST00000542700 KRTAP4-1Q9BYQ7 146 aa4.62□□□□□ -1.67
CHMP4A-209ENST00000542700 SPANXCQ9NY87 97 aa4.62□□□□□ -1.67
CHMP4A-209ENST00000542700 SLPIP03973 132 aa4.61□□□□□ -1.67
CHMP4A-209ENST00000542700 SMCPP49901 116 aaPredicted RBP4.61□□□□□ -1.67
CHMP4A-209ENST00000542700 RPL24P83731 157 aaKnown RBP4.61□□□□□ -1.67
CHMP4A-209ENST00000542700 RNF151Q2KHN1 245 aa4.61□□□□□ -1.67
CHMP4A-209ENST00000542700 GAGE2EQ4V326 116 aa4.61□□□□□ -1.67
CHMP4A-209ENST00000542700 LINC00308Q8TCZ7 52 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms