RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 CCL19Q99731 98 aa7.07□□□□□ -1.28
PDGFRB-207ENST00000520579 MAP6D1Q9H9H5 199 aa7.07□□□□□ -1.28
PDGFRB-207ENST00000520579 IGSF10Q6WRI0 2623 aa7.07□□□□□ -1.28
PDGFRB-207ENST00000520579 SPATA3Q8NHX4 192 aa7.07□□□□□ -1.28
PDGFRB-207ENST00000520579 USP24Q9UPU5 2620 aa7.07□□□□□ -1.28
PDGFRB-207ENST00000520579 A8MUN3 132 aa7.06□□□□□ -1.28
PDGFRB-207ENST00000520579 SETXQ7Z333 2677 aaKnown RBP7.06□□□□□ -1.28
PDGFRB-207ENST00000520579 LINC00269Q8N2A0 174 aa7.06□□□□□ -1.28
PDGFRB-207ENST00000520579 Q8N3U1 123 aa7.06□□□□□ -1.28
PDGFRB-207ENST00000520579 VPREB1P12018 145 aa7.06□□□□□ -1.28
PDGFRB-207ENST00000520579 ZNF843Q8N446 348 aa7.06□□□□□ -1.28
PDGFRB-207ENST00000520579 MSMBP08118 114 aa7.05□□□□□ -1.28
PDGFRB-207ENST00000520579 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.05□□□□□ -1.28
PDGFRB-207ENST00000520579 IGLV5-45A0A087WSX0 123 aa7.05□□□□□ -1.28
PDGFRB-207ENST00000520579 OVOL2Q9BRP0 275 aa7.05□□□□□ -1.28
PDGFRB-207ENST00000520579 IGHV4-28A0A0C4DH34 117 aa7.04□□□□□ -1.28
PDGFRB-207ENST00000520579 NREPQ16612 68 aa7.04□□□□□ -1.28
PDGFRB-207ENST00000520579 DEFB4AO15263 64 aa7.04□□□□□ -1.28
PDGFRB-207ENST00000520579 BBC3Q96PG8 261 aaPredicted RBP7.04□□□□□ -1.28
PDGFRB-207ENST00000520579 SERTAD4-AS1Q5TG53 156 aa7.03□□□□□ -1.28
PDGFRB-207ENST00000520579 B4DSR2 109 aa7.03□□□□□ -1.28
PDGFRB-207ENST00000520579 PRYO14603 147 aa7.03□□□□□ -1.28
PDGFRB-207ENST00000520579 HTN3P15516 51 aa7.03□□□□□ -1.28
PDGFRB-207ENST00000520579 H3BUA1 57 aa7.02□□□□□ -1.28
PDGFRB-207ENST00000520579 UNC79Q9P2D8 2635 aa7.02□□□□□ -1.29
PDGFRB-207ENST00000520579 TRBV10-1A0A0K0K1A3 114 aa7.01□□□□□ -1.29
PDGFRB-207ENST00000520579 NDUFS5O43920 106 aa7.01□□□□□ -1.29
PDGFRB-207ENST00000520579 Q6ZQY7 126 aa7.01□□□□□ -1.29
PDGFRB-207ENST00000520579 Q8N814 137 aa7.01□□□□□ -1.29
PDGFRB-207ENST00000520579 XAGE1AQ9HD64 81 aa7.01□□□□□ -1.29
PDGFRB-207ENST00000520579 DOPEY1Q5JWR5 2465 aa7.01□□□□□ -1.29
PDGFRB-207ENST00000520579 TRAV22A0A0B4J277 110 aa7.01□□□□□ -1.29
PDGFRB-207ENST00000520579 PRR26Q8N8Z3 221 aa7.01□□□□□ -1.29
PDGFRB-207ENST00000520579 TRBV6-4A0A1B0GX49 114 aa7.01□□□□□ -1.29
PDGFRB-207ENST00000520579 FAM19A3Q7Z5A8 133 aa7.01□□□□□ -1.29
PDGFRB-207ENST00000520579 A6NED7 52 aa7□□□□□ -1.29
PDGFRB-207ENST00000520579 Q6ZVQ6 151 aa7□□□□□ -1.29
PDGFRB-207ENST00000520579 CELA1Q9UNI1 258 aa7□□□□□ -1.29
PDGFRB-207ENST00000520579 NBPF19A0A087WUL8 3843 aa7□□□□□ -1.29
PDGFRB-207ENST00000520579 FLNBO75369 2602 aaKnown RBP7□□□□□ -1.29
PDGFRB-207ENST00000520579 LINC01356Q8N9X3 169 aa7□□□□□ -1.29
PDGFRB-207ENST00000520579 FBXL19-AS1Q494R0 122 aa7□□□□□ -1.29
PDGFRB-207ENST00000520579 Q6ZRP5 223 aa7□□□□□ -1.29
PDGFRB-207ENST00000520579 HIGD2AQ9BW72 106 aa7□□□□□ -1.29
PDGFRB-207ENST00000520579 LINC01547P58512 204 aaPredicted RBP6.99□□□□□ -1.29
PDGFRB-207ENST00000520579 DEFB105AQ8NG35 78 aa6.99□□□□□ -1.29
PDGFRB-207ENST00000520579 LINC00588Q9Y4M8 146 aa6.99□□□□□ -1.29
PDGFRB-207ENST00000520579 HECTD1Q9ULT8 2610 aa6.99□□□□□ -1.29
PDGFRB-207ENST00000520579 ZNF469Q96JG9 3925 aaPredicted RBP6.99□□□□□ -1.29
PDGFRB-207ENST00000520579 JMJD7-PLA2G4BH0Y9G9 81 aa6.99□□□□□ -1.29
PDGFRB-207ENST00000520579 ODF3L2Q3SX64 289 aa6.99□□□□□ -1.29
PDGFRB-207ENST00000520579 IBA57-AS1B1ANH7 110 aa6.99□□□□□ -1.29
PDGFRB-207ENST00000520579 LYRM9A8MSI8 78 aa6.98□□□□□ -1.29
PDGFRB-207ENST00000520579 HCG22E2RYF7 251 aa6.98□□□□□ -1.29
PDGFRB-207ENST00000520579 BPY2O14599 106 aa6.98□□□□□ -1.29
PDGFRB-207ENST00000520579 ANGP03950 147 aaKnown RBP6.98□□□□□ -1.29
PDGFRB-207ENST00000520579 GYPEP15421 78 aa6.98□□□□□ -1.29
PDGFRB-207ENST00000520579 SYCNQ0VAF6 134 aa6.98□□□□□ -1.29
PDGFRB-207ENST00000520579 KLK9Q2XQG4 91 aa6.98□□□□□ -1.29
PDGFRB-207ENST00000520579 C3orf84H3BNL1 204 aa6.98□□□□□ -1.29
PDGFRB-207ENST00000520579 AKAP9Q99996 3911 aa6.97□□□□□ -1.29
PDGFRB-207ENST00000520579 UBE2AP49459 152 aa6.97□□□□□ -1.29
PDGFRB-207ENST00000520579 A0A096LNT2 108 aa6.97□□□□□ -1.29
PDGFRB-207ENST00000520579 IGHV3OR16-9A0A0B4J2B5 98 aa6.97□□□□□ -1.29
PDGFRB-207ENST00000520579 LINC00959A0A1B0GUT2 108 aa6.97□□□□□ -1.29
PDGFRB-207ENST00000520579 DEFB114Q30KQ6 69 aa6.96□□□□□ -1.3
PDGFRB-207ENST00000520579 TRBV10-3A0A0K0K1G6 114 aa6.96□□□□□ -1.3
PDGFRB-207ENST00000520579 TRBV6-8A0A0A6YYG3 113 aa6.95□□□□□ -1.3
PDGFRB-207ENST00000520579 HELZ2Q9BYK8 2649 aaKnown RBP6.95□□□□□ -1.3
PDGFRB-207ENST00000520579 FLNAP21333 2647 aaKnown RBP6.95□□□□□ -1.3
PDGFRB-207ENST00000520579 NKAPP1Q8N9T2 125 aa6.95□□□□□ -1.3
PDGFRB-207ENST00000520579 PRR15LQ9BU68 103 aa6.95□□□□□ -1.3
PDGFRB-207ENST00000520579 UNQ6190/PRO20217Q6UXQ8 127 aa6.95□□□□□ -1.3
PDGFRB-207ENST00000520579 Q8NDZ9 215 aa6.95□□□□□ -1.3
PDGFRB-207ENST00000520579 C1orf64Q8NEQ6 169 aa6.95□□□□□ -1.3
PDGFRB-207ENST00000520579 C10orf25Q5T742 122 aa6.93□□□□□ -1.3
PDGFRB-207ENST00000520579 LCA10Q71F78 164 aa6.93□□□□□ -1.3
PDGFRB-207ENST00000520579 BAHCC1Q9P281 2608 aa6.93□□□□□ -1.3
PDGFRB-207ENST00000520579 LINC01006Q8NI28 216 aa6.93□□□□□ -1.3
PDGFRB-207ENST00000520579 ZNF702PQ9H963 129 aa6.93□□□□□ -1.3
PDGFRB-207ENST00000520579 FAM30AQ9NZY2 134 aa6.93□□□□□ -1.3
PDGFRB-207ENST00000520579 ITPR3Q14573 2671 aa6.92□□□□□ -1.3
PDGFRB-207ENST00000520579 TRBV7-4A0A0J9YYF1 115 aa6.92□□□□□ -1.3
PDGFRB-207ENST00000520579 BCE1O60756 84 aa6.92□□□□□ -1.3
PDGFRB-207ENST00000520579 C16orf90A8MZG2 172 aa6.92□□□□□ -1.3
PDGFRB-207ENST00000520579 hDV103S1A0JD37 113 aa6.92□□□□□ -1.3
PDGFRB-207ENST00000520579 Q1T7F1 81 aa6.92□□□□□ -1.3
PDGFRB-207ENST00000520579 C7orf65Q6ZTY9 151 aa6.91□□□□□ -1.3
PDGFRB-207ENST00000520579 OBSCN-AS1Q96MR7 158 aa6.91□□□□□ -1.3
PDGFRB-207ENST00000520579 Q6ZQT0 140 aa6.91□□□□□ -1.3
PDGFRB-207ENST00000520579 HIGD2BQ4VC39 106 aa6.9□□□□□ -1.3
PDGFRB-207ENST00000520579 Q6ZTC4 211 aa6.9□□□□□ -1.3
PDGFRB-207ENST00000520579 CHCHD10Q8WYQ3 142 aaPredicted RBP6.9□□□□□ -1.3
PDGFRB-207ENST00000520579 LINC00575Q6W349 94 aa6.89□□□□□ -1.31
PDGFRB-207ENST00000520579 KLK12Q9UKR0 248 aa6.89□□□□□ -1.31
PDGFRB-207ENST00000520579 SPAG11BQ08648 103 aa6.88□□□□□ -1.31
PDGFRB-207ENST00000520579 PRAC1Q96KF2 57 aa6.88□□□□□ -1.31
PDGFRB-207ENST00000520579 ATP11AUNQ6ZP68 121 aa6.88□□□□□ -1.31
PDGFRB-207ENST00000520579 MUC7Q8TAX7 377 aa6.87□□□□□ -1.31
PDGFRB-207ENST00000520579 DEFB116Q30KQ4 102 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms