RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 Q6ZTC4 211 aa5.77□□□□□ -1.49
LIMCH1-216ENST00000512820 CSNK1G2-AS1Q8NCQ2 148 aa5.77□□□□□ -1.49
LIMCH1-216ENST00000512820 SPATA3Q8NHX4 192 aa5.77□□□□□ -1.49
LIMCH1-216ENST00000512820 CXCL6P80162 114 aa5.76□□□□□ -1.49
LIMCH1-216ENST00000512820 FAM30AQ9NZY2 134 aa5.76□□□□□ -1.49
LIMCH1-216ENST00000512820 PLAC8L1A1L4L8 177 aa5.76□□□□□ -1.49
LIMCH1-216ENST00000512820 Q6ZQT0 140 aa5.76□□□□□ -1.49
LIMCH1-216ENST00000512820 EPG5Q9HCE0 2579 aa5.76□□□□□ -1.49
LIMCH1-216ENST00000512820 A0A0J9YWU9 116 aa5.76□□□□□ -1.49
LIMCH1-216ENST00000512820 C6orf48Q9UBA6 75 aa5.76□□□□□ -1.49
LIMCH1-216ENST00000512820 RPS28P62857 69 aaKnown RBP5.75□□□□□ -1.49
LIMCH1-216ENST00000512820 C2orf48Q96LS8 159 aa5.75□□□□□ -1.49
LIMCH1-216ENST00000512820 A0A096LNI7 61 aa5.75□□□□□ -1.49
LIMCH1-216ENST00000512820 H0Y9J4 135 aa5.75□□□□□ -1.49
LIMCH1-216ENST00000512820 C1orf137Q5JT78 98 aa5.75□□□□□ -1.49
LIMCH1-216ENST00000512820 TRAV10A0A0B4J240 114 aa5.74□□□□□ -1.49
LIMCH1-216ENST00000512820 FREM2Q5SZK8 3169 aa5.74□□□□□ -1.49
LIMCH1-216ENST00000512820 C9orf129Q5T035 196 aaKnown RBP5.74□□□□□ -1.49
LIMCH1-216ENST00000512820 PKIGQ9Y2B9 76 aa5.74□□□□□ -1.49
LIMCH1-216ENST00000512820 Q8N9L7 120 aa5.74□□□□□ -1.49
LIMCH1-216ENST00000512820 LOC110117498A0A087WWA1 95 aa5.74□□□□□ -1.49
LIMCH1-216ENST00000512820 USP34Q70CQ2 3546 aa5.73□□□□□ -1.49
LIMCH1-216ENST00000512820 WFDC13Q8IUB5 93 aa5.73□□□□□ -1.49
LIMCH1-216ENST00000512820 TMEM254Q8TBM7 123 aa5.73□□□□□ -1.49
LIMCH1-216ENST00000512820 COL6A3P12111 3177 aa5.73□□□□□ -1.49
LIMCH1-216ENST00000512820 C19orf73Q9NVV2 129 aa5.73□□□□□ -1.49
LIMCH1-216ENST00000512820 BOD1L1Q8NFC6 3051 aa5.73□□□□□ -1.49
LIMCH1-216ENST00000512820 PRR4Q16378 134 aa5.73□□□□□ -1.49
LIMCH1-216ENST00000512820 A0A0U1RQV1 116 aa5.72□□□□□ -1.49
LIMCH1-216ENST00000512820 B9D2Q9BPU9 175 aa5.72□□□□□ -1.49
LIMCH1-216ENST00000512820 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.72□□□□□ -1.49
LIMCH1-216ENST00000512820 PRYO14603 147 aa5.72□□□□□ -1.49
LIMCH1-216ENST00000512820 BCE1O60756 84 aa5.72□□□□□ -1.49
LIMCH1-216ENST00000512820 KIAA0087Q14695 138 aa5.71□□□□□ -1.49
LIMCH1-216ENST00000512820 ELOF1P60002 83 aaKnown RBP5.71□□□□□ -1.5
LIMCH1-216ENST00000512820 C14orf177Q52M58 125 aa5.71□□□□□ -1.5
LIMCH1-216ENST00000512820 ADGRG4Q8IZF6 3080 aa5.71□□□□□ -1.5
LIMCH1-216ENST00000512820 F8WDY8 70 aa5.7□□□□□ -1.5
LIMCH1-216ENST00000512820 IGLV6-57P01721 117 aa5.7□□□□□ -1.5
LIMCH1-216ENST00000512820 CENPEQ02224 2701 aa5.7□□□□□ -1.5
LIMCH1-216ENST00000512820 TRBV7-6A0A0J9YX20 115 aa5.69□□□□□ -1.5
LIMCH1-216ENST00000512820 Q8NAQ8 132 aa5.69□□□□□ -1.5
LIMCH1-216ENST00000512820 C4orf26Q17RF5 130 aa5.69□□□□□ -1.5
LIMCH1-216ENST00000512820 C7orf33Q8WU49 177 aa5.69□□□□□ -1.5
LIMCH1-216ENST00000512820 ESRGQ1W209 222 aa5.68□□□□□ -1.5
LIMCH1-216ENST00000512820 GVQW2A0A096LPI5 108 aaPredicted RBP5.68□□□□□ -1.5
LIMCH1-216ENST00000512820 LRCOL1A6NCL2 159 aa5.68□□□□□ -1.5
LIMCH1-216ENST00000512820 REG3GQ6UW15 175 aa5.68□□□□□ -1.5
LIMCH1-216ENST00000512820 LINC00612Q8N6U2 182 aa5.67□□□□□ -1.5
LIMCH1-216ENST00000512820 MRPL55Q7Z7F7 128 aaKnown RBP5.67□□□□□ -1.5
LIMCH1-216ENST00000512820 MAP1AP78559 2803 aaPredicted RBP5.67□□□□□ -1.5
LIMCH1-216ENST00000512820 TM2D3Q9BRN9 247 aa5.67□□□□□ -1.5
LIMCH1-216ENST00000512820 KALRNO60229 2985 aa5.66□□□□□ -1.5
LIMCH1-216ENST00000512820 LINC01556Q5JQF7 62 aa5.66□□□□□ -1.5
LIMCH1-216ENST00000512820 OBSCN-AS1Q96MR7 158 aa5.66□□□□□ -1.5
LIMCH1-216ENST00000512820 VPREB1P12018 145 aa5.66□□□□□ -1.5
LIMCH1-216ENST00000512820 C22orf24Q9Y442 160 aa5.66□□□□□ -1.5
LIMCH1-216ENST00000512820 LINC00167Q96N53 147 aa5.65□□□□□ -1.5
LIMCH1-216ENST00000512820 DEFB116Q30KQ4 102 aa5.65□□□□□ -1.51
LIMCH1-216ENST00000512820 SMIM29Q86T20 159 aa5.65□□□□□ -1.51
LIMCH1-216ENST00000512820 LINC00208Q96KT6 92 aa5.65□□□□□ -1.51
LIMCH1-216ENST00000512820 A0A087WSZ3 146 aa5.64□□□□□ -1.51
LIMCH1-216ENST00000512820 IGKV4-1P06312 121 aa5.64□□□□□ -1.51
LIMCH1-216ENST00000512820 H3BNG1 76 aa5.64□□□□□ -1.51
LIMCH1-216ENST00000512820 PRR34Q9NV39 138 aa5.64□□□□□ -1.51
LIMCH1-216ENST00000512820 V9GYY9 64 aa5.64□□□□□ -1.51
LIMCH1-216ENST00000512820 Q6ZRP5 223 aa5.63□□□□□ -1.51
LIMCH1-216ENST00000512820 KRTAP1-3Q8IUG1 177 aa5.63□□□□□ -1.51
LIMCH1-216ENST00000512820 HCG22E2RYF7 251 aa5.62□□□□□ -1.51
LIMCH1-216ENST00000512820 FASNP49327 2511 aaKnown RBP5.62□□□□□ -1.51
LIMCH1-216ENST00000512820 FLNAP21333 2647 aaKnown RBP5.62□□□□□ -1.51
LIMCH1-216ENST00000512820 Q9BRP9 147 aa5.62□□□□□ -1.51
LIMCH1-216ENST00000512820 PRLHP81277 87 aa5.62□□□□□ -1.51
LIMCH1-216ENST00000512820 SPTSSBQ8NFR3 76 aa5.62□□□□□ -1.51
LIMCH1-216ENST00000512820 KRTAP10-3P60369 221 aa5.62□□□□□ -1.51
LIMCH1-216ENST00000512820 Q6ZRX8 168 aa5.61□□□□□ -1.51
LIMCH1-216ENST00000512820 CHKB-CPT1BH3BT56 60 aa5.61□□□□□ -1.51
LIMCH1-216ENST00000512820 LINC00528Q8N1L1 170 aa5.61□□□□□ -1.51
LIMCH1-216ENST00000512820 C1orf195Q5TG92 126 aa5.61□□□□□ -1.51
LIMCH1-216ENST00000512820 TRBV7-4A0A0J9YYF1 115 aa5.6□□□□□ -1.51
LIMCH1-216ENST00000512820 M0R2N4 97 aa5.6□□□□□ -1.51
LIMCH1-216ENST00000512820 ST20-AS1Q8NBB2 130 aa5.6□□□□□ -1.51
LIMCH1-216ENST00000512820 Q8NBF4 154 aa5.6□□□□□ -1.51
LIMCH1-216ENST00000512820 LOC400499M0QZD8 3231 aa5.6□□□□□ -1.51
LIMCH1-216ENST00000512820 IGLV9-49A0A0B4J1Y8 123 aa5.6□□□□□ -1.51
LIMCH1-216ENST00000512820 CASC2Q6XLA1 102 aa5.6□□□□□ -1.51
LIMCH1-216ENST00000512820 PRO0628Q9UI54 55 aa5.6□□□□□ -1.51
LIMCH1-216ENST00000512820 A0A1B0GW54 56 aa5.6□□□□□ -1.51
LIMCH1-216ENST00000512820 TACC2O95359 2948 aa5.59□□□□□ -1.51
LIMCH1-216ENST00000512820 KLKP1Q107X0 134 aa5.59□□□□□ -1.51
LIMCH1-216ENST00000512820 LRBAP50851 2863 aa5.59□□□□□ -1.51
LIMCH1-216ENST00000512820 ATMQ13315 3056 aa5.59□□□□□ -1.51
LIMCH1-216ENST00000512820 PSPHP1O15172 72 aa5.58□□□□□ -1.52
LIMCH1-216ENST00000512820 H7BZZ5 65 aa5.58□□□□□ -1.52
LIMCH1-216ENST00000512820 SERTAD4-AS1Q5TG53 156 aa5.58□□□□□ -1.52
LIMCH1-216ENST00000512820 ITPR3Q14573 2671 aa5.58□□□□□ -1.52
LIMCH1-216ENST00000512820 H0Y9P7 68 aa5.57□□□□□ -1.52
LIMCH1-216ENST00000512820 C15orf56Q8N910 161 aa5.57□□□□□ -1.52
LIMCH1-216ENST00000512820 LINC00474Q9P2X8 69 aa5.57□□□□□ -1.52
LIMCH1-216ENST00000512820 DMXL2Q8TDJ6 3036 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms