RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 KRTAP10-3P60369 221 aa7.31□□□□□ -1.24
LIMCH1-205ENST00000503057 SPATA3Q8NHX4 192 aa7.31□□□□□ -1.24
LIMCH1-205ENST00000503057 C22orf24Q9Y442 160 aa7.31□□□□□ -1.24
LIMCH1-205ENST00000503057 SZT2Q5T011 3432 aa7.3□□□□□ -1.24
LIMCH1-205ENST00000503057 WFDC13Q8IUB5 93 aa7.3□□□□□ -1.24
LIMCH1-205ENST00000503057 BRK1Q8WUW1 75 aa7.3□□□□□ -1.24
LIMCH1-205ENST00000503057 FAM30AQ9NZY2 134 aa7.3□□□□□ -1.24
LIMCH1-205ENST00000503057 V9GYY9 64 aa7.3□□□□□ -1.24
LIMCH1-205ENST00000503057 Q6ZQT0 140 aa7.3□□□□□ -1.24
LIMCH1-205ENST00000503057 KRTAP24-1Q3LI83 254 aa7.29□□□□□ -1.24
LIMCH1-205ENST00000503057 IGLV6-57P01721 117 aa7.29□□□□□ -1.24
LIMCH1-205ENST00000503057 KRTAP1-1Q07627 177 aa7.28□□□□□ -1.24
LIMCH1-205ENST00000503057 MPLKIPQ8TAP9 179 aa7.28□□□□□ -1.24
LIMCH1-205ENST00000503057 DNAH14Q0VDD8 3507 aa7.28□□□□□ -1.24
LIMCH1-205ENST00000503057 BCE1O60756 84 aa7.27□□□□□ -1.25
LIMCH1-205ENST00000503057 Q9BRP9 147 aa7.27□□□□□ -1.25
LIMCH1-205ENST00000503057 SERP1Q9Y6X1 66 aa7.27□□□□□ -1.25
LIMCH1-205ENST00000503057 XIRP2A4UGR9 3374 aa7.27□□□□□ -1.25
LIMCH1-205ENST00000503057 IGLV9-49A0A0B4J1Y8 123 aa7.27□□□□□ -1.25
LIMCH1-205ENST00000503057 KIAA0087Q14695 138 aa7.26□□□□□ -1.25
LIMCH1-205ENST00000503057 PRR34Q9NV39 138 aa7.26□□□□□ -1.25
LIMCH1-205ENST00000503057 TRIOO75962 3097 aa7.26□□□□□ -1.25
LIMCH1-205ENST00000503057 A0A1B0GW54 56 aa7.26□□□□□ -1.25
LIMCH1-205ENST00000503057 CRYGAP11844 174 aa7.26□□□□□ -1.25
LIMCH1-205ENST00000503057 SMIM26A0A096LP01 95 aa7.26□□□□□ -1.25
LIMCH1-205ENST00000503057 SMCR5Q8TEV8 140 aa7.26□□□□□ -1.25
LIMCH1-205ENST00000503057 LINC00167Q96N53 147 aa7.25□□□□□ -1.25
LIMCH1-205ENST00000503057 FN1P02751 2386 aaKnown RBP7.25□□□□□ -1.25
LIMCH1-205ENST00000503057 DNAH10OSP0CZ25 163 aa7.24□□□□□ -1.25
LIMCH1-205ENST00000503057 VPREB1P12018 145 aa7.24□□□□□ -1.25
LIMCH1-205ENST00000503057 FAM104AQ969W3 186 aa7.24□□□□□ -1.25
LIMCH1-205ENST00000503057 NHLRC4P0CG21 123 aaPredicted RBP7.24□□□□□ -1.25
LIMCH1-205ENST00000503057 SETD2Q9BYW2 2564 aaPredicted RBP7.23□□□□□ -1.25
LIMCH1-205ENST00000503057 HRCT1Q6UXD1 115 aa7.23□□□□□ -1.25
LIMCH1-205ENST00000503057 Q6ZRX8 168 aa7.23□□□□□ -1.25
LIMCH1-205ENST00000503057 LINC00588Q9Y4M8 146 aa7.23□□□□□ -1.25
LIMCH1-205ENST00000503057 ZNF292O60281 2723 aa7.23□□□□□ -1.25
LIMCH1-205ENST00000503057 PRLHP81277 87 aa7.22□□□□□ -1.25
LIMCH1-205ENST00000503057 LY6G6CO95867 125 aa7.22□□□□□ -1.25
LIMCH1-205ENST00000503057 LINC01600Q96MT4 127 aa7.22□□□□□ -1.25
LIMCH1-205ENST00000503057 A0A087WSZ3 146 aa7.22□□□□□ -1.25
LIMCH1-205ENST00000503057 Q6ZRP5 223 aa7.22□□□□□ -1.25
LIMCH1-205ENST00000503057 TMEM254Q8TBM7 123 aa7.21□□□□□ -1.25
LIMCH1-205ENST00000503057 SEC61GP60059 68 aa7.21□□□□□ -1.26
LIMCH1-205ENST00000503057 ZFYVE26Q68DK2 2539 aa7.2□□□□□ -1.26
LIMCH1-205ENST00000503057 HCG22E2RYF7 251 aa7.2□□□□□ -1.26
LIMCH1-205ENST00000503057 KRTAP10-11P60412 298 aa7.2□□□□□ -1.26
LIMCH1-205ENST00000503057 LAMA1P25391 3075 aa7.2□□□□□ -1.26
LIMCH1-205ENST00000503057 IGLV5-52A0A0A0MRZ9 124 aa7.2□□□□□ -1.26
LIMCH1-205ENST00000503057 MTORP42345 2549 aa7.2□□□□□ -1.26
LIMCH1-205ENST00000503057 LRCOL1A6NCL2 159 aa7.19□□□□□ -1.26
LIMCH1-205ENST00000503057 CFAP54Q96N23 3096 aa7.19□□□□□ -1.26
LIMCH1-205ENST00000503057 CASC2Q6XLA1 102 aa7.19□□□□□ -1.26
LIMCH1-205ENST00000503057 Q8N9L7 120 aa7.18□□□□□ -1.26
LIMCH1-205ENST00000503057 MGAQ8IWI9 3026 aa7.18□□□□□ -1.26
LIMCH1-205ENST00000503057 SPINK6Q6UWN8 80 aa7.18□□□□□ -1.26
LIMCH1-205ENST00000503057 CR1P17927 2039 aa7.18□□□□□ -1.26
LIMCH1-205ENST00000503057 C16orf90A8MZG2 172 aa7.17□□□□□ -1.26
LIMCH1-205ENST00000503057 C15orf56Q8N910 161 aa7.17□□□□□ -1.26
LIMCH1-205ENST00000503057 SPTBN5Q9NRC6 3674 aaKnown RBP7.17□□□□□ -1.26
LIMCH1-205ENST00000503057 JMJD1CQ15652 2540 aa7.17□□□□□ -1.26
LIMCH1-205ENST00000503057 MDFIQ99750 246 aa7.17□□□□□ -1.26
LIMCH1-205ENST00000503057 KCNQ1DNQ9H478 68 aa7.17□□□□□ -1.26
LIMCH1-205ENST00000503057 Q8NBF4 154 aa7.16□□□□□ -1.26
LIMCH1-205ENST00000503057 LINC00208Q96KT6 92 aa7.16□□□□□ -1.26
LIMCH1-205ENST00000503057 ACANP16112 2415 aa7.16□□□□□ -1.26
LIMCH1-205ENST00000503057 PRR15LQ9BU68 103 aa7.16□□□□□ -1.26
LIMCH1-205ENST00000503057 VCANP13611 3396 aa7.16□□□□□ -1.26
LIMCH1-205ENST00000503057 LINC00528Q8N1L1 170 aa7.16□□□□□ -1.26
LIMCH1-205ENST00000503057 C1orf134Q5TEV5 83 aa7.15□□□□□ -1.26
LIMCH1-205ENST00000503057 AKAP13Q12802 2813 aa7.15□□□□□ -1.26
LIMCH1-205ENST00000503057 PRR4Q16378 134 aa7.15□□□□□ -1.26
LIMCH1-205ENST00000503057 SMIM29Q86T20 159 aa7.15□□□□□ -1.26
LIMCH1-205ENST00000503057 DEFB116Q30KQ4 102 aa7.14□□□□□ -1.27
LIMCH1-205ENST00000503057 SERTAD4-AS1Q5TG53 156 aa7.14□□□□□ -1.27
LIMCH1-205ENST00000503057 SPTSSBQ8NFR3 76 aa7.14□□□□□ -1.27
LIMCH1-205ENST00000503057 IGLV1-50A0A075B6I6 118 aa7.14□□□□□ -1.27
LIMCH1-205ENST00000503057 RPS28P62857 69 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-205ENST00000503057 LINC00476Q8WZB0 136 aa7.13□□□□□ -1.27
LIMCH1-205ENST00000503057 ST20-AS1Q8NBB2 130 aa7.13□□□□□ -1.27
LIMCH1-205ENST00000503057 IGHV6-1A0A0B4J1U7 121 aa7.12□□□□□ -1.27
LIMCH1-205ENST00000503057 H0Y9P7 68 aa7.12□□□□□ -1.27
LIMCH1-205ENST00000503057 TLX1NBP0CAT3 122 aa7.12□□□□□ -1.27
LIMCH1-205ENST00000503057 PLA2G2DQ9UNK4 145 aa7.12□□□□□ -1.27
LIMCH1-205ENST00000503057 FAM168BA1KXE4 195 aa7.11□□□□□ -1.27
LIMCH1-205ENST00000503057 VPS13AQ96RL7 3174 aa7.11□□□□□ -1.27
LIMCH1-205ENST00000503057 NBDYA0A0U1RRE5 68 aa7.11□□□□□ -1.27
LIMCH1-205ENST00000503057 CIRBP-AS1Q8TBR5 109 aa7.11□□□□□ -1.27
LIMCH1-205ENST00000503057 WDFY4Q6ZS81 3184 aa7.11□□□□□ -1.27
LIMCH1-205ENST00000503057 OBSCN-AS1Q96MR7 158 aa7.11□□□□□ -1.27
LIMCH1-205ENST00000503057 C9orf129Q5T035 196 aaKnown RBP7.11□□□□□ -1.27
LIMCH1-205ENST00000503057 PHF5AQ7RTV0 110 aaKnown RBP7.11□□□□□ -1.27
LIMCH1-205ENST00000503057 TRBV7-4A0A0J9YYF1 115 aa7.1□□□□□ -1.27
LIMCH1-205ENST00000503057 A0A0U1RQV1 116 aa7.1□□□□□ -1.27
LIMCH1-205ENST00000503057 hDV103S1A0JD37 113 aa7.1□□□□□ -1.27
LIMCH1-205ENST00000503057 REV3LO60673 3130 aa7.1□□□□□ -1.27
LIMCH1-205ENST00000503057 EPM2AB3EWF7 344 aa7.09□□□□□ -1.27
LIMCH1-205ENST00000503057 A6NED7 52 aa7.09□□□□□ -1.27
LIMCH1-205ENST00000503057 EPG5Q9HCE0 2579 aa7.09□□□□□ -1.27
LIMCH1-205ENST00000503057 K7EIL1 84 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms