RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 BAGE3Q86Y29 109 aa6.43□□□□□ -1.38
COL6A3-214ENST00000493608 YPEL4Q96NS1 127 aa6.43□□□□□ -1.38
COL6A3-214ENST00000493608 UBR4Q5T4S7 5183 aa6.43□□□□□ -1.38
COL6A3-214ENST00000493608 PFN2P35080 140 aa6.42□□□□□ -1.38
COL6A3-214ENST00000493608 MRPL55Q7Z7F7 128 aaKnown RBP6.42□□□□□ -1.38
COL6A3-214ENST00000493608 LINC00167Q96N53 147 aa6.42□□□□□ -1.38
COL6A3-214ENST00000493608 IGLV5-39A0A0G2JS06 123 aa6.41□□□□□ -1.38
COL6A3-214ENST00000493608 C11orf86A6NJI1 115 aa6.41□□□□□ -1.38
COL6A3-214ENST00000493608 SCO1O75880 301 aa6.41□□□□□ -1.38
COL6A3-214ENST00000493608 ATP5LO75964 103 aa6.41□□□□□ -1.38
COL6A3-214ENST00000493608 TMEM170BQ5T4T1 132 aa6.41□□□□□ -1.38
COL6A3-214ENST00000493608 CBLN2Q8IUK8 224 aa6.41□□□□□ -1.38
COL6A3-214ENST00000493608 ZNF625Q96I27 306 aaPredicted RBP6.41□□□□□ -1.38
COL6A3-214ENST00000493608 ZNF861PO60384 105 aa6.4□□□□□ -1.38
COL6A3-214ENST00000493608 KRTAP1-4P0C5Y4 121 aa6.4□□□□□ -1.38
COL6A3-214ENST00000493608 TP73-AS1Q9UF72 201 aa6.4□□□□□ -1.38
COL6A3-214ENST00000493608 NUPR1O60356 82 aa6.39□□□□□ -1.39
COL6A3-214ENST00000493608 CHTOPQ9Y3Y2 248 aaKnown RBP6.39□□□□□ -1.39
COL6A3-214ENST00000493608 SLC7A5P1Q8MH63 180 aa6.38□□□□□ -1.39
COL6A3-214ENST00000493608 FAM19A2Q8N3H0 131 aa6.38□□□□□ -1.39
COL6A3-214ENST00000493608 NKAPP1Q8N9T2 125 aa6.38□□□□□ -1.39
COL6A3-214ENST00000493608 IFI27L1Q96BM0 104 aa6.38□□□□□ -1.39
COL6A3-214ENST00000493608 BCE1O60756 84 aa6.37□□□□□ -1.39
COL6A3-214ENST00000493608 CHCHD1Q96BP2 118 aaKnown RBP6.37□□□□□ -1.39
COL6A3-214ENST00000493608 SND1-IT1Q9HBX3 110 aa6.37□□□□□ -1.39
COL6A3-214ENST00000493608 ERG28Q9UKR5 140 aa6.37□□□□□ -1.39
COL6A3-214ENST00000493608 IGLV1-50A0A075B6I6 118 aa6.36□□□□□ -1.39
COL6A3-214ENST00000493608 IGLV5-37A0A075B6J1 123 aa6.36□□□□□ -1.39
COL6A3-214ENST00000493608 IGKV2-28A0A075B6P5 120 aa6.36□□□□□ -1.39
COL6A3-214ENST00000493608 A0A0U1RRA0 63 aa6.36□□□□□ -1.39
COL6A3-214ENST00000493608 IGKV2D-28P01615 120 aa6.36□□□□□ -1.39
COL6A3-214ENST00000493608 TRGC2P03986 189 aa6.36□□□□□ -1.39
COL6A3-214ENST00000493608 LRP2P98164 4655 aa6.36□□□□□ -1.39
COL6A3-214ENST00000493608 H0Y8G0 127 aa6.35□□□□□ -1.39
COL6A3-214ENST00000493608 RPL28P46779 137 aaKnown RBP6.35□□□□□ -1.39
COL6A3-214ENST00000493608 LINC00158P58513 81 aa6.35□□□□□ -1.39
COL6A3-214ENST00000493608 ANAPC11Q9NYG5 84 aa6.35□□□□□ -1.39
COL6A3-214ENST00000493608 TRAV12-1A0A0B4J245 112 aa6.34□□□□□ -1.39
COL6A3-214ENST00000493608 TMEM223A0PJW6 202 aa6.34□□□□□ -1.39
COL6A3-214ENST00000493608 HSBP1O75506 76 aa6.34□□□□□ -1.39
COL6A3-214ENST00000493608 VPREB1P12018 145 aa6.34□□□□□ -1.39
COL6A3-214ENST00000493608 Q8NDZ9 215 aa6.34□□□□□ -1.39
COL6A3-214ENST00000493608 UBE2AP49459 152 aa6.33□□□□□ -1.4
COL6A3-214ENST00000493608 COX17Q14061 63 aa6.33□□□□□ -1.4
COL6A3-214ENST00000493608 A0A087X002 238 aa6.32□□□□□ -1.4
COL6A3-214ENST00000493608 TMEM238C9JI98 176 aa6.32□□□□□ -1.4
COL6A3-214ENST00000493608 RPL13AP40429 203 aaKnown RBP6.32□□□□□ -1.4
COL6A3-214ENST00000493608 RPL24P83731 157 aaKnown RBP6.32□□□□□ -1.4
COL6A3-214ENST00000493608 LPAP08519 4548 aa6.31□□□□□ -1.4
COL6A3-214ENST00000493608 SERF1AO75920 110 aa6.31□□□□□ -1.4
COL6A3-214ENST00000493608 TSPAN13O95857 204 aa6.31□□□□□ -1.4
COL6A3-214ENST00000493608 SMIM13P0DJ93 91 aa6.31□□□□□ -1.4
COL6A3-214ENST00000493608 PRLHP81277 87 aa6.31□□□□□ -1.4
COL6A3-214ENST00000493608 FAM19A1Q7Z5A9 133 aa6.31□□□□□ -1.4
COL6A3-214ENST00000493608 KRTAP13-1Q8IUC0 172 aa6.31□□□□□ -1.4
COL6A3-214ENST00000493608 FABP4P15090 132 aa6.3□□□□□ -1.4
COL6A3-214ENST00000493608 SFTA2Q6UW10 78 aa6.3□□□□□ -1.4
COL6A3-214ENST00000493608 TMEM126AQ9H061 195 aa6.3□□□□□ -1.4
COL6A3-214ENST00000493608 COLCA2A8K830 154 aa6.29□□□□□ -1.4
COL6A3-214ENST00000493608 ATP6V1G1O75348 118 aa6.29□□□□□ -1.4
COL6A3-214ENST00000493608 LEPROTL1O95214 131 aa6.29□□□□□ -1.4
COL6A3-214ENST00000493608 CRYGAP11844 174 aa6.29□□□□□ -1.4
COL6A3-214ENST00000493608 MEIG1Q5JSS6 88 aa6.29□□□□□ -1.4
COL6A3-214ENST00000493608 PMCHL2Q9BQD1 86 aa6.29□□□□□ -1.4
COL6A3-214ENST00000493608 M0R378 163 aa6.28□□□□□ -1.4
COL6A3-214ENST00000493608 PRR4Q16378 134 aa6.28□□□□□ -1.4
COL6A3-214ENST00000493608 MIR7-3HGQ8N6C7 128 aa6.28□□□□□ -1.4
COL6A3-214ENST00000493608 TYMSOSQ8TAI1 123 aa6.28□□□□□ -1.4
COL6A3-214ENST00000493608 TSPEAR-AS2P59090 65 aa6.27□□□□□ -1.41
COL6A3-214ENST00000493608 KRTAP13-2Q52LG2 175 aa6.27□□□□□ -1.41
COL6A3-214ENST00000493608 BOD1L2Q8IYS8 172 aa6.27□□□□□ -1.41
COL6A3-214ENST00000493608 NDUFA12Q9UI09 145 aa6.27□□□□□ -1.41
COL6A3-214ENST00000493608 NCR3O14931 201 aa6.26□□□□□ -1.41
COL6A3-214ENST00000493608 RNF213Q63HN8 5207 aa6.25□□□□□ -1.41
COL6A3-214ENST00000493608 MYMXA0A1B0GTQ4 84 aa6.25□□□□□ -1.41
COL6A3-214ENST00000493608 HERV-K104P63124 156 aa6.25□□□□□ -1.41
COL6A3-214ENST00000493608 DAND5Q8N907 189 aa6.25□□□□□ -1.41
COL6A3-214ENST00000493608 HSPB8Q9UJY1 196 aa6.25□□□□□ -1.41
COL6A3-214ENST00000493608 LEPROTO15243 131 aa6.24□□□□□ -1.41
COL6A3-214ENST00000493608 DPM2O94777 84 aa6.24□□□□□ -1.41
COL6A3-214ENST00000493608 PLEKHB2Q96CS7 222 aa6.24□□□□□ -1.41
COL6A3-214ENST00000493608 HIGD2AQ9BW72 106 aa6.24□□□□□ -1.41
COL6A3-214ENST00000493608 J3QQQ9 107 aa6.23□□□□□ -1.41
COL6A3-214ENST00000493608 IGKCP01834 107 aa6.23□□□□□ -1.41
COL6A3-214ENST00000493608 PLNP26678 52 aa6.23□□□□□ -1.41
COL6A3-214ENST00000493608 IGKV2D-26A0A0A0MRZ7 120 aa6.22□□□□□ -1.41
COL6A3-214ENST00000493608 LINC00587B1AMM8 73 aa6.22□□□□□ -1.41
COL6A3-214ENST00000493608 FAM229BQ4G0N7 80 aa6.22□□□□□ -1.41
COL6A3-214ENST00000493608 MAP1LC3CQ9BXW4 147 aa6.22□□□□□ -1.41
COL6A3-214ENST00000493608 TMA7Q9Y2S6 64 aaKnown RBP6.22□□□□□ -1.41
COL6A3-214ENST00000493608 TRBV10-3A0A0K0K1G6 114 aa6.21□□□□□ -1.42
COL6A3-214ENST00000493608 LGALS3P17931 250 aaKnown RBP6.21□□□□□ -1.42
COL6A3-214ENST00000493608 HERVK_113P61574 105 aa6.21□□□□□ -1.42
COL6A3-214ENST00000493608 C3orf22Q8N5N4 141 aa6.21□□□□□ -1.42
COL6A3-214ENST00000493608 PRYO14603 147 aa6.2□□□□□ -1.42
COL6A3-214ENST00000493608 HIST1H2BKO60814 126 aa6.2□□□□□ -1.42
COL6A3-214ENST00000493608 HIST1H2BJP06899 126 aa6.2□□□□□ -1.42
COL6A3-214ENST00000493608 HIST1H2BOP23527 126 aa6.2□□□□□ -1.42
COL6A3-214ENST00000493608 HIST1H2BBP33778 126 aa6.2□□□□□ -1.42
COL6A3-214ENST00000493608 HIST1H2BDP58876 126 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms