RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 KIAA0556O60303 1618 aa1.41□□□□□ -2.18
HMGB1P38-201ENST00000490557 A0A0D9SFI3 127 aa1.41□□□□□ -2.18
HMGB1P38-201ENST00000490557 RPL38P63173 70 aaKnown RBP1.41□□□□□ -2.18
HMGB1P38-201ENST00000490557 A0A0G2JMZ2 1700 aa1.4□□□□□ -2.18
HMGB1P38-201ENST00000490557 PKD1L3Q7Z443 1732 aa1.4□□□□□ -2.18
HMGB1P38-201ENST00000490557 PAPPA2Q9BXP8 1791 aa1.4□□□□□ -2.19
HMGB1P38-201ENST00000490557 ABCA9Q8IUA7 1624 aa1.4□□□□□ -2.19
HMGB1P38-201ENST00000490557 CCDC180Q9P1Z9 1646 aa1.4□□□□□ -2.19
HMGB1P38-201ENST00000490557 TIAM1Q13009 1591 aa1.39□□□□□ -2.19
HMGB1P38-201ENST00000490557 ITSN1Q15811 1721 aa1.39□□□□□ -2.19
HMGB1P38-201ENST00000490557 USP32Q8NFA0 1604 aa1.39□□□□□ -2.19
HMGB1P38-201ENST00000490557 JMJD1CQ15652 2540 aa1.39□□□□□ -2.19
HMGB1P38-201ENST00000490557 DIP2AQ14689 1571 aa1.38□□□□□ -2.19
HMGB1P38-201ENST00000490557 SPTY2D1-AS1A0A0U1RR47 76 aa1.38□□□□□ -2.19
HMGB1P38-201ENST00000490557 LCE6AA0A183 80 aa1.38□□□□□ -2.19
HMGB1P38-201ENST00000490557 PIGYQ3MUY2 71 aa1.38□□□□□ -2.19
HMGB1P38-201ENST00000490557 TP53AIP1Q9HCN2 124 aa1.38□□□□□ -2.19
HMGB1P38-201ENST00000490557 PAPPAQ13219 1627 aa1.37□□□□□ -2.19
HMGB1P38-201ENST00000490557 ZFHX3Q15911 3703 aa1.37□□□□□ -2.19
HMGB1P38-201ENST00000490557 SLIT1O75093 1534 aa1.37□□□□□ -2.19
HMGB1P38-201ENST00000490557 TULP4Q9NRJ4 1543 aa1.37□□□□□ -2.19
HMGB1P38-201ENST00000490557 FAM103A1Q9BTL3 118 aaKnown RBP1.37□□□□□ -2.19
HMGB1P38-201ENST00000490557 CRIPTQ9P021 101 aa1.36□□□□□ -2.19
HMGB1P38-201ENST00000490557 RALGAPBQ86X10 1494 aa1.36□□□□□ -2.19
HMGB1P38-201ENST00000490557 PLXNB2O15031 1838 aa1.36□□□□□ -2.19
HMGB1P38-201ENST00000490557 ANKRD17O75179 2603 aaKnown RBP1.36□□□□□ -2.19
HMGB1P38-201ENST00000490557 URB1O60287 2271 aaKnown RBP1.35□□□□□ -2.19
HMGB1P38-201ENST00000490557 LINC01549A6NIU2 74 aa1.35□□□□□ -2.19
HMGB1P38-201ENST00000490557 NDUFA4O00483 81 aa1.35□□□□□ -2.19
HMGB1P38-201ENST00000490557 ENHOQ6UWT2 76 aa1.35□□□□□ -2.19
HMGB1P38-201ENST00000490557 USMG5Q96IX5 58 aa1.35□□□□□ -2.19
HMGB1P38-201ENST00000490557 CNFNQ9BYD5 112 aa1.35□□□□□ -2.19
HMGB1P38-201ENST00000490557 UBL5Q9BZL1 73 aa1.35□□□□□ -2.19
HMGB1P38-201ENST00000490557 PLCH1Q4KWH8 1693 aa1.35□□□□□ -2.19
HMGB1P38-201ENST00000490557 ZNF831Q5JPB2 1677 aa1.35□□□□□ -2.19
HMGB1P38-201ENST00000490557 LRRC37AA6NMS7 1700 aa1.35□□□□□ -2.19
HMGB1P38-201ENST00000490557 FAM208BQ5VWN6 2430 aa1.34□□□□□ -2.19
HMGB1P38-201ENST00000490557 CPSF4LA6NMK7 179 aaKnown RBP1.34□□□□□ -2.19
HMGB1P38-201ENST00000490557 UBR3Q6ZT12 1888 aa1.34□□□□□ -2.19
HMGB1P38-201ENST00000490557 COL6A6A6NMZ7 2263 aa1.34□□□□□ -2.2
HMGB1P38-201ENST00000490557 ROS1P08922 2347 aa1.34□□□□□ -2.2
HMGB1P38-201ENST00000490557 PLXNC1O60486 1568 aa1.34□□□□□ -2.2
HMGB1P38-201ENST00000490557 PREX2Q70Z35 1606 aa1.33□□□□□ -2.2
HMGB1P38-201ENST00000490557 NHSQ6T4R5 1651 aa1.33□□□□□ -2.2
HMGB1P38-201ENST00000490557 TIAM2Q8IVF5 1701 aa1.33□□□□□ -2.2
HMGB1P38-201ENST00000490557 I3L2K1 104 aa1.33□□□□□ -2.2
HMGB1P38-201ENST00000490557 I3L3M4 83 aa1.33□□□□□ -2.2
HMGB1P38-201ENST00000490557 COX6A2Q02221 97 aa1.33□□□□□ -2.2
HMGB1P38-201ENST00000490557 C10orf95Q9H7T3 257 aa1.33□□□□□ -2.2
HMGB1P38-201ENST00000490557 PRO0255Q9UI72 69 aa1.32□□□□□ -2.2
HMGB1P38-201ENST00000490557 LAMC1P11047 1609 aa1.32□□□□□ -2.2
HMGB1P38-201ENST00000490557 CFAP43Q8NDM7 1665 aa1.32□□□□□ -2.2
HMGB1P38-201ENST00000490557 CICQ96RK0 1608 aaPredicted RBP1.31□□□□□ -2.2
HMGB1P38-201ENST00000490557 EIF2AK4Q9P2K8 1649 aaKnown RBP1.31□□□□□ -2.2
HMGB1P38-201ENST00000490557 DEFB123Q8N688 67 aa1.31□□□□□ -2.2
HMGB1P38-201ENST00000490557 WIZO95785 1651 aa1.31□□□□□ -2.2
HMGB1P38-201ENST00000490557 FMN2Q9NZ56 1722 aa1.31□□□□□ -2.2
HMGB1P38-201ENST00000490557 PRXQ9BXM0 1461 aa1.31□□□□□ -2.2
HMGB1P38-201ENST00000490557 PREX1Q8TCU6 1659 aa1.3□□□□□ -2.2
HMGB1P38-201ENST00000490557 A0A0D9SG42 100 aa1.3□□□□□ -2.2
HMGB1P38-201ENST00000490557 Q8IZM0 81 aa1.3□□□□□ -2.2
HMGB1P38-201ENST00000490557 POLR1AO95602 1720 aaPredicted RBP1.29□□□□□ -2.2
HMGB1P38-201ENST00000490557 BCORQ6W2J9 1755 aa1.29□□□□□ -2.2
HMGB1P38-201ENST00000490557 K7EQZ3 153 aa1.29□□□□□ -2.2
HMGB1P38-201ENST00000490557 KRTAP10-4P60372 401 aaPredicted RBP1.29□□□□□ -2.2
HMGB1P38-201ENST00000490557 CACNA1EQ15878 2313 aa1.29□□□□□ -2.2
HMGB1P38-201ENST00000490557 ABCA10Q8WWZ4 1543 aa1.29□□□□□ -2.2
HMGB1P38-201ENST00000490557 FCER1GP30273 86 aa1.28□□□□□ -2.2
HMGB1P38-201ENST00000490557 ABCA6Q8N139 1617 aa1.28□□□□□ -2.2
HMGB1P38-201ENST00000490557 DOT1LQ8TEK3 1739 aa1.28□□□□□ -2.2
HMGB1P38-201ENST00000490557 DOPEY2Q9Y3R5 2298 aa1.27□□□□□ -2.21
HMGB1P38-201ENST00000490557 QSER1Q2KHR3 1735 aa1.27□□□□□ -2.21
HMGB1P38-201ENST00000490557 RICTORQ6R327 1708 aa1.27□□□□□ -2.21
HMGB1P38-201ENST00000490557 PARP4Q9UKK3 1724 aaKnown RBP1.27□□□□□ -2.21
HMGB1P38-201ENST00000490557 CPS1P31327 1500 aa1.27□□□□□ -2.21
HMGB1P38-201ENST00000490557 TNCP24821 2201 aa1.27□□□□□ -2.21
HMGB1P38-201ENST00000490557 MRPL33O75394 65 aaKnown RBP1.26□□□□□ -2.21
HMGB1P38-201ENST00000490557 MRPL34Q9BQ48 92 aaKnown RBP1.26□□□□□ -2.21
HMGB1P38-201ENST00000490557 COL14A1Q05707 1796 aaKnown RBP1.26□□□□□ -2.21
HMGB1P38-201ENST00000490557 PLCE1Q9P212 2302 aa1.25□□□□□ -2.21
HMGB1P38-201ENST00000490557 CCL22O00626 93 aa1.25□□□□□ -2.21
HMGB1P38-201ENST00000490557 FXYD6Q9H0Q3 95 aa1.25□□□□□ -2.21
HMGB1P38-201ENST00000490557 KCNQ1DNQ9H478 68 aa1.25□□□□□ -2.21
HMGB1P38-201ENST00000490557 ALS2Q96Q42 1657 aa1.25□□□□□ -2.21
HMGB1P38-201ENST00000490557 NWD1Q149M9 1564 aa1.25□□□□□ -2.21
HMGB1P38-201ENST00000490557 ETDCA0A1B0GVM5 59 aa1.24□□□□□ -2.21
HMGB1P38-201ENST00000490557 COX6B1P14854 86 aa1.24□□□□□ -2.21
HMGB1P38-201ENST00000490557 GLI2P10070 1586 aa1.23□□□□□ -2.21
HMGB1P38-201ENST00000490557 DEFB114Q30KQ6 69 aa1.23□□□□□ -2.21
HMGB1P38-201ENST00000490557 NMES1Q9C002 83 aa1.23□□□□□ -2.21
HMGB1P38-201ENST00000490557 ABCC6O95255 1503 aa1.23□□□□□ -2.21
HMGB1P38-201ENST00000490557 NRAPQ86VF7 1730 aa1.23□□□□□ -2.21
HMGB1P38-201ENST00000490557 MAST1Q9Y2H9 1570 aa1.22□□□□□ -2.21
HMGB1P38-201ENST00000490557 DEFB131BA0A096LNP1 70 aa1.22□□□□□ -2.21
HMGB1P38-201ENST00000490557 SERF2P84101 59 aa1.22□□□□□ -2.21
HMGB1P38-201ENST00000490557 COX6B2Q6YFQ2 88 aa1.22□□□□□ -2.21
HMGB1P38-201ENST00000490557 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.22□□□□□ -2.21
HMGB1P38-201ENST00000490557 SNRPGP15A8MWD9 76 aa1.21□□□□□ -2.22
HMGB1P38-201ENST00000490557 NESP48681 1621 aa1.21□□□□□ -2.22
HMGB1P38-201ENST00000490557 RNF17Q9BXT8 1623 aaKnown RBP1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms