RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 SPTY2D1-AS1A0A0U1RR47 76 aa0.07□□□□□ -2.4
RFC4-213ENST00000489028 PVALEFA0A1B0GWK0 134 aa0.07□□□□□ -2.4
RFC4-213ENST00000489028 LOC730098B7Z3J9 87 aa0.07□□□□□ -2.4
RFC4-213ENST00000489028 UBE2D4Q9Y2X8 147 aa0.07□□□□□ -2.4
RFC4-213ENST00000489028 NKTRP30414 1462 aaKnown RBP0.07□□□□□ -2.4
RFC4-213ENST00000489028 MACF1Q9UPN3 7388 aaKnown RBP0.07□□□□□ -2.4
RFC4-213ENST00000489028 SSPOA2VEC9 5147 aa0.07□□□□□ -2.4
RFC4-213ENST00000489028 SLIT1O75093 1534 aa0.07□□□□□ -2.4
RFC4-213ENST00000489028 CEP162Q5TB80 1403 aa0.06□□□□□ -2.4
RFC4-213ENST00000489028 C5P01031 1676 aa0.06□□□□□ -2.4
RFC4-213ENST00000489028 KLK9Q2XQG4 91 aa0.06□□□□□ -2.4
RFC4-213ENST00000489028 DEFB112Q30KQ8 113 aa0.06□□□□□ -2.4
RFC4-213ENST00000489028 MON2Q7Z3U7 1717 aa0.06□□□□□ -2.4
RFC4-213ENST00000489028 TTC37Q6PGP7 1564 aa0.06□□□□□ -2.4
RFC4-213ENST00000489028 PLIN4Q96Q06 1357 aa0.06□□□□□ -2.4
RFC4-213ENST00000489028 CCL22O00626 93 aa0.05□□□□□ -2.4
RFC4-213ENST00000489028 PRM1P04553 51 aa0.05□□□□□ -2.4
RFC4-213ENST00000489028 SPRR2DP22532 72 aa0.05□□□□□ -2.4
RFC4-213ENST00000489028 PLGLAQ15195 96 aa0.05□□□□□ -2.4
RFC4-213ENST00000489028 NMSQ5H8A3 153 aa0.05□□□□□ -2.4
RFC4-213ENST00000489028 MRPL34Q9BQ48 92 aaKnown RBP0.05□□□□□ -2.4
RFC4-213ENST00000489028 PKD1L1Q8TDX9 2849 aa0.05□□□□□ -2.4
RFC4-213ENST00000489028 CHD8Q9HCK8 2581 aa0.04□□□□□ -2.4
RFC4-213ENST00000489028 FMN2Q9NZ56 1722 aa0.04□□□□□ -2.4
RFC4-213ENST00000489028 HMCN2Q8NDA2 5059 aa0.04□□□□□ -2.4
RFC4-213ENST00000489028 FLNCQ14315 2725 aa0.04□□□□□ -2.4
RFC4-213ENST00000489028 A0A1B0GUT8 65 aa0.04□□□□□ -2.4
RFC4-213ENST00000489028 K7EP34 96 aa0.04□□□□□ -2.4
RFC4-213ENST00000489028 S100A16Q96FQ6 103 aaKnown RBP0.04□□□□□ -2.4
RFC4-213ENST00000489028 LPAP08519 4548 aa0.04□□□□□ -2.4
RFC4-213ENST00000489028 CLIP1P30622 1438 aa0.04□□□□□ -2.4
RFC4-213ENST00000489028 FAT2Q9NYQ8 4349 aa0.04□□□□□ -2.4
RFC4-213ENST00000489028 ATRQ13535 2644 aa0.03□□□□□ -2.4
RFC4-213ENST00000489028 EP300Q09472 2414 aaPredicted RBP0.03□□□□□ -2.4
RFC4-213ENST00000489028 CYB5AP00167 134 aa0.03□□□□□ -2.4
RFC4-213ENST00000489028 RABAC1Q9UI14 185 aa0.03□□□□□ -2.4
RFC4-213ENST00000489028 KIAA1551Q9HCM1 1747 aa0.03□□□□□ -2.4
RFC4-213ENST00000489028 CRYBG1Q9Y4K1 1723 aa0.03□□□□□ -2.4
RFC4-213ENST00000489028 ANKRD36A6QL64 1941 aa0.03□□□□□ -2.41
RFC4-213ENST00000489028 MAP1BP46821 2468 aaKnown RBP0.03□□□□□ -2.41
RFC4-213ENST00000489028 ABCC3O15438 1527 aa0.03□□□□□ -2.41
RFC4-213ENST00000489028 NSD1Q96L73 2696 aaPredicted RBP0.02□□□□□ -2.41
RFC4-213ENST00000489028 MYO3AQ8NEV4 1616 aa0.02□□□□□ -2.41
RFC4-213ENST00000489028 MYCBP2O75592 4640 aa0.02□□□□□ -2.41
RFC4-213ENST00000489028 IQCF6A8MYZ5 107 aa0.02□□□□□ -2.41
RFC4-213ENST00000489028 SNRPFP62306 86 aaKnown RBP0.02□□□□□ -2.41
RFC4-213ENST00000489028 H1FX-AS1Q4G0G2 97 aa0.02□□□□□ -2.41
RFC4-213ENST00000489028 MYH4Q9Y623 1939 aa0.02□□□□□ -2.41
RFC4-213ENST00000489028 KMT2AQ03164 3969 aa0.01□□□□□ -2.41
RFC4-213ENST00000489028 MYMXA0A1B0GTQ4 84 aa0.01□□□□□ -2.41
RFC4-213ENST00000489028 GNG2P59768 71 aa0.01□□□□□ -2.41
RFC4-213ENST00000489028 RPL38P63173 70 aaKnown RBP0.01□□□□□ -2.41
RFC4-213ENST00000489028 NEXMIFQ5QGS0 1516 aa0.01□□□□□ -2.41
RFC4-213ENST00000489028 WNK1Q9H4A3 2382 aa0.01□□□□□ -2.41
RFC4-213ENST00000489028 BSNQ9UPA5 3926 aa0□□□□□ -2.41
RFC4-213ENST00000489028 M0R2T5 61 aa0□□□□□ -2.41
RFC4-213ENST00000489028 COX7BP24311 80 aa0□□□□□ -2.41
RFC4-213ENST00000489028 ATP7BP35670 1465 aa0□□□□□ -2.41
RFC4-213ENST00000489028 HEPN1Q6WQI6 88 aa0□□□□□ -2.41
RFC4-213ENST00000489028 LINC00643Q86TS7 51 aa0□□□□□ -2.41
RFC4-213ENST00000489028 CDKN2A-AS1Q9UH64 79 aa0□□□□□ -2.41
RFC4-213ENST00000489028 TNXBP22105 4242 aa-0□□□□□ -2.41
RFC4-213ENST00000489028 ALMS1Q8TCU4 4167 aa-0□□□□□ -2.41
RFC4-213ENST00000489028 KIF20BQ96Q89 1820 aa-0.01□□□□□ -2.41
RFC4-213ENST00000489028 MAGI2Q86UL8 1455 aa-0.01□□□□□ -2.41
RFC4-213ENST00000489028 HSPG2P98160 4391 aa-0.01□□□□□ -2.41
RFC4-213ENST00000489028 ACYP1P07311 99 aa-0.01□□□□□ -2.41
RFC4-213ENST00000489028 C9orf62Q8N4C0 152 aa-0.01□□□□□ -2.41
RFC4-213ENST00000489028 GAFA1Q96PS6 74 aa-0.01□□□□□ -2.41
RFC4-213ENST00000489028 APC2O95996 2303 aa-0.01□□□□□ -2.41
RFC4-213ENST00000489028 ALKQ9UM73 1620 aa-0.02□□□□□ -2.41
RFC4-213ENST00000489028 FLNAP21333 2647 aaKnown RBP-0.02□□□□□ -2.41
RFC4-213ENST00000489028 RGPD4Q7Z3J3 1758 aa-0.02□□□□□ -2.41
RFC4-213ENST00000489028 UACAQ9BZF9 1416 aa-0.03□□□□□ -2.41
RFC4-213ENST00000489028 COL14A1Q05707 1796 aaKnown RBP-0.03□□□□□ -2.41
RFC4-213ENST00000489028 PKD1L3Q7Z443 1732 aa-0.03□□□□□ -2.41
RFC4-213ENST00000489028 KANTRA0A1W2PQU2 76 aa-0.03□□□□□ -2.41
RFC4-213ENST00000489028 CEBPZOSA8MTT3 80 aa-0.03□□□□□ -2.41
RFC4-213ENST00000489028 SMARCA2P51531 1590 aa-0.03□□□□□ -2.41
RFC4-213ENST00000489028 NDUFB1O75438 58 aa-0.04□□□□□ -2.42
RFC4-213ENST00000489028 COX6B2Q6YFQ2 88 aa-0.04□□□□□ -2.42
RFC4-213ENST00000489028 UBR3Q6ZT12 1888 aa-0.04□□□□□ -2.42
RFC4-213ENST00000489028 LRRC7Q96NW7 1537 aa-0.04□□□□□ -2.42
RFC4-213ENST00000489028 LRRC9Q6ZRR7 1453 aa-0.04□□□□□ -2.42
RFC4-213ENST00000489028 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.04□□□□□ -2.422e-11■■■■■ 79.7
RFC4-213ENST00000489028 HECTD4Q9Y4D8 3996 aa-0.04□□□□□ -2.42
RFC4-213ENST00000489028 DCHS2Q6V1P9 2916 aa-0.05□□□□□ -2.42
RFC4-213ENST00000489028 SPRR2BP35325 72 aa-0.05□□□□□ -2.42
RFC4-213ENST00000489028 RGPD3A6NKT7 1758 aaPredicted RBP-0.05□□□□□ -2.42
RFC4-213ENST00000489028 QSER1Q2KHR3 1735 aa-0.06□□□□□ -2.42
RFC4-213ENST00000489028 UBR1Q8IWV7 1749 aa-0.06□□□□□ -2.42
RFC4-213ENST00000489028 TRAV21A0A0B4J279 112 aa-0.06□□□□□ -2.42
RFC4-213ENST00000489028 WFDC9Q8NEX5 89 aa-0.06□□□□□ -2.42
RFC4-213ENST00000489028 BCORQ6W2J9 1755 aa-0.06□□□□□ -2.42
RFC4-213ENST00000489028 SETXQ7Z333 2677 aaKnown RBP-0.07□□□□□ -2.42
RFC4-213ENST00000489028 LRP2P98164 4655 aa-0.07□□□□□ -2.42
RFC4-213ENST00000489028 DEFB135Q30KP9 77 aa-0.07□□□□□ -2.42
RFC4-213ENST00000489028 WFDC13Q8IUB5 93 aa-0.07□□□□□ -2.42
RFC4-213ENST00000489028 KIF14Q15058 1648 aa-0.07□□□□□ -2.42
RFC4-213ENST00000489028 ACANP16112 2415 aa-0.07□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms