RNA–Protein interactions for RNA: ENST00000488325.5

HLA-DOB-209, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,188 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-209ENST00000488325 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.94□□□□□ -1.14
HLA-DOB-209ENST00000488325 TRBV30A0A0K0K1B3 111 aa7.94□□□□□ -1.14
HLA-DOB-209ENST00000488325 A0A0U1RRA0 63 aa7.94□□□□□ -1.14
HLA-DOB-209ENST00000488325 C6orf223Q8N319 242 aa7.94□□□□□ -1.14
HLA-DOB-209ENST00000488325 NHP2Q9NX24 153 aaKnown RBP7.94□□□□□ -1.14
HLA-DOB-209ENST00000488325 USP17L23D6RBM5 183 aa7.93□□□□□ -1.14
HLA-DOB-209ENST00000488325 PFN2P35080 140 aa7.93□□□□□ -1.14
HLA-DOB-209ENST00000488325 UNQ6190/PRO20217Q6UXQ8 127 aa7.93□□□□□ -1.14
HLA-DOB-209ENST00000488325 MIR7-3HGQ8N6C7 128 aa7.93□□□□□ -1.14
HLA-DOB-209ENST00000488325 LINC00308Q8TCZ7 52 aa7.93□□□□□ -1.14
HLA-DOB-209ENST00000488325 C14orf177Q52M58 125 aa7.92□□□□□ -1.14
HLA-DOB-209ENST00000488325 C4orf48Q5BLP8 95 aa7.92□□□□□ -1.14
HLA-DOB-209ENST00000488325 Q5VSD8 79 aa7.92□□□□□ -1.14
HLA-DOB-209ENST00000488325 DAND5Q8N907 189 aa7.92□□□□□ -1.14
HLA-DOB-209ENST00000488325 LINC00526Q96FQ7 95 aa7.92□□□□□ -1.14
HLA-DOB-209ENST00000488325 VPS13BQ7Z7G8 4022 aa7.91□□□□□ -1.14
HLA-DOB-209ENST00000488325 A0A1B0GWB2 263 aa7.91□□□□□ -1.14
HLA-DOB-209ENST00000488325 A4D1N5 150 aa7.91□□□□□ -1.14
HLA-DOB-209ENST00000488325 NPC2P61916 151 aa7.91□□□□□ -1.14
HLA-DOB-209ENST00000488325 SYCNQ0VAF6 134 aa7.91□□□□□ -1.14
HLA-DOB-209ENST00000488325 C10orf25Q5T742 122 aa7.9□□□□□ -1.14
HLA-DOB-209ENST00000488325 C6orf48Q9UBA6 75 aa7.9□□□□□ -1.14
HLA-DOB-209ENST00000488325 A0A0B4J2C4 111 aa7.89□□□□□ -1.15
HLA-DOB-209ENST00000488325 RNF151Q2KHN1 245 aa7.89□□□□□ -1.15
HLA-DOB-209ENST00000488325 Q6ZRU5 148 aa7.89□□□□□ -1.15
HLA-DOB-209ENST00000488325 RAB37Q96AX2 223 aa7.89□□□□□ -1.15
HLA-DOB-209ENST00000488325 CARD19Q96LW7 228 aa7.89□□□□□ -1.15
HLA-DOB-209ENST00000488325 TAX1BP3O14907 124 aa7.88□□□□□ -1.15
HLA-DOB-209ENST00000488325 C9orf116Q5BN46 136 aaPredicted RBP7.88□□□□□ -1.15
HLA-DOB-209ENST00000488325 SOSTDC1Q6X4U4 206 aa7.88□□□□□ -1.15
HLA-DOB-209ENST00000488325 LOC107984156A0A0G2JMH3 177 aa7.87□□□□□ -1.15
HLA-DOB-209ENST00000488325 CFC1BP0CG36 223 aa7.87□□□□□ -1.15
HLA-DOB-209ENST00000488325 CFC1P0CG37 223 aa7.87□□□□□ -1.15
HLA-DOB-209ENST00000488325 SERTAD4-AS1Q5TG53 156 aa7.87□□□□□ -1.15
HLA-DOB-209ENST00000488325 ARL17AQ8IVW1 177 aa7.87□□□□□ -1.15
HLA-DOB-209ENST00000488325 SND1-IT1Q9HBX3 110 aa7.87□□□□□ -1.15
HLA-DOB-209ENST00000488325 C9orf118A6NHY6 69 aa7.86□□□□□ -1.15
HLA-DOB-209ENST00000488325 K7ERJ3 54 aa7.86□□□□□ -1.15
HLA-DOB-209ENST00000488325 LECT2O14960 151 aa7.86□□□□□ -1.15
HLA-DOB-209ENST00000488325 KRTAP10-2P60368 255 aa7.86□□□□□ -1.15
HLA-DOB-209ENST00000488325 LCE2AQ5TA79 106 aaPredicted RBP7.86□□□□□ -1.15
HLA-DOB-209ENST00000488325 PRO1854Q9UHT4 67 aa7.86□□□□□ -1.15
HLA-DOB-209ENST00000488325 NDUFC2-KCTD14E9PQ53 114 aa7.85□□□□□ -1.15
HLA-DOB-209ENST00000488325 Q6ZRN7 208 aaPredicted RBP7.85□□□□□ -1.15
HLA-DOB-209ENST00000488325 TRAV13-2A0A0B4J235 113 aa7.84□□□□□ -1.15
HLA-DOB-209ENST00000488325 EIF4EBP3O60516 100 aaPredicted RBP7.84□□□□□ -1.15
HLA-DOB-209ENST00000488325 TLX1NBP0CAT3 122 aa7.84□□□□□ -1.15
HLA-DOB-209ENST00000488325 NDUFC2O95298 119 aa7.83□□□□□ -1.16
HLA-DOB-209ENST00000488325 XGP55808 180 aa7.83□□□□□ -1.16
HLA-DOB-209ENST00000488325 CNBPP62633 177 aaKnown RBP7.83□□□□□ -1.16
HLA-DOB-209ENST00000488325 PGPEP1Q9NXJ5 209 aa7.83□□□□□ -1.16
HLA-DOB-209ENST00000488325 PKIGQ9Y2B9 76 aa7.83□□□□□ -1.16
HLA-DOB-209ENST00000488325 A0A1B0GV90 55 aa7.82□□□□□ -1.16
HLA-DOB-209ENST00000488325 H3BUT2 72 aa7.82□□□□□ -1.16
HLA-DOB-209ENST00000488325 WFDC2Q14508 124 aa7.82□□□□□ -1.16
HLA-DOB-209ENST00000488325 Q1RN00 199 aa7.82□□□□□ -1.16
HLA-DOB-209ENST00000488325 LCE2CQ5TA81 110 aa7.82□□□□□ -1.16
HLA-DOB-209ENST00000488325 LYRM7Q5U5X0 104 aa7.82□□□□□ -1.16
HLA-DOB-209ENST00000488325 PLA2G2DQ9UNK4 145 aa7.82□□□□□ -1.16
HLA-DOB-209ENST00000488325 LOC107984640A0A0U1RRK4 108 aa7.81□□□□□ -1.16
HLA-DOB-209ENST00000488325 LRCOL1A6NCL2 159 aa7.81□□□□□ -1.16
HLA-DOB-209ENST00000488325 TSPAN13O95857 204 aa7.81□□□□□ -1.16
HLA-DOB-209ENST00000488325 SLPIP03973 132 aa7.81□□□□□ -1.16
HLA-DOB-209ENST00000488325 RPL13AP40429 203 aaKnown RBP7.81□□□□□ -1.16
HLA-DOB-209ENST00000488325 RPL18AQ02543 176 aaKnown RBP7.8□□□□□ -1.16
HLA-DOB-209ENST00000488325 GAGE2EQ4V326 116 aa7.8□□□□□ -1.16
HLA-DOB-209ENST00000488325 GAGE2DQ9UEU5 116 aa7.8□□□□□ -1.16
HLA-DOB-209ENST00000488325 RNF213Q63HN8 5207 aa7.79□□□□□ -1.16
HLA-DOB-209ENST00000488325 A0A1W2PPM0 123 aa7.79□□□□□ -1.16
HLA-DOB-209ENST00000488325 FABP2P12104 132 aa7.79□□□□□ -1.16
HLA-DOB-209ENST00000488325 VAMP3Q15836 100 aa7.79□□□□□ -1.16
HLA-DOB-209ENST00000488325 XAGE1AQ9HD64 81 aa7.79□□□□□ -1.16
HLA-DOB-209ENST00000488325 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.78□□□□□ -1.16
HLA-DOB-209ENST00000488325 IGKV2-28A0A075B6P5 120 aa7.78□□□□□ -1.16
HLA-DOB-209ENST00000488325 A0A087WTM6 91 aa7.78□□□□□ -1.16
HLA-DOB-209ENST00000488325 TRBV10-2A0A0K0K1G8 114 aa7.78□□□□□ -1.16
HLA-DOB-209ENST00000488325 H7C2G1 150 aa7.78□□□□□ -1.16
HLA-DOB-209ENST00000488325 IGKV2D-28P01615 120 aa7.78□□□□□ -1.16
HLA-DOB-209ENST00000488325 SMR3BP02814 79 aaPredicted RBP7.78□□□□□ -1.16
HLA-DOB-209ENST00000488325 PSMB2P49721 201 aa7.78□□□□□ -1.16
HLA-DOB-209ENST00000488325 Q6ZRP5 223 aa7.78□□□□□ -1.16
HLA-DOB-209ENST00000488325 Q8N814 137 aa7.78□□□□□ -1.16
HLA-DOB-209ENST00000488325 NAA38Q9BRA0 125 aaKnown RBP7.78□□□□□ -1.16
HLA-DOB-209ENST00000488325 KRTAP29-1A8MX34 341 aaPredicted RBP7.77□□□□□ -1.17
HLA-DOB-209ENST00000488325 OR13C6PQ8NH95 151 aa7.77□□□□□ -1.17
HLA-DOB-209ENST00000488325 COX6CP09669 75 aa7.76□□□□□ -1.17
HLA-DOB-209ENST00000488325 SCGB1C2P0DMR2 95 aa7.76□□□□□ -1.17
HLA-DOB-209ENST00000488325 GAGE2BQ13066 116 aa7.76□□□□□ -1.17
HLA-DOB-209ENST00000488325 GTF2H5Q6ZYL4 71 aa7.76□□□□□ -1.17
HLA-DOB-209ENST00000488325 LINC00337Q8N6G1 96 aa7.76□□□□□ -1.17
HLA-DOB-209ENST00000488325 FAM229AH3BQW9 127 aa7.75□□□□□ -1.17
HLA-DOB-209ENST00000488325 NCR3O14931 201 aa7.75□□□□□ -1.17
HLA-DOB-209ENST00000488325 S100A7L2Q5SY68 101 aa7.75□□□□□ -1.17
HLA-DOB-209ENST00000488325 C9orf163Q8N9P6 203 aa7.75□□□□□ -1.17
HLA-DOB-209ENST00000488325 TMEM126AQ9H061 195 aa7.75□□□□□ -1.17
HLA-DOB-209ENST00000488325 SPCS1Q9Y6A9 102 aa7.75□□□□□ -1.17
HLA-DOB-209ENST00000488325 VPREB1P12018 145 aa7.74□□□□□ -1.17
HLA-DOB-209ENST00000488325 CBY1Q9Y3M2 126 aa7.74□□□□□ -1.17
HLA-DOB-209ENST00000488325 GAGE10A6NGK3 116 aa7.73□□□□□ -1.17
HLA-DOB-209ENST00000488325 K7EP34 96 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms