RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520		Q8N814	137 aa		3.3	□□□□□ -1.88
PTCD3-212	ENST00000477520	FAM104A	Q969W3	186 aa		3.3	□□□□□ -1.88
PTCD3-212	ENST00000477520	LINC00467	Q9BRT7	94 aa		3.3	□□□□□ -1.88
PTCD3-212	ENST00000477520	CYP4F30P	Q9H0H9	118 aa		3.3	□□□□□ -1.88
PTCD3-212	ENST00000477520	LINC00474	Q9P2X8	69 aa		3.3	□□□□□ -1.88
PTCD3-212	ENST00000477520	MTOR	P42345	2549 aa		3.29	□□□□□ -1.88
PTCD3-212	ENST00000477520	IGHV4-61	A0A0C4DH41	118 aa		3.29	□□□□□ -1.88
PTCD3-212	ENST00000477520	TRBV10-1	A0A0K0K1A3	114 aa		3.29	□□□□□ -1.88
PTCD3-212	ENST00000477520	hDV103S1	A0JD37	113 aa		3.29	□□□□□ -1.88
PTCD3-212	ENST00000477520	IGKV2-29	A2NJV5	120 aa	Predicted RBP	3.29	□□□□□ -1.88
PTCD3-212	ENST00000477520		K7EQD1	137 aa		3.29	□□□□□ -1.88
PTCD3-212	ENST00000477520	IGHV3-53	P01767	116 aa		3.29	□□□□□ -1.88
PTCD3-212	ENST00000477520	LMO4	P61968	165 aa		3.29	□□□□□ -1.88
PTCD3-212	ENST00000477520	LINC00242	Q5T6M2	205 aa		3.29	□□□□□ -1.88
PTCD3-212	ENST00000477520	C10orf25	Q5T742	122 aa		3.29	□□□□□ -1.88
PTCD3-212	ENST00000477520	ATP11AUN	Q6ZP68	121 aa		3.29	□□□□□ -1.88
PTCD3-212	ENST00000477520		Q6ZQT0	140 aa		3.29	□□□□□ -1.88
PTCD3-212	ENST00000477520	C18orf65	Q6ZTR6	163 aa		3.29	□□□□□ -1.88
PTCD3-212	ENST00000477520		Q6ZVQ6	151 aa		3.29	□□□□□ -1.88
PTCD3-212	ENST00000477520	PHF5A	Q7RTV0	110 aa	Known RBP	3.29	□□□□□ -1.88
PTCD3-212	ENST00000477520	LINC00337	Q8N6G1	96 aa		3.29	□□□□□ -1.88
PTCD3-212	ENST00000477520		Q8N9W7	124 aa		3.29	□□□□□ -1.88
PTCD3-212	ENST00000477520		S4R3C0	116 aa		3.29	□□□□□ -1.88
PTCD3-212	ENST00000477520	CR1	P17927	2039 aa		3.29	□□□□□ -1.88
PTCD3-212	ENST00000477520	NACA	E9PAV3	2078 aa		3.28	□□□□□ -1.88
PTCD3-212	ENST00000477520	ZAN	Q9Y493	2812 aa		3.28	□□□□□ -1.88
PTCD3-212	ENST00000477520	ABCA2	Q9BZC7	2435 aa		3.28	□□□□□ -1.88
PTCD3-212	ENST00000477520	IGKV2-28	A0A075B6P5	120 aa		3.28	□□□□□ -1.88
PTCD3-212	ENST00000477520	IGHV3-35	A0A0C4DH35	117 aa		3.28	□□□□□ -1.88
PTCD3-212	ENST00000477520	BPY2	O14599	106 aa		3.28	□□□□□ -1.88
PTCD3-212	ENST00000477520	IGKV2D-28	P01615	120 aa		3.28	□□□□□ -1.88
PTCD3-212	ENST00000477520	MSMB	P08118	114 aa		3.28	□□□□□ -1.88
PTCD3-212	ENST00000477520	VPREB1	P12018	145 aa		3.28	□□□□□ -1.88
PTCD3-212	ENST00000477520	COX7A1	P24310	79 aa		3.28	□□□□□ -1.88
PTCD3-212	ENST00000477520	UBE2A	P49459	152 aa		3.28	□□□□□ -1.88
PTCD3-212	ENST00000477520	ELOF1	P60002	83 aa	Known RBP	3.28	□□□□□ -1.88
PTCD3-212	ENST00000477520	HAMP	P81172	84 aa		3.28	□□□□□ -1.88
PTCD3-212	ENST00000477520	COX17	Q14061	63 aa		3.28	□□□□□ -1.88
PTCD3-212	ENST00000477520	SS18	Q15532	418 aa		3.28	□□□□□ -1.88
PTCD3-212	ENST00000477520	MPLKIP	Q8TAP9	179 aa		3.28	□□□□□ -1.88
PTCD3-212	ENST00000477520	COX7B2	Q8TF08	81 aa		3.28	□□□□□ -1.88
PTCD3-212	ENST00000477520	LIMD2	Q9BT23	127 aa		3.28	□□□□□ -1.88
PTCD3-212	ENST00000477520	ESM1	Q9NQ30	184 aa		3.28	□□□□□ -1.88
PTCD3-212	ENST00000477520	SNURF	Q9Y675	71 aa		3.28	□□□□□ -1.88
PTCD3-212	ENST00000477520	HIVEP1	P15822	2718 aa		3.27	□□□□□ -1.89
PTCD3-212	ENST00000477520		A0A096LNT2	108 aa		3.27	□□□□□ -1.89
PTCD3-212	ENST00000477520	IGHV3-23	P01764	117 aa		3.27	□□□□□ -1.89
PTCD3-212	ENST00000477520	IGF1	P05019	195 aa		3.27	□□□□□ -1.89
PTCD3-212	ENST00000477520	IGHV4-31	P0DP07	118 aa		3.27	□□□□□ -1.89
PTCD3-212	ENST00000477520	HOXD3	P31249	432 aa	Predicted RBP	3.27	□□□□□ -1.89
PTCD3-212	ENST00000477520	LINC00158	P58513	81 aa		3.27	□□□□□ -1.89
PTCD3-212	ENST00000477520	NDP	Q00604	133 aa		3.27	□□□□□ -1.89
PTCD3-212	ENST00000477520	ECSCR	Q19T08	205 aa		3.27	□□□□□ -1.89
PTCD3-212	ENST00000477520	UNQ9165/PRO28630	Q6UXU0	137 aa		3.27	□□□□□ -1.89
PTCD3-212	ENST00000477520	NTM-AS1	Q6ZSK4	140 aa		3.27	□□□□□ -1.89
PTCD3-212	ENST00000477520	OTOG	Q6ZRI0	2925 aa		3.26	□□□□□ -1.89
PTCD3-212	ENST00000477520	IGHV3OR16-12	A0A075B7B8	117 aa		3.26	□□□□□ -1.89
PTCD3-212	ENST00000477520	TRBV6-8	A0A0A6YYG3	113 aa		3.26	□□□□□ -1.89
PTCD3-212	ENST00000477520	TRAV10	A0A0B4J240	114 aa		3.26	□□□□□ -1.89
PTCD3-212	ENST00000477520	IGHV3-66	A0A0C4DH42	116 aa		3.26	□□□□□ -1.89
PTCD3-212	ENST00000477520	LCE6A	A0A183	80 aa		3.26	□□□□□ -1.89
PTCD3-212	ENST00000477520	CCL18	P55774	89 aa		3.26	□□□□□ -1.89
PTCD3-212	ENST00000477520	C9orf129	Q5T035	196 aa	Known RBP	3.26	□□□□□ -1.89
PTCD3-212	ENST00000477520	MAPK1IP1L	Q8NDC0	245 aa		3.26	□□□□□ -1.89
PTCD3-212	ENST00000477520		A0A087X002	238 aa		3.25	□□□□□ -1.89
PTCD3-212	ENST00000477520	IGHV3-38	A0A0C4DH36	116 aa		3.25	□□□□□ -1.89
PTCD3-212	ENST00000477520		A8MTW9	85 aa		3.25	□□□□□ -1.89
PTCD3-212	ENST00000477520	ATP6V0E1	O15342	81 aa		3.25	□□□□□ -1.89
PTCD3-212	ENST00000477520	PRB4	P10163	310 aa	Predicted RBP	3.25	□□□□□ -1.89
PTCD3-212	ENST00000477520	LINC00575	Q6W349	94 aa		3.25	□□□□□ -1.89
PTCD3-212	ENST00000477520	RHPN1-AS1	Q9BWJ2	59 aa		3.25	□□□□□ -1.89
PTCD3-212	ENST00000477520	OCR1	Q9BZK8	76 aa		3.25	□□□□□ -1.89
PTCD3-212	ENST00000477520	CDC42SE2	Q9NRR3	84 aa		3.25	□□□□□ -1.89
PTCD3-212	ENST00000477520		Q9UF83	564 aa		3.25	□□□□□ -1.89
PTCD3-212	ENST00000477520	LINC00588	Q9Y4M8	146 aa		3.25	□□□□□ -1.89
PTCD3-212	ENST00000477520	CELSR1	Q9NYQ6	3014 aa		3.25	□□□□□ -1.89
PTCD3-212	ENST00000477520	TEP1	Q99973	2627 aa	Known RBP	3.25	□□□□□ -1.89
PTCD3-212	ENST00000477520	JMJD1C	Q15652	2540 aa		3.25	□□□□□ -1.89
PTCD3-212	ENST00000477520	NSD1	Q96L73	2696 aa	Predicted RBP	3.24	□□□□□ -1.89
PTCD3-212	ENST00000477520		M0R378	163 aa		3.24	□□□□□ -1.89
PTCD3-212	ENST00000477520	CCL24	O00175	119 aa		3.24	□□□□□ -1.89
PTCD3-212	ENST00000477520	COX6A2	Q02221	97 aa		3.24	□□□□□ -1.89
PTCD3-212	ENST00000477520	ASB16-AS1	Q495Z4	193 aa		3.24	□□□□□ -1.89
PTCD3-212	ENST00000477520	KHDC1L	Q5JSQ8	128 aa		3.24	□□□□□ -1.89
PTCD3-212	ENST00000477520	UNQ6493/PRO21345	Q6UXR8	122 aa	Predicted RBP	3.24	□□□□□ -1.89
PTCD3-212	ENST00000477520	C11orf72	Q8NBR9	251 aa		3.24	□□□□□ -1.89
PTCD3-212	ENST00000477520	WFDC9	Q8NEX5	89 aa		3.24	□□□□□ -1.89
PTCD3-212	ENST00000477520	RBM12B-AS1	Q9P1G2	102 aa		3.24	□□□□□ -1.89
PTCD3-212	ENST00000477520	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	3.23	□□□□□ -1.89
PTCD3-212	ENST00000477520	IGHV3OR16-8	A0A075B7F1	116 aa		3.23	□□□□□ -1.89
PTCD3-212	ENST00000477520	TRAV22	A0A0B4J277	110 aa		3.23	□□□□□ -1.89
PTCD3-212	ENST00000477520	LOC100131303	A0A0U1RQF7	123 aa		3.23	□□□□□ -1.89
PTCD3-212	ENST00000477520		H3BPC8	53 aa		3.23	□□□□□ -1.89
PTCD3-212	ENST00000477520		K7EQG2	157 aa		3.23	□□□□□ -1.89
PTCD3-212	ENST00000477520	COX7B	P24311	80 aa		3.23	□□□□□ -1.89
PTCD3-212	ENST00000477520	FAM229B	Q4G0N7	80 aa		3.23	□□□□□ -1.89
PTCD3-212	ENST00000477520		Q6ZRP5	223 aa		3.23	□□□□□ -1.89
PTCD3-212	ENST00000477520	LCA10	Q71F78	164 aa		3.23	□□□□□ -1.89
PTCD3-212	ENST00000477520		Q8IZM0	81 aa		3.23	□□□□□ -1.89
PTCD3-212	ENST00000477520	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	3.23	□□□□□ -1.89

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