RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 NOTCH2Q04721 2471 aa13.46□□□□□ -0.25
SDF4-205ENST00000465727 TEX15Q9BXT5 2789 aa13.45□□□□□ -0.26
SDF4-205ENST00000465727 IGLV6-57P01721 117 aa13.45□□□□□ -0.26
SDF4-205ENST00000465727 C9orf116Q5BN46 136 aaPredicted RBP13.45□□□□□ -0.26
SDF4-205ENST00000465727 AKAP9Q99996 3911 aa13.44□□□□□ -0.26
SDF4-205ENST00000465727 FBN2P35556 2912 aa13.43□□□□□ -0.26
SDF4-205ENST00000465727 JMJD1CQ15652 2540 aa13.43□□□□□ -0.26
SDF4-205ENST00000465727 NDUFC1O43677 76 aa13.43□□□□□ -0.26
SDF4-205ENST00000465727 ABCA12Q86UK0 2595 aa13.43□□□□□ -0.26
SDF4-205ENST00000465727 REG3AQ06141 175 aa13.43□□□□□ -0.26
SDF4-205ENST00000465727 DEFB113Q30KQ7 82 aa13.43□□□□□ -0.26
SDF4-205ENST00000465727 Q6ZQY7 126 aa13.42□□□□□ -0.26
SDF4-205ENST00000465727 POLQO75417 2590 aa13.41□□□□□ -0.26
SDF4-205ENST00000465727 M0R2N4 97 aa13.41□□□□□ -0.26
SDF4-205ENST00000465727 TRAV10A0A0B4J240 114 aa13.41□□□□□ -0.26
SDF4-205ENST00000465727 APCP25054 2843 aa13.4□□□□□ -0.26
SDF4-205ENST00000465727 A0A0J9YWU9 116 aa13.4□□□□□ -0.26
SDF4-205ENST00000465727 ANGP03950 147 aaKnown RBP13.4□□□□□ -0.26
SDF4-205ENST00000465727 IGHV4-30-4P0DP06 118 aa13.4□□□□□ -0.26
SDF4-205ENST00000465727 IGLV10-54A0A075B6I4 117 aa13.38□□□□□ -0.27
SDF4-205ENST00000465727 ATP5EP56381 51 aaPredicted RBP13.38□□□□□ -0.27
SDF4-205ENST00000465727 A0A096LPF7 62 aa13.38□□□□□ -0.27
SDF4-205ENST00000465727 TRBV7-4A0A0J9YYF1 115 aa13.38□□□□□ -0.27
SDF4-205ENST00000465727 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.38□□□□□ -0.27
SDF4-205ENST00000465727 Q8N3U1 123 aa13.38□□□□□ -0.27
SDF4-205ENST00000465727 LINC01006Q8NI28 216 aa13.38□□□□□ -0.27
SDF4-205ENST00000465727 SPAG11BQ08648 103 aa13.37□□□□□ -0.27
SDF4-205ENST00000465727 SMIM26A0A096LP01 95 aa13.36□□□□□ -0.27
SDF4-205ENST00000465727 SPATA3Q8NHX4 192 aa13.36□□□□□ -0.27
SDF4-205ENST00000465727 DIRC1Q969H9 104 aa13.36□□□□□ -0.27
SDF4-205ENST00000465727 F8WEM9 126 aa13.35□□□□□ -0.27
SDF4-205ENST00000465727 UNQ6190/PRO20217Q6UXQ8 127 aa13.35□□□□□ -0.27
SDF4-205ENST00000465727 RMI2Q96E14 147 aa13.35□□□□□ -0.27
SDF4-205ENST00000465727 C16orf95Q9H693 158 aa13.35□□□□□ -0.27
SDF4-205ENST00000465727 ESM1Q9NQ30 184 aa13.35□□□□□ -0.27
SDF4-205ENST00000465727 SNURFQ9Y675 71 aa13.35□□□□□ -0.27
SDF4-205ENST00000465727 GVQW2A0A096LPI5 108 aaPredicted RBP13.34□□□□□ -0.27
SDF4-205ENST00000465727 LYRM9A8MSI8 78 aa13.34□□□□□ -0.27
SDF4-205ENST00000465727 KRTAP10-9P60411 292 aa13.34□□□□□ -0.27
SDF4-205ENST00000465727 C10orf25Q5T742 122 aa13.34□□□□□ -0.27
SDF4-205ENST00000465727 X6R8D5 127 aa13.34□□□□□ -0.27
SDF4-205ENST00000465727 PDZD2O15018 2839 aa13.33□□□□□ -0.27
SDF4-205ENST00000465727 PRO0628Q9UI54 55 aa13.33□□□□□ -0.28
SDF4-205ENST00000465727 TRBV7-6A0A0J9YX20 115 aa13.32□□□□□ -0.28
SDF4-205ENST00000465727 ERC2-IT1O76042 136 aa13.32□□□□□ -0.28
SDF4-205ENST00000465727 NIPBLQ6KC79 2804 aaeCLIP13.29□□□□□ -0.285e-6■□□□□ 10
SDF4-205ENST00000465727 COX7BP24311 80 aa13.29□□□□□ -0.28
SDF4-205ENST00000465727 TM2D3Q9BRN9 247 aa13.29□□□□□ -0.28
SDF4-205ENST00000465727 ZNF73O43830 326 aaPredicted RBP13.28□□□□□ -0.28
SDF4-205ENST00000465727 MIFP14174 115 aa13.28□□□□□ -0.28
SDF4-205ENST00000465727 ELOF1P60002 83 aaKnown RBP13.28□□□□□ -0.28
SDF4-205ENST00000465727 KRTAP1-3Q8IUG1 177 aa13.28□□□□□ -0.28
SDF4-205ENST00000465727 NREPQ16612 68 aa13.27□□□□□ -0.28
SDF4-205ENST00000465727 NF1P21359 2839 aa13.26□□□□□ -0.29
SDF4-205ENST00000465727 FP248Q71RG6 208 aaPredicted RBP13.26□□□□□ -0.29
SDF4-205ENST00000465727 CUBNO60494 3623 aa13.26□□□□□ -0.29
SDF4-205ENST00000465727 LINC00336Q6ZUF6 198 aa13.25□□□□□ -0.29
SDF4-205ENST00000465727 PRR34Q9NV39 138 aa13.25□□□□□ -0.29
SDF4-205ENST00000465727 BPY2O14599 106 aa13.24□□□□□ -0.29
SDF4-205ENST00000465727 OTOGQ6ZRI0 2925 aa13.24□□□□□ -0.29
SDF4-205ENST00000465727 TMEM254Q8TBM7 123 aa13.24□□□□□ -0.29
SDF4-205ENST00000465727 LELP1Q5T871 98 aa13.23□□□□□ -0.29
SDF4-205ENST00000465727 SCXQ7RTU7 201 aa13.23□□□□□ -0.29
SDF4-205ENST00000465727 CCDC168Q8NDH2 2452 aa13.23□□□□□ -0.29
SDF4-205ENST00000465727 C6orf48Q9UBA6 75 aa13.22□□□□□ -0.29
SDF4-205ENST00000465727 SONP18583 2426 aaKnown RBP13.2□□□□□ -0.3
SDF4-205ENST00000465727 FN1P02751 2386 aaKnown RBP13.2□□□□□ -0.3
SDF4-205ENST00000465727 DAD1P61803 113 aa13.19□□□□□ -0.3
SDF4-205ENST00000465727 XAGE1AQ9HD64 81 aa13.19□□□□□ -0.3
SDF4-205ENST00000465727 CELA1Q9UNI1 258 aa13.17□□□□□ -0.3
SDF4-205ENST00000465727 VPREB1P12018 145 aa13.16□□□□□ -0.3
SDF4-205ENST00000465727 KLK12Q9UKR0 248 aa13.16□□□□□ -0.3
SDF4-205ENST00000465727 ITPR3Q14573 2671 aa13.16□□□□□ -0.3
SDF4-205ENST00000465727 M0R378 163 aa13.16□□□□□ -0.3
SDF4-205ENST00000465727 SETD2Q9BYW2 2564 aaPredicted RBP13.15□□□□□ -0.3
SDF4-205ENST00000465727 IGKV4-1P06312 121 aa13.15□□□□□ -0.3
SDF4-205ENST00000465727 LINC00528Q8N1L1 170 aa13.15□□□□□ -0.3
SDF4-205ENST00000465727 OCR1Q9BZK8 76 aa13.14□□□□□ -0.31
SDF4-205ENST00000465727 WFDC11Q8NEX6 87 aa13.13□□□□□ -0.31
SDF4-205ENST00000465727 A0A0U1RQV1 116 aa13.12□□□□□ -0.31
SDF4-205ENST00000465727 PRYO14603 147 aa13.12□□□□□ -0.31
SDF4-205ENST00000465727 ZNF469Q96JG9 3925 aaPredicted RBP13.12□□□□□ -0.31
SDF4-205ENST00000465727 EGFEM1PQ0D2K5 195 aa13.11□□□□□ -0.31
SDF4-205ENST00000465727 LINC00474Q9P2X8 69 aa13.11□□□□□ -0.31
SDF4-205ENST00000465727 DEFB4AO15263 64 aa13.11□□□□□ -0.31
SDF4-205ENST00000465727 DEFB135Q30KP9 77 aa13.11□□□□□ -0.31
SDF4-205ENST00000465727 APOC4P55056 127 aa13.09□□□□□ -0.31
SDF4-205ENST00000465727 HIGD2BQ4VC39 106 aa13.09□□□□□ -0.31
SDF4-205ENST00000465727 HIVEP1P15822 2718 aa13.09□□□□□ -0.31
SDF4-205ENST00000465727 F8P00451 2351 aa13.09□□□□□ -0.31
SDF4-205ENST00000465727 CAMK2N2Q96S95 79 aa13.09□□□□□ -0.31
SDF4-205ENST00000465727 TEP1Q99973 2627 aaKnown RBP13.09□□□□□ -0.31
SDF4-205ENST00000465727 Q8N9L7 120 aa13.07□□□□□ -0.32
SDF4-205ENST00000465727 NBEAL2Q6ZNJ1 2754 aa13.07□□□□□ -0.32
SDF4-205ENST00000465727 A0A1B0GW54 56 aa13.06□□□□□ -0.32
SDF4-205ENST00000465727 C1orf43Q9BWL3 253 aa13.06□□□□□ -0.32
SDF4-205ENST00000465727 SPART-AS1P0CW21 52 aa13.06□□□□□ -0.32
SDF4-205ENST00000465727 FUSP35637 526 aaKnown RBP eCLIP13.06□□□□□ -0.324e-7■■■■□ 20.8
SDF4-205ENST00000465727 Q8NAQ8 132 aa13.05□□□□□ -0.32
SDF4-205ENST00000465727 FLNAP21333 2647 aaKnown RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms