RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 J3QR89 54 aa1.82□□□□□ -2.12
VPS41-210ENST00000462429 COX7A2LO14548 114 aa1.82□□□□□ -2.12
VPS41-210ENST00000462429 FABP2P12104 132 aa1.82□□□□□ -2.12
VPS41-210ENST00000462429 FXYD7P58549 80 aa1.82□□□□□ -2.12
VPS41-210ENST00000462429 MRPS36P82909 103 aaKnown RBP1.82□□□□□ -2.12
VPS41-210ENST00000462429 KRTAP6-3Q3LI67 103 aa1.82□□□□□ -2.12
VPS41-210ENST00000462429 BVES-AS1Q5T3Y7 98 aa1.82□□□□□ -2.12
VPS41-210ENST00000462429 OR5A1Q8NGJ0 315 aa1.82□□□□□ -2.12
VPS41-210ENST00000462429 RPL39LQ96EH5 51 aaKnown RBP1.82□□□□□ -2.12
VPS41-210ENST00000462429 CST9LQ9H4G1 147 aa1.82□□□□□ -2.12
VPS41-210ENST00000462429 UBR5O95071 2799 aaPredicted RBP1.81□□□□□ -2.12
VPS41-210ENST00000462429 SMG1Q96Q15 3661 aaKnown RBP1.81□□□□□ -2.12
VPS41-210ENST00000462429 EPG5Q9HCE0 2579 aa1.81□□□□□ -2.12
VPS41-210ENST00000462429 SORL1Q92673 2214 aa1.81□□□□□ -2.12
VPS41-210ENST00000462429 ZNF815PA8K554 130 aa1.81□□□□□ -2.12
VPS41-210ENST00000462429 J3QQQ9 107 aa1.81□□□□□ -2.12
VPS41-210ENST00000462429 LEPROTO15243 131 aa1.81□□□□□ -2.12
VPS41-210ENST00000462429 COX6CP09669 75 aa1.81□□□□□ -2.12
VPS41-210ENST00000462429 SPART-AS1P0CW21 52 aa1.81□□□□□ -2.12
VPS41-210ENST00000462429 P0DMU3 169 aa1.81□□□□□ -2.12
VPS41-210ENST00000462429 FAM231AP0DMU4 169 aa1.81□□□□□ -2.12
VPS41-210ENST00000462429 FAM231CP0DMU5 169 aa1.81□□□□□ -2.12
VPS41-210ENST00000462429 MIFP14174 115 aa1.81□□□□□ -2.12
VPS41-210ENST00000462429 DEFB1P60022 68 aa1.81□□□□□ -2.12
VPS41-210ENST00000462429 C1orf158Q8N1D5 194 aa1.81□□□□□ -2.12
VPS41-210ENST00000462429 WFDC9Q8NEX5 89 aa1.81□□□□□ -2.12
VPS41-210ENST00000462429 NOP10Q9NPE3 64 aaKnown RBP1.81□□□□□ -2.12
VPS41-210ENST00000462429 DCHS2Q6V1P9 2916 aa1.8□□□□□ -2.12
VPS41-210ENST00000462429 FLNCQ14315 2725 aa1.8□□□□□ -2.12
VPS41-210ENST00000462429 CFAP46Q8IYW2 2715 aa1.8□□□□□ -2.12
VPS41-210ENST00000462429 UTP20O75691 2785 aaKnown RBP1.8□□□□□ -2.12
VPS41-210ENST00000462429 TRBV20-1A0A075B6N2 111 aa1.8□□□□□ -2.12
VPS41-210ENST00000462429 IGHV1-58A0A0C4DH39 117 aa1.8□□□□□ -2.12
VPS41-210ENST00000462429 F8W1H4 67 aa1.8□□□□□ -2.12
VPS41-210ENST00000462429 H3BPC8 53 aa1.8□□□□□ -2.12
VPS41-210ENST00000462429 K7ERU9 68 aa1.8□□□□□ -2.12
VPS41-210ENST00000462429 SNCGO76070 127 aa1.8□□□□□ -2.12
VPS41-210ENST00000462429 FGF6P10767 208 aa1.8□□□□□ -2.12
VPS41-210ENST00000462429 IFITM1P13164 125 aa1.8□□□□□ -2.12
VPS41-210ENST00000462429 FUSP35637 526 aaKnown RBP eCLIP1.8□□□□□ -2.12
VPS41-210ENST00000462429 RPL39P62891 51 aaKnown RBP1.8□□□□□ -2.12
VPS41-210ENST00000462429 C3orf56Q8N813 242 aa1.8□□□□□ -2.12
VPS41-210ENST00000462429 RAB37Q96AX2 223 aa1.8□□□□□ -2.12
VPS41-210ENST00000462429 AMELXQ99217 191 aa1.8□□□□□ -2.12
VPS41-210ENST00000462429 TP73-AS1Q9UF72 201 aa1.8□□□□□ -2.12
VPS41-210ENST00000462429 PRO0255Q9UI72 69 aa1.8□□□□□ -2.12
VPS41-210ENST00000462429 UBE2D4Q9Y2X8 147 aa1.8□□□□□ -2.12
VPS41-210ENST00000462429 MUC4Q99102 2169 aa1.8□□□□□ -2.12
VPS41-210ENST00000462429 ZFYVE26Q68DK2 2539 aa1.79□□□□□ -2.12
VPS41-210ENST00000462429 TEX15Q9BXT5 2789 aa1.79□□□□□ -2.12
VPS41-210ENST00000462429 TRBV6-8A0A0A6YYG3 113 aa1.79□□□□□ -2.12
VPS41-210ENST00000462429 A0A1W2PPM0 123 aa1.79□□□□□ -2.12
VPS41-210ENST00000462429 H3BUT2 72 aa1.79□□□□□ -2.12
VPS41-210ENST00000462429 TAX1BP3O14907 124 aa1.79□□□□□ -2.12
VPS41-210ENST00000462429 TIMM17BO60830 172 aa1.79□□□□□ -2.12
VPS41-210ENST00000462429 APOMO95445 188 aa1.79□□□□□ -2.12
VPS41-210ENST00000462429 UBE2D3P61077 147 aa1.79□□□□□ -2.12
VPS41-210ENST00000462429 UBE2D2P62837 147 aa1.79□□□□□ -2.12
VPS41-210ENST00000462429 SS18Q15532 418 aa1.79□□□□□ -2.12
VPS41-210ENST00000462429 C12orf74Q32Q52 190 aa1.79□□□□□ -2.12
VPS41-210ENST00000462429 Q6ZTI0 123 aa1.79□□□□□ -2.12
VPS41-210ENST00000462429 ATP6V0E2Q8NHE4 81 aa1.79□□□□□ -2.12
VPS41-210ENST00000462429 SMR3AQ99954 134 aa1.79□□□□□ -2.12
VPS41-210ENST00000462429 NHP2Q9NX24 153 aaKnown RBP1.79□□□□□ -2.12
VPS41-210ENST00000462429 NDUFA12Q9UI09 145 aa1.79□□□□□ -2.12
VPS41-210ENST00000462429 WNK1Q9H4A3 2382 aa1.79□□□□□ -2.12
VPS41-210ENST00000462429 CCDC168Q8NDH2 2452 aa1.79□□□□□ -2.12
VPS41-210ENST00000462429 MYO9AB2RTY4 2548 aa1.79□□□□□ -2.12
VPS41-210ENST00000462429 ABCA12Q86UK0 2595 aa1.79□□□□□ -2.12
VPS41-210ENST00000462429 CRYBG3Q68DQ2 2970 aa1.79□□□□□ -2.12
VPS41-210ENST00000462429 ASH1LQ9NR48 2969 aaKnown RBP1.78□□□□□ -2.12
VPS41-210ENST00000462429 POLQO75417 2590 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.78□□□□□ -2.12
VPS41-210ENST00000462429 IGKV2D-26A0A0A0MRZ7 120 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 TRAV13-1A0A0B4J241 112 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 A0A0J9YY99 117 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 IGKV2-29A2NJV5 120 aaPredicted RBP1.78□□□□□ -2.12
VPS41-210ENST00000462429 TMEM262E9PQX1 116 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 H3BNG1 76 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 K7EP34 96 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 DEFB130BP0DP73 79 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 DEFB130AP0DP74 79 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 XCL1P47992 114 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 UBE2D1P51668 147 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 EMP1P54849 157 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 TCTAP57738 103 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 MEIG1Q5JSS6 88 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 C10orf126Q8N4M7 172 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 SPANXDQ9BXN6 97 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 CDC42SE2Q9NRR3 84 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 SPANXCQ9NY87 97 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 PRO1854Q9UHT4 67 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 ERG28Q9UKR5 140 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 SPCS1Q9Y6A9 102 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 APCP25054 2843 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 ITPR3Q14573 2671 aa1.78□□□□□ -2.12
VPS41-210ENST00000462429 CELSR2Q9HCU4 2923 aa1.77□□□□□ -2.13
VPS41-210ENST00000462429 TLN2Q9Y4G6 2542 aa1.77□□□□□ -2.13
VPS41-210ENST00000462429 SONP18583 2426 aaKnown RBP1.77□□□□□ -2.13
VPS41-210ENST00000462429 TRAV13-2A0A0B4J235 113 aa1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms