RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 A0A0J9YWU9 116 aa8.07□□□□□ -1.12
NPHP4-204ENST00000460696 KRTAP10-3P60369 221 aa8.07□□□□□ -1.12
NPHP4-204ENST00000460696 SMIM20Q8N5G0 67 aa8.07□□□□□ -1.12
NPHP4-204ENST00000460696 FAM218AQ96MZ4 157 aa8.07□□□□□ -1.12
NPHP4-204ENST00000460696 CITED1Q99966 193 aa8.07□□□□□ -1.12
NPHP4-204ENST00000460696 SVEP1Q4LDE5 3571 aa8.06□□□□□ -1.12
NPHP4-204ENST00000460696 F8WEM9 126 aa8.06□□□□□ -1.12
NPHP4-204ENST00000460696 UBE2BP63146 152 aa8.06□□□□□ -1.12
NPHP4-204ENST00000460696 ATOX1O00244 68 aa8.06□□□□□ -1.12
NPHP4-204ENST00000460696 PLAC8L1A1L4L8 177 aa8.05□□□□□ -1.12
NPHP4-204ENST00000460696 CCDC179H3BU77 68 aa8.05□□□□□ -1.12
NPHP4-204ENST00000460696 TRAV23DV6A0A075B6W5 121 aa8.05□□□□□ -1.12
NPHP4-204ENST00000460696 COX17Q14061 63 aa8.05□□□□□ -1.12
NPHP4-204ENST00000460696 FAM240AA0A1B0GVK7 77 aa8.05□□□□□ -1.12
NPHP4-204ENST00000460696 WFDC10BQ8IUB3 73 aa8.05□□□□□ -1.12
NPHP4-204ENST00000460696 SPATA3Q8NHX4 192 aa8.04□□□□□ -1.12
NPHP4-204ENST00000460696 IGKV2-28A0A075B6P5 120 aa8.03□□□□□ -1.12
NPHP4-204ENST00000460696 M0QXV9 152 aa8.03□□□□□ -1.12
NPHP4-204ENST00000460696 IGKV2D-28P01615 120 aa8.03□□□□□ -1.12
NPHP4-204ENST00000460696 SYCNQ0VAF6 134 aa8.03□□□□□ -1.12
NPHP4-204ENST00000460696 IL17DQ8TAD2 202 aa8.03□□□□□ -1.12
NPHP4-204ENST00000460696 KLK5Q9Y337 293 aaPredicted RBP8.03□□□□□ -1.12
NPHP4-204ENST00000460696 LYPD5Q6UWN5 251 aa8.03□□□□□ -1.12
NPHP4-204ENST00000460696 FAM104AQ969W3 186 aa8.03□□□□□ -1.12
NPHP4-204ENST00000460696 IGKV2-24A0A0C4DH68 120 aa8.02□□□□□ -1.13
NPHP4-204ENST00000460696 Q8N814 137 aa8.02□□□□□ -1.13
NPHP4-204ENST00000460696 TRBV10-3A0A0K0K1G6 114 aa8.02□□□□□ -1.13
NPHP4-204ENST00000460696 ENHOQ6UWT2 76 aa8.02□□□□□ -1.13
NPHP4-204ENST00000460696 SCXQ7RTU7 201 aa8.02□□□□□ -1.13
NPHP4-204ENST00000460696 WFDC9Q8NEX5 89 aa8.01□□□□□ -1.13
NPHP4-204ENST00000460696 C10orf25Q5T742 122 aa8□□□□□ -1.13
NPHP4-204ENST00000460696 A0A087WVE0 104 aa8□□□□□ -1.13
NPHP4-204ENST00000460696 NREPQ16612 68 aa8□□□□□ -1.13
NPHP4-204ENST00000460696 ZNF73O43830 326 aaPredicted RBP7.99□□□□□ -1.13
NPHP4-204ENST00000460696 IMUPQ9GZP8 106 aa7.99□□□□□ -1.13
NPHP4-204ENST00000460696 PDZD2O15018 2839 aa7.99□□□□□ -1.13
NPHP4-204ENST00000460696 Q6Q795 121 aa7.99□□□□□ -1.13
NPHP4-204ENST00000460696 UPK3BQ9BT76 320 aa7.99□□□□□ -1.13
NPHP4-204ENST00000460696 FBN1P35555 2871 aaKnown RBP7.98□□□□□ -1.13
NPHP4-204ENST00000460696 FUSP35637 526 aaKnown RBP eCLIP7.98□□□□□ -1.13
NPHP4-204ENST00000460696 Q8NAQ8 132 aa7.97□□□□□ -1.13
NPHP4-204ENST00000460696 LINC00846Q9NV44 126 aa7.97□□□□□ -1.13
NPHP4-204ENST00000460696 RPL37AP8A6NKH3 93 aa7.97□□□□□ -1.13
NPHP4-204ENST00000460696 FAM19A5Q7Z5A7 132 aaPredicted RBP7.97□□□□□ -1.13
NPHP4-204ENST00000460696 UQCRQO14949 82 aa7.96□□□□□ -1.13
NPHP4-204ENST00000460696 NDUFC2O95298 119 aa7.96□□□□□ -1.13
NPHP4-204ENST00000460696 TRAV10A0A0B4J240 114 aa7.96□□□□□ -1.13
NPHP4-204ENST00000460696 M0R378 163 aa7.96□□□□□ -1.13
NPHP4-204ENST00000460696 USP17L23D6RBM5 183 aa7.96□□□□□ -1.14
NPHP4-204ENST00000460696 PDE6GP18545 87 aa7.96□□□□□ -1.14
NPHP4-204ENST00000460696 PKD1L1Q8TDX9 2849 aa7.96□□□□□ -1.14
NPHP4-204ENST00000460696 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.95□□□□□ -1.14
NPHP4-204ENST00000460696 SPENQ96T58 3664 aaKnown RBP7.95□□□□□ -1.14
NPHP4-204ENST00000460696 H3BQ85 93 aa7.95□□□□□ -1.14
NPHP4-204ENST00000460696 CCKP06307 115 aa7.95□□□□□ -1.14
NPHP4-204ENST00000460696 EGFEM1PQ0D2K5 195 aa7.95□□□□□ -1.14
NPHP4-204ENST00000460696 Q6ZRU5 148 aa7.95□□□□□ -1.14
NPHP4-204ENST00000460696 FAM19A3Q7Z5A8 133 aa7.95□□□□□ -1.14
NPHP4-204ENST00000460696 C20orf197Q8N268 126 aa7.95□□□□□ -1.14
NPHP4-204ENST00000460696 LINC01561Q8N1V8 128 aa7.94□□□□□ -1.14
NPHP4-204ENST00000460696 C3orf22Q8N5N4 141 aa7.94□□□□□ -1.14
NPHP4-204ENST00000460696 HIGD2AQ9BW72 106 aa7.94□□□□□ -1.14
NPHP4-204ENST00000460696 C3orf84H3BNL1 204 aa7.94□□□□□ -1.14
NPHP4-204ENST00000460696 K7EIL1 84 aa7.94□□□□□ -1.14
NPHP4-204ENST00000460696 KRTAP10-11P60412 298 aa7.93□□□□□ -1.14
NPHP4-204ENST00000460696 ESRGQ1W209 222 aa7.93□□□□□ -1.14
NPHP4-204ENST00000460696 LINC00575Q6W349 94 aa7.92□□□□□ -1.14
NPHP4-204ENST00000460696 MUC7Q8TAX7 377 aa7.92□□□□□ -1.14
NPHP4-204ENST00000460696 C6orf48Q9UBA6 75 aa7.92□□□□□ -1.14
NPHP4-204ENST00000460696 Q6JHZ5 121 aa7.91□□□□□ -1.14
NPHP4-204ENST00000460696 NDUFC2-KCTD14E9PQ53 114 aa7.91□□□□□ -1.14
NPHP4-204ENST00000460696 CUBNO60494 3623 aa7.9□□□□□ -1.14
NPHP4-204ENST00000460696 BPY2O14599 106 aa7.9□□□□□ -1.15
NPHP4-204ENST00000460696 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.9□□□□□ -1.15
NPHP4-204ENST00000460696 COX7CP15954 63 aa7.89□□□□□ -1.15
NPHP4-204ENST00000460696 ATP5EP2Q5VTU8 51 aa7.89□□□□□ -1.15
NPHP4-204ENST00000460696 TENM1Q9UKZ4 2725 aa7.89□□□□□ -1.15
NPHP4-204ENST00000460696 A0A096LNI7 61 aa7.89□□□□□ -1.15
NPHP4-204ENST00000460696 TRBV7-7A0A0K0K1E9 115 aa7.89□□□□□ -1.15
NPHP4-204ENST00000460696 FAM19A1Q7Z5A9 133 aa7.89□□□□□ -1.15
NPHP4-204ENST00000460696 SERP2Q8N6R1 65 aa7.88□□□□□ -1.15
NPHP4-204ENST00000460696 LINC00612Q8N6U2 182 aa7.88□□□□□ -1.15
NPHP4-204ENST00000460696 KIAA0087Q14695 138 aa7.88□□□□□ -1.15
NPHP4-204ENST00000460696 TGP01266 2768 aa7.87□□□□□ -1.15
NPHP4-204ENST00000460696 SMCR5Q8TEV8 140 aa7.86□□□□□ -1.15
NPHP4-204ENST00000460696 UBE2AP49459 152 aa7.86□□□□□ -1.15
NPHP4-204ENST00000460696 C2orf48Q96LS8 159 aa7.84□□□□□ -1.15
NPHP4-204ENST00000460696 C9orf129Q5T035 196 aaKnown RBP7.84□□□□□ -1.15
NPHP4-204ENST00000460696 J3KT08 172 aa7.83□□□□□ -1.16
NPHP4-204ENST00000460696 LINC01556Q5JQF7 62 aa7.82□□□□□ -1.16
NPHP4-204ENST00000460696 PPDPFQ9H3Y8 114 aa7.82□□□□□ -1.16
NPHP4-204ENST00000460696 SNURFQ9Y675 71 aa7.82□□□□□ -1.16
NPHP4-204ENST00000460696 Q6ZVQ6 151 aa7.81□□□□□ -1.16
NPHP4-204ENST00000460696 LOC107984640A0A0U1RRK4 108 aa7.81□□□□□ -1.16
NPHP4-204ENST00000460696 DHRS4-AS1Q9P1J3 65 aa7.81□□□□□ -1.16
NPHP4-204ENST00000460696 NHLRC4P0CG21 123 aaPredicted RBP7.81□□□□□ -1.16
NPHP4-204ENST00000460696 BSNQ9UPA5 3926 aa7.81□□□□□ -1.16
NPHP4-204ENST00000460696 CDK2AP2O75956 126 aa7.8□□□□□ -1.16
NPHP4-204ENST00000460696 WWC2-AS2Q96NR7 200 aa7.79□□□□□ -1.16
NPHP4-204ENST00000460696 B9D2Q9BPU9 175 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms