RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 J3QLI3 93 aa7.98□□□□□ -1.13
CPSF3-202ENST00000460593 DEFB4AO15263 64 aa7.98□□□□□ -1.13
CPSF3-202ENST00000460593 ZNF561-AS1K7EIQ3 104 aa7.97□□□□□ -1.13
CPSF3-202ENST00000460593 BBC3Q96PG8 261 aaPredicted RBP7.97□□□□□ -1.13
CPSF3-202ENST00000460593 IGHV4-31P0DP07 118 aa7.97□□□□□ -1.13
CPSF3-202ENST00000460593 FAM229BQ4G0N7 80 aa7.97□□□□□ -1.13
CPSF3-202ENST00000460593 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.97□□□□□ -1.13
CPSF3-202ENST00000460593 MPLKIPQ8TAP9 179 aa7.97□□□□□ -1.13
CPSF3-202ENST00000460593 CHCHD10Q8WYQ3 142 aaPredicted RBP7.97□□□□□ -1.13
CPSF3-202ENST00000460593 EPM2AB3EWF7 344 aa7.96□□□□□ -1.13
CPSF3-202ENST00000460593 KLKP1Q107X0 134 aa7.96□□□□□ -1.13
CPSF3-202ENST00000460593 TRBV7-6A0A0J9YX20 115 aa7.96□□□□□ -1.14
CPSF3-202ENST00000460593 ANGP03950 147 aaKnown RBP7.96□□□□□ -1.14
CPSF3-202ENST00000460593 CSNK1G2-AS1Q8NCQ2 148 aa7.96□□□□□ -1.14
CPSF3-202ENST00000460593 XAGE1AQ9HD64 81 aa7.96□□□□□ -1.14
CPSF3-202ENST00000460593 PRO0628Q9UI54 55 aa7.96□□□□□ -1.14
CPSF3-202ENST00000460593 ZNF462Q96JM2 2506 aa7.96□□□□□ -1.14
CPSF3-202ENST00000460593 ITPR3Q14573 2671 aa7.95□□□□□ -1.14
CPSF3-202ENST00000460593 MRAPQ8TCY5 172 aa7.95□□□□□ -1.14
CPSF3-202ENST00000460593 BRK1Q8WUW1 75 aa7.95□□□□□ -1.14
CPSF3-202ENST00000460593 FSHBP01225 129 aa7.94□□□□□ -1.14
CPSF3-202ENST00000460593 KRTAP10-9P60411 292 aa7.94□□□□□ -1.14
CPSF3-202ENST00000460593 FLNAP21333 2647 aaKnown RBP7.94□□□□□ -1.14
CPSF3-202ENST00000460593 MUC7Q8TAX7 377 aa7.94□□□□□ -1.14
CPSF3-202ENST00000460593 LOC110117498A0A087WWA1 95 aa7.93□□□□□ -1.14
CPSF3-202ENST00000460593 DAD1P61803 113 aa7.93□□□□□ -1.14
CPSF3-202ENST00000460593 C19orf73Q9NVV2 129 aa7.93□□□□□ -1.14
CPSF3-202ENST00000460593 HIVEP2P31629 2446 aa7.92□□□□□ -1.14
CPSF3-202ENST00000460593 SMIM26A0A096LP01 95 aa7.92□□□□□ -1.14
CPSF3-202ENST00000460593 MIFP14174 115 aa7.92□□□□□ -1.14
CPSF3-202ENST00000460593 REG3AQ06141 175 aa7.92□□□□□ -1.14
CPSF3-202ENST00000460593 CD164L2Q6UWJ8 174 aa7.92□□□□□ -1.14
CPSF3-202ENST00000460593 TRBV7-4A0A0J9YYF1 115 aa7.91□□□□□ -1.14
CPSF3-202ENST00000460593 NREPQ16612 68 aa7.91□□□□□ -1.14
CPSF3-202ENST00000460593 VWFP04275 2813 aa7.91□□□□□ -1.14
CPSF3-202ENST00000460593 BPY2O14599 106 aa7.91□□□□□ -1.14
CPSF3-202ENST00000460593 CYSRT1A8MQ03 144 aa7.9□□□□□ -1.14
CPSF3-202ENST00000460593 DSCR9P59020 149 aa7.9□□□□□ -1.14
CPSF3-202ENST00000460593 SPAG11BQ08648 103 aa7.9□□□□□ -1.14
CPSF3-202ENST00000460593 A0A1B0GUV1 79 aa7.89□□□□□ -1.15
CPSF3-202ENST00000460593 TMEM254Q8TBM7 123 aa7.89□□□□□ -1.15
CPSF3-202ENST00000460593 LRCOL1A6NCL2 159 aa7.88□□□□□ -1.15
CPSF3-202ENST00000460593 COX17Q14061 63 aa7.88□□□□□ -1.15
CPSF3-202ENST00000460593 DNAJC9-AS1A6NH13 148 aa7.87□□□□□ -1.15
CPSF3-202ENST00000460593 CXCL6P80162 114 aa7.87□□□□□ -1.15
CPSF3-202ENST00000460593 C3orf84H3BNL1 204 aa7.87□□□□□ -1.15
CPSF3-202ENST00000460593 IGLV6-57P01721 117 aa7.87□□□□□ -1.15
CPSF3-202ENST00000460593 IGHV4-28A0A0C4DH34 117 aa7.86□□□□□ -1.15
CPSF3-202ENST00000460593 HTN3P15516 51 aa7.86□□□□□ -1.15
CPSF3-202ENST00000460593 UNC79Q9P2D8 2635 aa7.86□□□□□ -1.15
CPSF3-202ENST00000460593 HIGD2AQ9BW72 106 aa7.85□□□□□ -1.15
CPSF3-202ENST00000460593 PRO0255Q9UI72 69 aa7.85□□□□□ -1.15
CPSF3-202ENST00000460593 DIRC1Q969H9 104 aa7.85□□□□□ -1.15
CPSF3-202ENST00000460593 CELA1Q9UNI1 258 aa7.85□□□□□ -1.15
CPSF3-202ENST00000460593 C9orf66Q5T8R8 295 aa7.85□□□□□ -1.15
CPSF3-202ENST00000460593 KLK12Q9UKR0 248 aa7.85□□□□□ -1.15
CPSF3-202ENST00000460593 ZNF73O43830 326 aaPredicted RBP7.84□□□□□ -1.15
CPSF3-202ENST00000460593 IGLV1-51P01701 117 aa7.84□□□□□ -1.15
CPSF3-202ENST00000460593 BCE1O60756 84 aa7.83□□□□□ -1.16
CPSF3-202ENST00000460593 HIGD2BQ4VC39 106 aa7.83□□□□□ -1.16
CPSF3-202ENST00000460593 COX7BP24311 80 aa7.83□□□□□ -1.16
CPSF3-202ENST00000460593 C6orf48Q9UBA6 75 aa7.83□□□□□ -1.16
CPSF3-202ENST00000460593 PRB2P02812 416 aaPredicted RBP7.83□□□□□ -1.16
CPSF3-202ENST00000460593 F8P00451 2351 aa7.83□□□□□ -1.16
CPSF3-202ENST00000460593 DEFB105AQ8NG35 78 aa7.82□□□□□ -1.16
CPSF3-202ENST00000460593 X6R8D5 127 aa7.82□□□□□ -1.16
CPSF3-202ENST00000460593 IGKV4-1P06312 121 aa7.82□□□□□ -1.16
CPSF3-202ENST00000460593 FAM30AQ9NZY2 134 aa7.81□□□□□ -1.16
CPSF3-202ENST00000460593 PRYO14603 147 aa7.81□□□□□ -1.16
CPSF3-202ENST00000460593 DEFB135Q30KP9 77 aa7.8□□□□□ -1.16
CPSF3-202ENST00000460593 FUSP35637 526 aaKnown RBP eCLIP7.8□□□□□ -1.16
CPSF3-202ENST00000460593 LINC00612Q8N6U2 182 aa7.8□□□□□ -1.16
CPSF3-202ENST00000460593 PDE6GP18545 87 aa7.79□□□□□ -1.16
CPSF3-202ENST00000460593 NDUFC1O43677 76 aa7.79□□□□□ -1.16
CPSF3-202ENST00000460593 PKD1L1Q8TDX9 2849 aa7.79□□□□□ -1.16
CPSF3-202ENST00000460593 PRR4Q16378 134 aa7.78□□□□□ -1.16
CPSF3-202ENST00000460593 OCR1Q9BZK8 76 aa7.78□□□□□ -1.16
CPSF3-202ENST00000460593 ELOF1P60002 83 aaKnown RBP7.78□□□□□ -1.16
CPSF3-202ENST00000460593 C1orf195Q5TG92 126 aa7.78□□□□□ -1.16
CPSF3-202ENST00000460593 A0A0J9YWU9 116 aa7.77□□□□□ -1.16
CPSF3-202ENST00000460593 IGHV4-30-4P0DP06 118 aa7.77□□□□□ -1.16
CPSF3-202ENST00000460593 Q6ZTC4 211 aa7.77□□□□□ -1.17
CPSF3-202ENST00000460593 SMIM29Q86T20 159 aa7.77□□□□□ -1.17
CPSF3-202ENST00000460593 ESRGQ1W209 222 aa7.76□□□□□ -1.17
CPSF3-202ENST00000460593 CMC4P56277 68 aaPredicted RBP7.75□□□□□ -1.17
CPSF3-202ENST00000460593 HIVEP1P15822 2718 aa7.75□□□□□ -1.17
CPSF3-202ENST00000460593 DEFB113Q30KQ7 82 aa7.75□□□□□ -1.17
CPSF3-202ENST00000460593 USP24Q9UPU5 2620 aa7.75□□□□□ -1.17
CPSF3-202ENST00000460593 VPREB1P12018 145 aa7.74□□□□□ -1.17
CPSF3-202ENST00000460593 CAMK2N2Q96S95 79 aa7.73□□□□□ -1.17
CPSF3-202ENST00000460593 ATP5EP56381 51 aaPredicted RBP7.73□□□□□ -1.17
CPSF3-202ENST00000460593 Q6ZRU5 148 aa7.72□□□□□ -1.17
CPSF3-202ENST00000460593 LINC00528Q8N1L1 170 aa7.72□□□□□ -1.17
CPSF3-202ENST00000460593 KRTAP1-3Q8IUG1 177 aa7.72□□□□□ -1.17
CPSF3-202ENST00000460593 TRRAPQ9Y4A5 3859 aa7.72□□□□□ -1.17
CPSF3-202ENST00000460593 ANK3Q12955 4377 aaKnown RBP7.71□□□□□ -1.17
CPSF3-202ENST00000460593 PSPHP1O15172 72 aa7.71□□□□□ -1.17
CPSF3-202ENST00000460593 PDZD2O15018 2839 aa7.71□□□□□ -1.17
CPSF3-202ENST00000460593 TENM1Q9UKZ4 2725 aa7.71□□□□□ -1.18
CPSF3-202ENST00000460593 TEP1Q99973 2627 aaKnown RBP7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms