RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 TRBV6-8A0A0A6YYG3 113 aa2.42□□□□□ -2.02
VPS29-202ENST00000447578 TRBV10-2A0A0K0K1G8 114 aa2.42□□□□□ -2.02
VPS29-202ENST00000447578 TMEM262E9PQX1 116 aa2.42□□□□□ -2.02
VPS29-202ENST00000447578 COX6CP09669 75 aa2.42□□□□□ -2.02
VPS29-202ENST00000447578 SOSTDC1Q6X4U4 206 aa2.42□□□□□ -2.02
VPS29-202ENST00000447578 LINC00308Q8TCZ7 52 aa2.42□□□□□ -2.02
VPS29-202ENST00000447578 COX7B2Q8TF08 81 aa2.42□□□□□ -2.02
VPS29-202ENST00000447578 COPS9Q8WXC6 57 aa2.42□□□□□ -2.02
VPS29-202ENST00000447578 CLEC2BQ92478 149 aa2.42□□□□□ -2.02
VPS29-202ENST00000447578 TOMM7Q9P0U1 55 aa2.42□□□□□ -2.02
VPS29-202ENST00000447578 SPTA1P02549 2419 aa2.42□□□□□ -2.02
VPS29-202ENST00000447578 SMG1Q96Q15 3661 aaKnown RBP2.41□□□□□ -2.02
VPS29-202ENST00000447578 ATMQ13315 3056 aa2.41□□□□□ -2.02
VPS29-202ENST00000447578 ZZEF1O43149 2961 aa2.41□□□□□ -2.02
VPS29-202ENST00000447578 A0A096LPF7 62 aa2.41□□□□□ -2.02
VPS29-202ENST00000447578 SMIM9A6NGZ8 99 aa2.41□□□□□ -2.02
VPS29-202ENST00000447578 SCGB1A1P11684 91 aa2.41□□□□□ -2.02
VPS29-202ENST00000447578 LINC00158P58513 81 aa2.41□□□□□ -2.02
VPS29-202ENST00000447578 CLPSL2Q6UWE3 100 aa2.41□□□□□ -2.02
VPS29-202ENST00000447578 C2orf82Q6UX34 121 aa2.41□□□□□ -2.02
VPS29-202ENST00000447578 C5orf38Q86SI9 138 aa2.41□□□□□ -2.02
VPS29-202ENST00000447578 NCOR2Q9Y618 2525 aa2.41□□□□□ -2.02
VPS29-202ENST00000447578 HRNRQ86YZ3 2850 aaPredicted RBP2.41□□□□□ -2.02
VPS29-202ENST00000447578 DMXL2Q8TDJ6 3036 aa2.41□□□□□ -2.02
VPS29-202ENST00000447578 LINC00959A0A1B0GUT2 108 aa2.4□□□□□ -2.03
VPS29-202ENST00000447578 C16orf90A8MZG2 172 aa2.4□□□□□ -2.03
VPS29-202ENST00000447578 H3BT86 120 aa2.4□□□□□ -2.03
VPS29-202ENST00000447578 LST1O00453 97 aa2.4□□□□□ -2.03
VPS29-202ENST00000447578 COX7A2LO14548 114 aa2.4□□□□□ -2.03
VPS29-202ENST00000447578 DEFB4AO15263 64 aa2.4□□□□□ -2.03
VPS29-202ENST00000447578 MT-ATP8P03928 68 aa2.4□□□□□ -2.03
VPS29-202ENST00000447578 XCL1P47992 114 aa2.4□□□□□ -2.03
VPS29-202ENST00000447578 DAD1P61803 113 aa2.4□□□□□ -2.03
VPS29-202ENST00000447578 SS18Q15532 418 aa2.4□□□□□ -2.03
VPS29-202ENST00000447578 DEFB135Q30KP9 77 aa2.4□□□□□ -2.03
VPS29-202ENST00000447578 UBE2WQ96B02 151 aa2.4□□□□□ -2.03
VPS29-202ENST00000447578 C11orf68Q9H3H3 251 aaKnown RBP2.4□□□□□ -2.03
VPS29-202ENST00000447578 PRO0255Q9UI72 69 aa2.4□□□□□ -2.03
VPS29-202ENST00000447578 NBASA2RRP1 2371 aa2.4□□□□□ -2.03
VPS29-202ENST00000447578 RELNP78509 3460 aa2.4□□□□□ -2.03
VPS29-202ENST00000447578 ADGRG4Q8IZF6 3080 aa2.4□□□□□ -2.03
VPS29-202ENST00000447578 CACNA1BQ00975 2339 aa2.4□□□□□ -2.03
VPS29-202ENST00000447578 AKAP6Q13023 2319 aa2.4□□□□□ -2.03
VPS29-202ENST00000447578 LAMA5O15230 3695 aa2.39□□□□□ -2.03
VPS29-202ENST00000447578 TRAV13-2A0A0B4J235 113 aa2.39□□□□□ -2.03
VPS29-202ENST00000447578 TEX49A0A1B0GTD5 131 aa2.39□□□□□ -2.03
VPS29-202ENST00000447578 IBA57-AS1B1ANH7 110 aa2.39□□□□□ -2.03
VPS29-202ENST00000447578 CRPP02741 224 aa2.39□□□□□ -2.03
VPS29-202ENST00000447578 ATP5G1P05496 136 aa2.39□□□□□ -2.03
VPS29-202ENST00000447578 HTN3P15516 51 aa2.39□□□□□ -2.03
VPS29-202ENST00000447578 LINC01600Q96MT4 127 aa2.39□□□□□ -2.03
VPS29-202ENST00000447578 SPTBN1Q01082 2364 aaKnown RBP2.39□□□□□ -2.03
VPS29-202ENST00000447578 NBEAQ8NFP9 2946 aa2.38□□□□□ -2.03
VPS29-202ENST00000447578 A8MUU9 505 aa2.38□□□□□ -2.03
VPS29-202ENST00000447578 A8MWP4 228 aa2.38□□□□□ -2.03
VPS29-202ENST00000447578 ANGP03950 147 aaKnown RBP2.38□□□□□ -2.03
VPS29-202ENST00000447578 SPART-AS1P0CW21 52 aa2.38□□□□□ -2.03
VPS29-202ENST00000447578 MIFP14174 115 aa2.38□□□□□ -2.03
VPS29-202ENST00000447578 CCL18P55774 89 aa2.38□□□□□ -2.03
VPS29-202ENST00000447578 MOBPQ13875 183 aa2.38□□□□□ -2.03
VPS29-202ENST00000447578 DOPEY1Q5JWR5 2465 aa2.38□□□□□ -2.03
VPS29-202ENST00000447578 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.38□□□□□ -2.032e-11■■■■■ 31.7
VPS29-202ENST00000447578 Q6ZRU5 148 aa2.38□□□□□ -2.03
VPS29-202ENST00000447578 LINC00269Q8N2A0 174 aa2.38□□□□□ -2.03
VPS29-202ENST00000447578 OR13C6PQ8NH95 151 aa2.38□□□□□ -2.03
VPS29-202ENST00000447578 CEP295Q9C0D2 2601 aa2.38□□□□□ -2.03
VPS29-202ENST00000447578 PKD1L2Q7Z442 2459 aa2.37□□□□□ -2.03
VPS29-202ENST00000447578 IGLV10-54A0A075B6I4 117 aa2.37□□□□□ -2.03
VPS29-202ENST00000447578 A0A1B0GV72 72 aa2.37□□□□□ -2.03
VPS29-202ENST00000447578 LRCOL1A6NCL2 159 aa2.37□□□□□ -2.03
VPS29-202ENST00000447578 SNCGO76070 127 aa2.37□□□□□ -2.03
VPS29-202ENST00000447578 TRACP01848 142 aa2.37□□□□□ -2.03
VPS29-202ENST00000447578 BAALC-AS2P0C853 105 aa2.37□□□□□ -2.03
VPS29-202ENST00000447578 RPL28P46779 137 aaKnown RBP2.37□□□□□ -2.03
VPS29-202ENST00000447578 CKS1BP61024 79 aa2.37□□□□□ -2.03
VPS29-202ENST00000447578 Q8IZM0 81 aa2.37□□□□□ -2.03
VPS29-202ENST00000447578 C15orf53Q8NAA6 179 aa2.37□□□□□ -2.03
VPS29-202ENST00000447578 Q8NAQ8 132 aa2.37□□□□□ -2.03
VPS29-202ENST00000447578 SMIM11BQ8TCY0 68 aa2.37□□□□□ -2.03
VPS29-202ENST00000447578 DOPEY2Q9Y3R5 2298 aa2.37□□□□□ -2.03
VPS29-202ENST00000447578 CSMD1Q96PZ7 3565 aa2.36□□□□□ -2.03
VPS29-202ENST00000447578 A6NED7 52 aa2.36□□□□□ -2.03
VPS29-202ENST00000447578 DNAL4O96015 105 aa2.36□□□□□ -2.03
VPS29-202ENST00000447578 DEFB121Q5J5C9 76 aa2.36□□□□□ -2.03
VPS29-202ENST00000447578 KPRPQ5T749 579 aaPredicted RBP2.36□□□□□ -2.03
VPS29-202ENST00000447578 LELP1Q5T871 98 aa2.36□□□□□ -2.03
VPS29-202ENST00000447578 C1orf195Q5TG92 126 aa2.36□□□□□ -2.03
VPS29-202ENST00000447578 SPINT4Q6UDR6 99 aa2.36□□□□□ -2.03
VPS29-202ENST00000447578 C3orf22Q8N5N4 141 aa2.36□□□□□ -2.03
VPS29-202ENST00000447578 WFDC9Q8NEX5 89 aa2.36□□□□□ -2.03
VPS29-202ENST00000447578 RMI2Q96E14 147 aa2.36□□□□□ -2.03
VPS29-202ENST00000447578 B9D2Q9BPU9 175 aa2.36□□□□□ -2.03
VPS29-202ENST00000447578 KALRNO60229 2985 aa2.36□□□□□ -2.03
VPS29-202ENST00000447578 PRRC2CQ9Y520 2896 aaKnown RBP2.35□□□□□ -2.03
VPS29-202ENST00000447578 DCHS2Q6V1P9 2916 aa2.35□□□□□ -2.03
VPS29-202ENST00000447578 H0YGX0 51 aa2.35□□□□□ -2.03
VPS29-202ENST00000447578 H3BQ85 93 aa2.35□□□□□ -2.03
VPS29-202ENST00000447578 LECT2O14960 151 aa2.35□□□□□ -2.03
VPS29-202ENST00000447578 SPAG11BQ08648 103 aa2.35□□□□□ -2.03
VPS29-202ENST00000447578 SPTAN1Q13813 2472 aaKnown RBP2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms