RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 ITPR1Q14643 2758 aa1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 IGKV2-40A0A087WW87 121 aaPredicted RBP1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 F2Z2F3 143 aa1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 IGKV2D-40P01614 121 aaPredicted RBP1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 VMO1Q7Z5L0 202 aa1.23□□□□□ -2.21
CCDC88A-208ENST00000444458 TENM3Q9P273 2699 aa1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 TRBV25-1A0A075B6N4 114 aa1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 F8VRH5 84 aa1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 BCE1O60756 84 aa1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 IGLC2P0DOY2 106 aa1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 IGLC3P0DOY3 106 aa1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 Q6ZQY7 126 aa1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 LINC00643Q86TS7 51 aa1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 BAGE2Q86Y30 109 aa1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 MYH8P13535 1937 aa1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 CEP192Q8TEP8 1941 aa1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 H7BZZ5 65 aa1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 LEPROTL1O95214 131 aa1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 HMGN3Q15651 99 aa1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 BVES-AS1Q5T3Y7 98 aa1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 BAGE3Q86Y29 109 aa1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 FAM223AQ8IWN6 122 aa1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 PATJQ8NI35 1801 aa1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 CFDP00746 253 aaPredicted RBP1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 SAA2P0DJI9 122 aaPredicted RBP1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 Q5VV11 94 aa1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 S100ZQ8WXG8 99 aa1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 BPESC1Q9GZL8 116 aa1.22□□□□□ -2.21
CCDC88A-208ENST00000444458 UBR5O95071 2799 aaPredicted RBP1.21□□□□□ -2.21
CCDC88A-208ENST00000444458 TENM4Q6N022 2769 aa1.21□□□□□ -2.21
CCDC88A-208ENST00000444458 COL5A1P20908 1838 aaPredicted RBP1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 F8WEM9 126 aa1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 INE1O15225 51 aa1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 ZCCHC13Q8WW36 166 aaKnown RBP1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 PARP14Q460N5 1801 aa1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 HERC1Q15751 4861 aa1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 D6R8Y8 96 aa1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 M0R135 149 aa1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 M0R3E3 92 aa1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 SMIM13P0DJ93 91 aa1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 LCE1FQ5T754 118 aa1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 MUSTN1Q8IVN3 82 aa1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 DEFB119Q8N690 84 aa1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 ZNF625Q96I27 306 aaPredicted RBP1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 LINC00208Q96KT6 92 aa1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 PRR15LQ9BU68 103 aa1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 INTS1Q8N201 2190 aaKnown RBP1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 AHNAK2Q8IVF2 5795 aa1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 C7orf77A4D0Y5 90 aa1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 CAV3P56539 151 aa1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 KLKP1Q107X0 134 aa1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 KRTAP2-2Q9BYT5 123 aa1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 TMEM14BQ9NUH8 114 aa1.21□□□□□ -2.22
CCDC88A-208ENST00000444458 GBF1Q92538 1859 aa1.2□□□□□ -2.22
CCDC88A-208ENST00000444458 UBR4Q5T4S7 5183 aa1.2□□□□□ -2.22
CCDC88A-208ENST00000444458 FAT3Q8TDW7 4589 aa1.2□□□□□ -2.22
CCDC88A-208ENST00000444458 FAM223BA6NKX1 122 aa1.2□□□□□ -2.22
CCDC88A-208ENST00000444458 SPINT3P49223 89 aa1.2□□□□□ -2.22
CCDC88A-208ENST00000444458 IGKV3D-7A0A0C4DH55 119 aa1.2□□□□□ -2.22
CCDC88A-208ENST00000444458 IGKV3OR2-268A0A0C4DH90 116 aa1.2□□□□□ -2.22
CCDC88A-208ENST00000444458 M0R2N4 97 aa1.2□□□□□ -2.22
CCDC88A-208ENST00000444458 HMGN2P05204 90 aaKnown RBP1.2□□□□□ -2.22
CCDC88A-208ENST00000444458 C5orf56Q8N8D9 126 aa1.2□□□□□ -2.22
CCDC88A-208ENST00000444458 CDC42SE2Q9NRR3 84 aa1.2□□□□□ -2.22
CCDC88A-208ENST00000444458 ACYP2P14621 99 aa1.2□□□□□ -2.22
CCDC88A-208ENST00000444458 SMIM4Q8WVI0 70 aa1.2□□□□□ -2.22
CCDC88A-208ENST00000444458 TCHHQ07283 1943 aa1.2□□□□□ -2.22
CCDC88A-208ENST00000444458 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.2□□□□□ -2.22
CCDC88A-208ENST00000444458 UQCR11O14957 56 aa1.2□□□□□ -2.22
CCDC88A-208ENST00000444458 MGPP08493 103 aa1.2□□□□□ -2.22
CCDC88A-208ENST00000444458 CFAP126Q5VTH2 177 aa1.2□□□□□ -2.22
CCDC88A-208ENST00000444458 MUC22E2RYF6 1773 aaPredicted RBP1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 MDC1Q14676 2089 aaKnown RBP1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 A0A087WXM4 84 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 PP632Q6XCG6 107 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 C6orf201Q7Z4U5 140 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 CACNA1CQ13936 2221 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 LOC110117498A0A087WWA1 95 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 TRAV1-2A0A0B4J238 106 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 NBDYA0A0U1RRE5 68 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 MYMXA0A1B0GTQ4 84 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 CLPSL1A2RUU4 121 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 CEBPZOSA8MTT3 80 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 PLGLAQ15195 96 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 Q6ZRN7 208 aaPredicted RBP1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 FDCSPQ8NFU4 85 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 AMELXQ99217 191 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 CYSTM1Q9H1C7 97 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 PLXNB2O15031 1838 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 PCLOQ9Y6V0 5065 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 EXPH5Q8NEV8 1989 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 IQCF6A8MYZ5 107 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 NCR3O14931 201 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 HCRTO43612 131 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 CCL18P55774 89 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 C18orf32Q8TCD1 76 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 OBSCN-AS1Q96MR7 158 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 CCL19Q99731 98 aa1.19□□□□□ -2.22
CCDC88A-208ENST00000444458 DOCK11Q5JSL3 2073 aa1.18□□□□□ -2.22
CCDC88A-208ENST00000444458 SDK1Q7Z5N4 2213 aa1.18□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 114.5 ms