RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 SMIM1B2RUZ4 78 aa4.67□□□□□ -1.66
CD44-211ENST00000442151 B5MCH6 92 aa4.67□□□□□ -1.66
CD44-211ENST00000442151 LINC00614P0C842 121 aa4.67□□□□□ -1.66
CD44-211ENST00000442151 PCP4P48539 62 aa4.67□□□□□ -1.66
CD44-211ENST00000442151 UBE2AP49459 152 aa4.67□□□□□ -1.66
CD44-211ENST00000442151 NDUFA6P56556 154 aa4.67□□□□□ -1.66
CD44-211ENST00000442151 KRTAP7-1Q8IUC3 87 aa4.67□□□□□ -1.66
CD44-211ENST00000442151 LINC00167Q96N53 147 aa4.67□□□□□ -1.66
CD44-211ENST00000442151 LRP2P98164 4655 aa4.66□□□□□ -1.66
CD44-211ENST00000442151 TNXBP22105 4242 aa4.66□□□□□ -1.66
CD44-211ENST00000442151 PRR4Q16378 134 aa4.66□□□□□ -1.66
CD44-211ENST00000442151 KRTAP11-1Q8IUC1 163 aa4.66□□□□□ -1.66
CD44-211ENST00000442151 TYMSOSQ8TAI1 123 aa4.66□□□□□ -1.66
CD44-211ENST00000442151 RPS10P5Q9NQ39 176 aa4.66□□□□□ -1.66
CD44-211ENST00000442151 A0A0U1RQV1 116 aa4.65□□□□□ -1.66
CD44-211ENST00000442151 LINC00587B1AMM8 73 aa4.65□□□□□ -1.66
CD44-211ENST00000442151 KRTAP1-4P0C5Y4 121 aa4.65□□□□□ -1.66
CD44-211ENST00000442151 SPINK8P0C7L1 97 aa4.65□□□□□ -1.66
CD44-211ENST00000442151 IGLC3P0DOY3 106 aa4.65□□□□□ -1.66
CD44-211ENST00000442151 TRAPPC1Q9Y5R8 145 aa4.65□□□□□ -1.66
CD44-211ENST00000442151 HBDP02042 147 aa4.65□□□□□ -1.67
CD44-211ENST00000442151 ADCYAP1P18509 176 aa4.65□□□□□ -1.67
CD44-211ENST00000442151 FAM229BQ4G0N7 80 aa4.65□□□□□ -1.67
CD44-211ENST00000442151 COMMD7Q86VX2 200 aa4.65□□□□□ -1.67
CD44-211ENST00000442151 S100A12P80511 92 aa4.64□□□□□ -1.67
CD44-211ENST00000442151 IGKV2D-26A0A0A0MRZ7 120 aa4.63□□□□□ -1.67
CD44-211ENST00000442151 RPL37AP8A6NKH3 93 aa4.63□□□□□ -1.67
CD44-211ENST00000442151 PFN2P35080 140 aa4.63□□□□□ -1.67
CD44-211ENST00000442151 C10orf91Q5T1B1 145 aa4.63□□□□□ -1.67
CD44-211ENST00000442151 ERG28Q9UKR5 140 aa4.63□□□□□ -1.67
CD44-211ENST00000442151 IGLV5-39A0A0G2JS06 123 aa4.62□□□□□ -1.67
CD44-211ENST00000442151 SNAPINO95295 136 aa4.62□□□□□ -1.67
CD44-211ENST00000442151 TMEM170BQ5T4T1 132 aa4.62□□□□□ -1.67
CD44-211ENST00000442151 BAGE3Q86Y29 109 aa4.62□□□□□ -1.67
CD44-211ENST00000442151 ZNF22P17026 224 aaPredicted RBP4.61□□□□□ -1.67
CD44-211ENST00000442151 SPAG11AQ6PDA7 123 aa4.61□□□□□ -1.67
CD44-211ENST00000442151 SVBPQ8N300 66 aa4.61□□□□□ -1.67
CD44-211ENST00000442151 CHCHD1Q96BP2 118 aaKnown RBP4.61□□□□□ -1.67
CD44-211ENST00000442151 MAP1LC3CQ9BXW4 147 aa4.61□□□□□ -1.67
CD44-211ENST00000442151 SND1-IT1Q9HBX3 110 aa4.61□□□□□ -1.67
CD44-211ENST00000442151 ZNF706Q9Y5V0 76 aaPredicted RBP4.61□□□□□ -1.67
CD44-211ENST00000442151 TSPAN13O95857 204 aa4.6□□□□□ -1.67
CD44-211ENST00000442151 LINC00158P58513 81 aa4.6□□□□□ -1.67
CD44-211ENST00000442151 HERV-K104P63124 156 aa4.6□□□□□ -1.67
CD44-211ENST00000442151 FAM19A1Q7Z5A9 133 aa4.6□□□□□ -1.67
CD44-211ENST00000442151 C18orf32Q8TCD1 76 aa4.6□□□□□ -1.67
CD44-211ENST00000442151 CHTOPQ9Y3Y2 248 aaKnown RBP4.6□□□□□ -1.67
CD44-211ENST00000442151 TRAV12-1A0A0B4J245 112 aa4.6□□□□□ -1.67
CD44-211ENST00000442151 A4D1N5 150 aa4.6□□□□□ -1.67
CD44-211ENST00000442151 M0R378 163 aa4.6□□□□□ -1.67
CD44-211ENST00000442151 CBLN2Q8IUK8 224 aa4.6□□□□□ -1.67
CD44-211ENST00000442151 IGKV2-28A0A075B6P5 120 aa4.59□□□□□ -1.67
CD44-211ENST00000442151 IGKV2D-28P01615 120 aa4.59□□□□□ -1.67
CD44-211ENST00000442151 VPREB1P12018 145 aa4.59□□□□□ -1.67
CD44-211ENST00000442151 LINC00304Q8N9R0 145 aa4.59□□□□□ -1.67
CD44-211ENST00000442151 APOC3P02656 99 aa4.58□□□□□ -1.68
CD44-211ENST00000442151 IFI27L1Q96BM0 104 aa4.58□□□□□ -1.68
CD44-211ENST00000442151 TMEM126AQ9H061 195 aa4.58□□□□□ -1.68
CD44-211ENST00000442151 MEIG1Q5JSS6 88 aa4.58□□□□□ -1.68
CD44-211ENST00000442151 KRTAP13-1Q8IUC0 172 aa4.58□□□□□ -1.68
CD44-211ENST00000442151 A0A087X002 238 aa4.57□□□□□ -1.68
CD44-211ENST00000442151 MYMXA0A1B0GTQ4 84 aa4.57□□□□□ -1.68
CD44-211ENST00000442151 C11orf86A6NJI1 115 aa4.57□□□□□ -1.68
CD44-211ENST00000442151 ZNF625Q96I27 306 aaPredicted RBP4.57□□□□□ -1.68
CD44-211ENST00000442151 KRTAP3-1Q9BYR8 98 aa4.57□□□□□ -1.68
CD44-211ENST00000442151 CBY1Q9Y3M2 126 aa4.57□□□□□ -1.68
CD44-211ENST00000442151 TMEM223A0PJW6 202 aa4.56□□□□□ -1.68
CD44-211ENST00000442151 PRYO14603 147 aa4.56□□□□□ -1.68
CD44-211ENST00000442151 HSBP1O75506 76 aa4.56□□□□□ -1.68
CD44-211ENST00000442151 A0A096LNJ9 63 aa4.56□□□□□ -1.68
CD44-211ENST00000442151 TRIAP1O43715 76 aa4.56□□□□□ -1.68
CD44-211ENST00000442151 ETDCA0A1B0GVM5 59 aa4.55□□□□□ -1.68
CD44-211ENST00000442151 HERVK_113P61574 105 aa4.55□□□□□ -1.68
CD44-211ENST00000442151 PRLHP81277 87 aa4.55□□□□□ -1.68
CD44-211ENST00000442151 PMCHL1Q16048 86 aa4.55□□□□□ -1.68
CD44-211ENST00000442151 LINC00337Q8N6G1 96 aa4.55□□□□□ -1.68
CD44-211ENST00000442151 PLEKHB2Q96CS7 222 aa4.55□□□□□ -1.68
CD44-211ENST00000442151 URB1-AS1Q96HZ7 61 aa4.55□□□□□ -1.68
CD44-211ENST00000442151 HIGD2AQ9BW72 106 aa4.55□□□□□ -1.68
CD44-211ENST00000442151 TMEM238C9JI98 176 aa4.54□□□□□ -1.68
CD44-211ENST00000442151 HSPB8Q9UJY1 196 aa4.54□□□□□ -1.68
CD44-211ENST00000442151 IGLV7-46A0A075B6I9 117 aa4.53□□□□□ -1.68
CD44-211ENST00000442151 SCO1O75880 301 aa4.53□□□□□ -1.68
CD44-211ENST00000442151 FP248Q71RG6 208 aaPredicted RBP4.53□□□□□ -1.68
CD44-211ENST00000442151 BOD1L2Q8IYS8 172 aa4.53□□□□□ -1.68
CD44-211ENST00000442151 NDUFA12Q9UI09 145 aa4.53□□□□□ -1.68
CD44-211ENST00000442151 LEPROTL1O95214 131 aa4.53□□□□□ -1.68
CD44-211ENST00000442151 SMIM13P0DJ93 91 aa4.53□□□□□ -1.68
CD44-211ENST00000442151 PLNP26678 52 aa4.53□□□□□ -1.68
CD44-211ENST00000442151 NMUP48645 174 aa4.53□□□□□ -1.68
CD44-211ENST00000442151 KRTAP13-2Q52LG2 175 aa4.53□□□□□ -1.68
CD44-211ENST00000442151 MIEN1Q9BRT3 115 aa4.53□□□□□ -1.68
CD44-211ENST00000442151 KCNQ1DNQ9H478 68 aa4.53□□□□□ -1.68
CD44-211ENST00000442151 ANAPC11Q9NYG5 84 aa4.53□□□□□ -1.68
CD44-211ENST00000442151 TRBV10-2A0A0K0K1G8 114 aa4.52□□□□□ -1.69
CD44-211ENST00000442151 A0A0U1RRA0 63 aa4.52□□□□□ -1.69
CD44-211ENST00000442151 LEPROTO15243 131 aa4.52□□□□□ -1.69
CD44-211ENST00000442151 HINT1P49773 126 aaPredicted RBP4.52□□□□□ -1.69
CD44-211ENST00000442151 TPRXLQ17RH7 258 aa4.52□□□□□ -1.69
CD44-211ENST00000442151 MIR7-3HGQ8N6C7 128 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms