RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 LINC01561Q8N1V8 128 aa8.58□□□□□ -1.04
CDH3-202ENST00000429102 PRB2P02812 416 aaPredicted RBP8.58□□□□□ -1.04
CDH3-202ENST00000429102 Q8N814 137 aa8.58□□□□□ -1.04
CDH3-202ENST00000429102 UPK3BQ9BT76 320 aa8.57□□□□□ -1.04
CDH3-202ENST00000429102 SPAG11BQ08648 103 aa8.57□□□□□ -1.04
CDH3-202ENST00000429102 CELA1Q9UNI1 258 aa8.56□□□□□ -1.04
CDH3-202ENST00000429102 STAB1Q9NY15 2570 aa8.56□□□□□ -1.04
CDH3-202ENST00000429102 FAM19A3Q7Z5A8 133 aa8.56□□□□□ -1.04
CDH3-202ENST00000429102 SERP2Q8N6R1 65 aa8.56□□□□□ -1.04
CDH3-202ENST00000429102 DEFB105AQ8NG35 78 aa8.56□□□□□ -1.04
CDH3-202ENST00000429102 Q6ZQY7 126 aa8.55□□□□□ -1.04
CDH3-202ENST00000429102 NANOS2P60321 138 aaKnown RBP8.55□□□□□ -1.04
CDH3-202ENST00000429102 IGHV4-28A0A0C4DH34 117 aa8.55□□□□□ -1.04
CDH3-202ENST00000429102 KRTAP10-3P60369 221 aa8.55□□□□□ -1.04
CDH3-202ENST00000429102 CYSRT1A8MQ03 144 aa8.54□□□□□ -1.04
CDH3-202ENST00000429102 COL6A5A8TX70 2615 aa8.54□□□□□ -1.04
CDH3-202ENST00000429102 C4orf26Q17RF5 130 aa8.54□□□□□ -1.04
CDH3-202ENST00000429102 X6R8D5 127 aa8.54□□□□□ -1.04
CDH3-202ENST00000429102 Q8IZM0 81 aa8.54□□□□□ -1.04
CDH3-202ENST00000429102 C2orf48Q96LS8 159 aa8.53□□□□□ -1.04
CDH3-202ENST00000429102 CCKP06307 115 aa8.53□□□□□ -1.04
CDH3-202ENST00000429102 CMC4P56277 68 aaPredicted RBP8.53□□□□□ -1.04
CDH3-202ENST00000429102 RBM3P98179 157 aaKnown RBP8.53□□□□□ -1.04
CDH3-202ENST00000429102 CD164L2Q6UWJ8 174 aa8.53□□□□□ -1.04
CDH3-202ENST00000429102 SMIM9A6NGZ8 99 aa8.52□□□□□ -1.05
CDH3-202ENST00000429102 TMEM256-PLSCR3K7ERE1 68 aa8.52□□□□□ -1.05
CDH3-202ENST00000429102 KIAA0087Q14695 138 aa8.5□□□□□ -1.05
CDH3-202ENST00000429102 Q6JHZ5 121 aa8.5□□□□□ -1.05
CDH3-202ENST00000429102 Q8N9L7 120 aa8.5□□□□□ -1.05
CDH3-202ENST00000429102 TRBV10-3A0A0K0K1G6 114 aa8.49□□□□□ -1.05
CDH3-202ENST00000429102 RETNQ9HD89 108 aa8.49□□□□□ -1.05
CDH3-202ENST00000429102 JMJD7-PLA2G4BH0Y9G9 81 aa8.48□□□□□ -1.05
CDH3-202ENST00000429102 ANK3Q12955 4377 aaKnown RBP8.48□□□□□ -1.05
CDH3-202ENST00000429102 TENM3Q9P273 2699 aa8.48□□□□□ -1.05
CDH3-202ENST00000429102 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.47□□□□□ -1.05
CDH3-202ENST00000429102 NSD1Q96L73 2696 aaPredicted RBP8.47□□□□□ -1.05
CDH3-202ENST00000429102 INAFM1C9JVW0 142 aa8.47□□□□□ -1.05
CDH3-202ENST00000429102 RMI2Q96E14 147 aa8.47□□□□□ -1.05
CDH3-202ENST00000429102 DPH3Q96FX2 82 aa8.47□□□□□ -1.05
CDH3-202ENST00000429102 A0A1B0GUV1 79 aa8.47□□□□□ -1.05
CDH3-202ENST00000429102 KRTAP1-1Q07627 177 aa8.46□□□□□ -1.05
CDH3-202ENST00000429102 ZNF561-AS1K7EIQ3 104 aa8.46□□□□□ -1.06
CDH3-202ENST00000429102 CRYGAP11844 174 aa8.46□□□□□ -1.06
CDH3-202ENST00000429102 C3orf84H3BNL1 204 aa8.46□□□□□ -1.06
CDH3-202ENST00000429102 LINC00575Q6W349 94 aa8.46□□□□□ -1.06
CDH3-202ENST00000429102 TRAV10A0A0B4J240 114 aa8.45□□□□□ -1.06
CDH3-202ENST00000429102 CAMK2N2Q96S95 79 aa8.45□□□□□ -1.06
CDH3-202ENST00000429102 LY6G6DO95868 133 aa8.44□□□□□ -1.06
CDH3-202ENST00000429102 C5orf47Q569G3 176 aa8.44□□□□□ -1.06
CDH3-202ENST00000429102 WFDC10BQ8IUB3 73 aa8.43□□□□□ -1.06
CDH3-202ENST00000429102 MPLKIPQ8TAP9 179 aa8.43□□□□□ -1.06
CDH3-202ENST00000429102 TMEM258P61165 79 aa8.43□□□□□ -1.06
CDH3-202ENST00000429102 MGAM2Q2M2H8 2515 aa8.43□□□□□ -1.06
CDH3-202ENST00000429102 OBSCN-AS1Q96MR7 158 aa8.43□□□□□ -1.06
CDH3-202ENST00000429102 FAM236DA0A1B0GTK5 79 aa8.42□□□□□ -1.06
CDH3-202ENST00000429102 FAM236CP0DP71 79 aa8.42□□□□□ -1.06
CDH3-202ENST00000429102 LRCOL1A6NCL2 159 aa8.42□□□□□ -1.06
CDH3-202ENST00000429102 SPART-AS1P0CW21 52 aa8.42□□□□□ -1.06
CDH3-202ENST00000429102 C6orf48Q9UBA6 75 aa8.42□□□□□ -1.06
CDH3-202ENST00000429102 F8WEM9 126 aa8.41□□□□□ -1.06
CDH3-202ENST00000429102 OXLD1Q5BKU9 147 aa8.41□□□□□ -1.06
CDH3-202ENST00000429102 IGKV2D-24A0A075B6R9 120 aa8.41□□□□□ -1.06
CDH3-202ENST00000429102 OXTP01178 125 aa8.41□□□□□ -1.06
CDH3-202ENST00000429102 Q6ZVQ6 151 aa8.41□□□□□ -1.06
CDH3-202ENST00000429102 DIRC1Q969H9 104 aa8.41□□□□□ -1.06
CDH3-202ENST00000429102 LINC01547P58512 204 aaPredicted RBP8.41□□□□□ -1.06
CDH3-202ENST00000429102 C1orf43Q9BWL3 253 aa8.4□□□□□ -1.06
CDH3-202ENST00000429102 PKIGQ9Y2B9 76 aa8.4□□□□□ -1.06
CDH3-202ENST00000429102 A0A0U1RQV1 116 aa8.4□□□□□ -1.07
CDH3-202ENST00000429102 MRAPQ8TCY5 172 aa8.4□□□□□ -1.07
CDH3-202ENST00000429102 LYRM9A8MSI8 78 aa8.39□□□□□ -1.07
CDH3-202ENST00000429102 C16orf95Q9H693 158 aa8.39□□□□□ -1.07
CDH3-202ENST00000429102 CSMD3Q7Z407 3707 aa8.39□□□□□ -1.07
CDH3-202ENST00000429102 IGHV4-30-4P0DP06 118 aa8.39□□□□□ -1.07
CDH3-202ENST00000429102 Q6ZQT0 140 aa8.39□□□□□ -1.07
CDH3-202ENST00000429102 ZNF73O43830 326 aaPredicted RBP8.39□□□□□ -1.07
CDH3-202ENST00000429102 APOC4P55056 127 aa8.39□□□□□ -1.07
CDH3-202ENST00000429102 PRR4Q16378 134 aa8.38□□□□□ -1.07
CDH3-202ENST00000429102 RPL37AP8A6NKH3 93 aa8.37□□□□□ -1.07
CDH3-202ENST00000429102 NDUFC2O95298 119 aa8.37□□□□□ -1.07
CDH3-202ENST00000429102 COX7BP24311 80 aa8.37□□□□□ -1.07
CDH3-202ENST00000429102 COX17Q14061 63 aa8.37□□□□□ -1.07
CDH3-202ENST00000429102 C9orf66Q5T8R8 295 aa8.37□□□□□ -1.07
CDH3-202ENST00000429102 Q6ZRU5 148 aa8.37□□□□□ -1.07
CDH3-202ENST00000429102 TM2D3Q9BRN9 247 aa8.36□□□□□ -1.07
CDH3-202ENST00000429102 LELP1Q5T871 98 aa8.36□□□□□ -1.07
CDH3-202ENST00000429102 LYPD5Q6UWN5 251 aa8.36□□□□□ -1.07
CDH3-202ENST00000429102 Q6ZTC4 211 aa8.36□□□□□ -1.07
CDH3-202ENST00000429102 MUC7Q8TAX7 377 aa8.36□□□□□ -1.07
CDH3-202ENST00000429102 KPRPQ5T749 579 aaPredicted RBP8.35□□□□□ -1.07
CDH3-202ENST00000429102 LINC00612Q8N6U2 182 aa8.35□□□□□ -1.07
CDH3-202ENST00000429102 Q8NAQ8 132 aa8.35□□□□□ -1.07
CDH3-202ENST00000429102 J3QKU1 62 aa8.34□□□□□ -1.07
CDH3-202ENST00000429102 BPY2O14599 106 aa8.34□□□□□ -1.07
CDH3-202ENST00000429102 NREPQ16612 68 aa8.34□□□□□ -1.07
CDH3-202ENST00000429102 BRK1Q8WUW1 75 aa8.34□□□□□ -1.07
CDH3-202ENST00000429102 LINC00474Q9P2X8 69 aa8.32□□□□□ -1.08
CDH3-202ENST00000429102 IGLV6-57P01721 117 aa8.31□□□□□ -1.08
CDH3-202ENST00000429102 NKAPP1Q8N9T2 125 aa8.31□□□□□ -1.08
CDH3-202ENST00000429102 LINC00167Q96N53 147 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms