RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 PLAC8L1A1L4L8 177 aa6.02□□□□□ -1.45
USP40-203ENST00000427112 LINC00959A0A1B0GUT2 108 aa6.02□□□□□ -1.45
USP40-203ENST00000427112 FAM240AA0A1B0GVK7 77 aa6.02□□□□□ -1.45
USP40-203ENST00000427112 PSPHP1O15172 72 aa6.02□□□□□ -1.45
USP40-203ENST00000427112 C2orf48Q96LS8 159 aa6.02□□□□□ -1.45
USP40-203ENST00000427112 TMEM86BQ8N661 226 aa6.02□□□□□ -1.45
USP40-203ENST00000427112 NDUFC2-KCTD14E9PQ53 114 aa6.01□□□□□ -1.45
USP40-203ENST00000427112 PMAIP1Q13794 54 aa6.01□□□□□ -1.45
USP40-203ENST00000427112 C10orf25Q5T742 122 aa6.01□□□□□ -1.45
USP40-203ENST00000427112 A0A087WZ39 114 aa6.01□□□□□ -1.45
USP40-203ENST00000427112 TRBV10-1A0A0K0K1A3 114 aa6.01□□□□□ -1.45
USP40-203ENST00000427112 SS18Q15532 418 aa6.01□□□□□ -1.45
USP40-203ENST00000427112 HIGD2BQ4VC39 106 aa6.01□□□□□ -1.45
USP40-203ENST00000427112 FAM19A1Q7Z5A9 133 aa6.01□□□□□ -1.45
USP40-203ENST00000427112 KLK12Q9UKR0 248 aa6.01□□□□□ -1.45
USP40-203ENST00000427112 IGLV5-45A0A087WSX0 123 aa6□□□□□ -1.45
USP40-203ENST00000427112 TRAV13-2A0A0B4J235 113 aa6□□□□□ -1.45
USP40-203ENST00000427112 IGHV3OR16-9A0A0B4J2B5 98 aa6□□□□□ -1.45
USP40-203ENST00000427112 C6orf99Q4VX62 202 aa6□□□□□ -1.45
USP40-203ENST00000427112 UNQ6190/PRO20217Q6UXQ8 127 aa6□□□□□ -1.45
USP40-203ENST00000427112 Q8NDZ9 215 aa6□□□□□ -1.45
USP40-203ENST00000427112 RMI2Q96E14 147 aa6□□□□□ -1.45
USP40-203ENST00000427112 C16orf74Q96GX8 76 aa6□□□□□ -1.45
USP40-203ENST00000427112 M0R2N4 97 aa5.99□□□□□ -1.45
USP40-203ENST00000427112 FSHBP01225 129 aa5.99□□□□□ -1.45
USP40-203ENST00000427112 ORMDL1Q9P0S3 153 aa5.99□□□□□ -1.45
USP40-203ENST00000427112 SMIM26A0A096LP01 95 aa5.98□□□□□ -1.45
USP40-203ENST00000427112 KRTAP1-3Q8IUG1 177 aa5.98□□□□□ -1.45
USP40-203ENST00000427112 CELA1Q9UNI1 258 aa5.98□□□□□ -1.45
USP40-203ENST00000427112 CHCHD10Q8WYQ3 142 aaPredicted RBP5.98□□□□□ -1.45
USP40-203ENST00000427112 IMUPQ9GZP8 106 aa5.98□□□□□ -1.45
USP40-203ENST00000427112 KRTAP10-3P60369 221 aa5.98□□□□□ -1.45
USP40-203ENST00000427112 LINC00474Q9P2X8 69 aa5.97□□□□□ -1.45
USP40-203ENST00000427112 TENM2Q9NT68 2774 aa5.96□□□□□ -1.46
USP40-203ENST00000427112 TRBV6-4A0A1B0GX49 114 aa5.96□□□□□ -1.46
USP40-203ENST00000427112 RPL28P46779 137 aaKnown RBP5.96□□□□□ -1.46
USP40-203ENST00000427112 REG3AQ06141 175 aa5.96□□□□□ -1.46
USP40-203ENST00000427112 DEFB105AQ8NG35 78 aa5.96□□□□□ -1.46
USP40-203ENST00000427112 C19orf73Q9NVV2 129 aa5.96□□□□□ -1.46
USP40-203ENST00000427112 IGLV1-51P01701 117 aa5.95□□□□□ -1.46
USP40-203ENST00000427112 J3QKU1 62 aa5.95□□□□□ -1.46
USP40-203ENST00000427112 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.95□□□□□ -1.46
USP40-203ENST00000427112 CSNK1G2-AS1Q8NCQ2 148 aa5.95□□□□□ -1.46
USP40-203ENST00000427112 INAFM1C9JVW0 142 aa5.95□□□□□ -1.46
USP40-203ENST00000427112 ANK3Q12955 4377 aaKnown RBP5.95□□□□□ -1.46
USP40-203ENST00000427112 FUSP35637 526 aaKnown RBP eCLIP5.94□□□□□ -1.46
USP40-203ENST00000427112 Q8N9L7 120 aa5.94□□□□□ -1.46
USP40-203ENST00000427112 LINC01561Q8N1V8 128 aa5.94□□□□□ -1.46
USP40-203ENST00000427112 SPAG11BQ08648 103 aa5.93□□□□□ -1.46
USP40-203ENST00000427112 TRBV7-7A0A0K0K1E9 115 aa5.92□□□□□ -1.46
USP40-203ENST00000427112 IBA57-AS1B1ANH7 110 aa5.92□□□□□ -1.46
USP40-203ENST00000427112 Q6ZQY7 126 aa5.92□□□□□ -1.46
USP40-203ENST00000427112 OVOL2Q9BRP0 275 aa5.92□□□□□ -1.46
USP40-203ENST00000427112 SRRM2Q9UQ35 2752 aaKnown RBP5.92□□□□□ -1.46
USP40-203ENST00000427112 PRO0255Q9UI72 69 aa5.92□□□□□ -1.46
USP40-203ENST00000427112 SERP1Q9Y6X1 66 aa5.92□□□□□ -1.46
USP40-203ENST00000427112 CYSRT1A8MQ03 144 aa5.92□□□□□ -1.46
USP40-203ENST00000427112 TRBV7-6A0A0J9YX20 115 aa5.91□□□□□ -1.46
USP40-203ENST00000427112 CRYGAP11844 174 aa5.91□□□□□ -1.46
USP40-203ENST00000427112 X6R8D5 127 aa5.91□□□□□ -1.46
USP40-203ENST00000427112 OXLD1Q5BKU9 147 aa5.91□□□□□ -1.46
USP40-203ENST00000427112 CHKB-CPT1BH3BT56 60 aa5.9□□□□□ -1.46
USP40-203ENST00000427112 DEFB121Q5J5C9 76 aa5.9□□□□□ -1.46
USP40-203ENST00000427112 Q8N814 137 aa5.9□□□□□ -1.46
USP40-203ENST00000427112 H0YGX0 51 aa5.89□□□□□ -1.47
USP40-203ENST00000427112 TRBV10-3A0A0K0K1G6 114 aa5.89□□□□□ -1.47
USP40-203ENST00000427112 RPS28P62857 69 aaKnown RBP5.89□□□□□ -1.47
USP40-203ENST00000427112 KRTAP1-1Q07627 177 aa5.89□□□□□ -1.47
USP40-203ENST00000427112 A0A0J9YWU9 116 aa5.88□□□□□ -1.47
USP40-203ENST00000427112 WFDC10BQ8IUB3 73 aa5.88□□□□□ -1.47
USP40-203ENST00000427112 A6NED7 52 aa5.88□□□□□ -1.47
USP40-203ENST00000427112 LY6G6DO95868 133 aa5.88□□□□□ -1.47
USP40-203ENST00000427112 MIFP14174 115 aa5.88□□□□□ -1.47
USP40-203ENST00000427112 NREPQ16612 68 aa5.88□□□□□ -1.47
USP40-203ENST00000427112 STAB2Q8WWQ8 2551 aa5.88□□□□□ -1.47
USP40-203ENST00000427112 COL7A1Q02388 2944 aa5.88□□□□□ -1.47
USP40-203ENST00000427112 F8WDY8 70 aa5.87□□□□□ -1.47
USP40-203ENST00000427112 C3orf84H3BNL1 204 aa5.87□□□□□ -1.47
USP40-203ENST00000427112 A0A0G2JQZ4 141 aa5.87□□□□□ -1.47
USP40-203ENST00000427112 A0A1W2PNN7 141 aa5.87□□□□□ -1.47
USP40-203ENST00000427112 KIAA0087Q14695 138 aa5.86□□□□□ -1.47
USP40-203ENST00000427112 CD164L2Q6UWJ8 174 aa5.86□□□□□ -1.47
USP40-203ENST00000427112 IGKV2D-24A0A075B6R9 120 aa5.86□□□□□ -1.47
USP40-203ENST00000427112 TRAV10A0A0B4J240 114 aa5.86□□□□□ -1.47
USP40-203ENST00000427112 RPL37AP8A6NKH3 93 aa5.86□□□□□ -1.47
USP40-203ENST00000427112 Q6JHZ5 121 aa5.85□□□□□ -1.47
USP40-203ENST00000427112 Q8IZM0 81 aa5.85□□□□□ -1.47
USP40-203ENST00000427112 CAMK2N2Q96S95 79 aa5.85□□□□□ -1.47
USP40-203ENST00000427112 JMJD7-PLA2G4BH0Y9G9 81 aa5.85□□□□□ -1.47
USP40-203ENST00000427112 ZNF561-AS1K7EIQ3 104 aa5.85□□□□□ -1.47
USP40-203ENST00000427112 CCKP06307 115 aa5.85□□□□□ -1.47
USP40-203ENST00000427112 FAM30AQ9NZY2 134 aa5.85□□□□□ -1.47
USP40-203ENST00000427112 IGHV4-30-4P0DP06 118 aa5.83□□□□□ -1.48
USP40-203ENST00000427112 C6orf48Q9UBA6 75 aa5.83□□□□□ -1.48
USP40-203ENST00000427112 TMEM256-PLSCR3K7ERE1 68 aa5.83□□□□□ -1.48
USP40-203ENST00000427112 OXTP01178 125 aa5.83□□□□□ -1.48
USP40-203ENST00000427112 Q6ZTC4 211 aa5.83□□□□□ -1.48
USP40-203ENST00000427112 TRAV7A0A075B6U4 112 aa5.82□□□□□ -1.48
USP40-203ENST00000427112 FAM19A3Q7Z5A8 133 aa5.82□□□□□ -1.48
USP40-203ENST00000427112 LINC00575Q6W349 94 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms