RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 LYPD5Q6UWN5 251 aa8.04□□□□□ -1.12
PTPRF-203ENST00000372407 LY6G6CO95867 125 aa8.03□□□□□ -1.12
PTPRF-203ENST00000372407 A0A087WSZ3 146 aa8.03□□□□□ -1.12
PTPRF-203ENST00000372407 A8MTW9 85 aa8.02□□□□□ -1.12
PTPRF-203ENST00000372407 TRBV7-7A0A0K0K1E9 115 aa8.02□□□□□ -1.13
PTPRF-203ENST00000372407 TRIOO75962 3097 aa8.02□□□□□ -1.13
PTPRF-203ENST00000372407 C1orf195Q5TG92 126 aa8.02□□□□□ -1.13
PTPRF-203ENST00000372407 TMEM254Q8TBM7 123 aa8.02□□□□□ -1.13
PTPRF-203ENST00000372407 ESRGQ1W209 222 aa8.01□□□□□ -1.13
PTPRF-203ENST00000372407 Q6ZRU5 148 aa8.01□□□□□ -1.13
PTPRF-203ENST00000372407 FAM19A4Q96LR4 140 aa8.01□□□□□ -1.13
PTPRF-203ENST00000372407 Q9BRP9 147 aa8□□□□□ -1.13
PTPRF-203ENST00000372407 NUPR2A6NF83 97 aa8□□□□□ -1.13
PTPRF-203ENST00000372407 Q8N2B8 174 aa7.99□□□□□ -1.13
PTPRF-203ENST00000372407 SMCPP49901 116 aaPredicted RBP7.99□□□□□ -1.13
PTPRF-203ENST00000372407 IGLV5-45A0A087WSX0 123 aa7.98□□□□□ -1.13
PTPRF-203ENST00000372407 IGHV6-1A0A0B4J1U7 121 aa7.97□□□□□ -1.13
PTPRF-203ENST00000372407 TRBV7-6A0A0J9YX20 115 aa7.97□□□□□ -1.13
PTPRF-203ENST00000372407 CIRBP-AS1Q8TBR5 109 aa7.97□□□□□ -1.13
PTPRF-203ENST00000372407 CXCL6P80162 114 aa7.97□□□□□ -1.13
PTPRF-203ENST00000372407 PRO0461Q9UI25 63 aa7.97□□□□□ -1.13
PTPRF-203ENST00000372407 COL6A3P12111 3177 aa7.97□□□□□ -1.13
PTPRF-203ENST00000372407 PMAIP1Q13794 54 aa7.96□□□□□ -1.13
PTPRF-203ENST00000372407 MGAM2Q2M2H8 2515 aa7.96□□□□□ -1.14
PTPRF-203ENST00000372407 CFAP46Q8IYW2 2715 aa7.95□□□□□ -1.14
PTPRF-203ENST00000372407 H0Y9P7 68 aa7.94□□□□□ -1.14
PTPRF-203ENST00000372407 PCOTHQ58A44 107 aa7.94□□□□□ -1.14
PTPRF-203ENST00000372407 LINC01556Q5JQF7 62 aa7.94□□□□□ -1.14
PTPRF-203ENST00000372407 DEFB116Q30KQ4 102 aa7.94□□□□□ -1.14
PTPRF-203ENST00000372407 HCG22E2RYF7 251 aa7.94□□□□□ -1.14
PTPRF-203ENST00000372407 C22orf24Q9Y442 160 aa7.93□□□□□ -1.14
PTPRF-203ENST00000372407 PRLHP81277 87 aa7.93□□□□□ -1.14
PTPRF-203ENST00000372407 Q9UF83 564 aa7.93□□□□□ -1.14
PTPRF-203ENST00000372407 SPATA3Q8NHX4 192 aa7.93□□□□□ -1.14
PTPRF-203ENST00000372407 hDV103S1A0JD37 113 aa7.92□□□□□ -1.14
PTPRF-203ENST00000372407 IGLV5-52A0A0A0MRZ9 124 aa7.92□□□□□ -1.14
PTPRF-203ENST00000372407 CENPEQ02224 2701 aa7.92□□□□□ -1.14
PTPRF-203ENST00000372407 PSPHP1O15172 72 aa7.91□□□□□ -1.14
PTPRF-203ENST00000372407 SMCR5Q8TEV8 140 aa7.91□□□□□ -1.14
PTPRF-203ENST00000372407 KIAA0087Q14695 138 aa7.91□□□□□ -1.14
PTPRF-203ENST00000372407 SBSPONQ8IVN8 264 aa7.91□□□□□ -1.14
PTPRF-203ENST00000372407 ATRQ13535 2644 aa7.9□□□□□ -1.14
PTPRF-203ENST00000372407 FHL3Q13643 280 aa7.9□□□□□ -1.14
PTPRF-203ENST00000372407 BCE1O60756 84 aa7.9□□□□□ -1.14
PTPRF-203ENST00000372407 CRYGAP11844 174 aa7.9□□□□□ -1.14
PTPRF-203ENST00000372407 FAM218AQ96MZ4 157 aa7.9□□□□□ -1.14
PTPRF-203ENST00000372407 MAST4O15021 2626 aa7.89□□□□□ -1.15
PTPRF-203ENST00000372407 C6orf48Q9UBA6 75 aa7.89□□□□□ -1.15
PTPRF-203ENST00000372407 XIRP2A4UGR9 3374 aa7.88□□□□□ -1.15
PTPRF-203ENST00000372407 BPTFQ12830 3046 aa7.87□□□□□ -1.15
PTPRF-203ENST00000372407 A0A1B0GW54 56 aa7.87□□□□□ -1.15
PTPRF-203ENST00000372407 LINC00167Q96N53 147 aa7.87□□□□□ -1.15
PTPRF-203ENST00000372407 DSPP15924 2871 aaKnown RBP7.87□□□□□ -1.15
PTPRF-203ENST00000372407 KRTAP24-1Q3LI83 254 aa7.87□□□□□ -1.15
PTPRF-203ENST00000372407 C1orf64Q8NEQ6 169 aa7.87□□□□□ -1.15
PTPRF-203ENST00000372407 MGAQ8IWI9 3026 aa7.86□□□□□ -1.15
PTPRF-203ENST00000372407 WDFY4Q6ZS81 3184 aa7.86□□□□□ -1.15
PTPRF-203ENST00000372407 KLK9Q2XQG4 91 aa7.86□□□□□ -1.15
PTPRF-203ENST00000372407 C1orf134Q5TEV5 83 aa7.85□□□□□ -1.15
PTPRF-203ENST00000372407 X6R8D5 127 aa7.85□□□□□ -1.15
PTPRF-203ENST00000372407 SMIM29Q86T20 159 aa7.85□□□□□ -1.15
PTPRF-203ENST00000372407 AKAP13Q12802 2813 aa7.84□□□□□ -1.15
PTPRF-203ENST00000372407 H3BNG1 76 aa7.84□□□□□ -1.15
PTPRF-203ENST00000372407 ELOF1P60002 83 aaKnown RBP7.83□□□□□ -1.16
PTPRF-203ENST00000372407 FLNAP21333 2647 aaKnown RBP7.83□□□□□ -1.16
PTPRF-203ENST00000372407 Q6ZQT0 140 aa7.82□□□□□ -1.16
PTPRF-203ENST00000372407 ITPR3Q14573 2671 aa7.82□□□□□ -1.16
PTPRF-203ENST00000372407 SPINK1P00995 79 aa7.82□□□□□ -1.16
PTPRF-203ENST00000372407 RPS28P62857 69 aaKnown RBP7.82□□□□□ -1.16
PTPRF-203ENST00000372407 Q8NBF4 154 aa7.82□□□□□ -1.16
PTPRF-203ENST00000372407 RETNLBQ9BQ08 111 aa7.82□□□□□ -1.16
PTPRF-203ENST00000372407 BAHCC1Q9P281 2608 aa7.82□□□□□ -1.16
PTPRF-203ENST00000372407 LIMD2Q9BT23 127 aa7.81□□□□□ -1.16
PTPRF-203ENST00000372407 CHD6Q8TD26 2715 aa7.81□□□□□ -1.16
PTPRF-203ENST00000372407 IGSF10Q6WRI0 2623 aa7.81□□□□□ -1.16
PTPRF-203ENST00000372407 LOC110117498A0A087WWA1 95 aa7.81□□□□□ -1.16
PTPRF-203ENST00000372407 NHLRC4P0CG21 123 aaPredicted RBP7.8□□□□□ -1.16
PTPRF-203ENST00000372407 LITAFQ99732 161 aa7.8□□□□□ -1.16
PTPRF-203ENST00000372407 FSHBP01225 129 aa7.8□□□□□ -1.16
PTPRF-203ENST00000372407 TP53AIP1Q9HCN2 124 aa7.8□□□□□ -1.16
PTPRF-203ENST00000372407 PRO0628Q9UI54 55 aa7.79□□□□□ -1.16
PTPRF-203ENST00000372407 Q6ZRX8 168 aa7.79□□□□□ -1.16
PTPRF-203ENST00000372407 COL27A1Q8IZC6 1860 aaPredicted RBP7.78□□□□□ -1.16
PTPRF-203ENST00000372407 CFAP54Q96N23 3096 aa7.78□□□□□ -1.16
PTPRF-203ENST00000372407 VCANP13611 3396 aa7.77□□□□□ -1.17
PTPRF-203ENST00000372407 A0A096LNT2 108 aa7.77□□□□□ -1.17
PTPRF-203ENST00000372407 IGKV2D-30A0A075B6S6 120 aa7.76□□□□□ -1.17
PTPRF-203ENST00000372407 IGKV2-30P06310 120 aa7.76□□□□□ -1.17
PTPRF-203ENST00000372407 LINC00476Q8WZB0 136 aa7.76□□□□□ -1.17
PTPRF-203ENST00000372407 MOBPQ13875 183 aa7.75□□□□□ -1.17
PTPRF-203ENST00000372407 Q8NAQ8 132 aa7.75□□□□□ -1.17
PTPRF-203ENST00000372407 GVQW2A0A096LPI5 108 aaPredicted RBP7.75□□□□□ -1.17
PTPRF-203ENST00000372407 H3BPC8 53 aa7.75□□□□□ -1.17
PTPRF-203ENST00000372407 MDFIQ99750 246 aa7.75□□□□□ -1.17
PTPRF-203ENST00000372407 TM2D3Q9BRN9 247 aa7.74□□□□□ -1.17
PTPRF-203ENST00000372407 TEP1Q99973 2627 aaKnown RBP7.74□□□□□ -1.17
PTPRF-203ENST00000372407 KRTAP1-3Q8IUG1 177 aa7.73□□□□□ -1.17
PTPRF-203ENST00000372407 TRAV22A0A0B4J277 110 aa7.72□□□□□ -1.17
PTPRF-203ENST00000372407 VPREB1P12018 145 aa7.72□□□□□ -1.17
PTPRF-203ENST00000372407 IGLV6-57P01721 117 aa7.71□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms