RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 PFN2P35080 140 aa6.74□□□□□ -1.33
HMGB3-201ENST00000325307 PRO1854Q9UHT4 67 aa6.74□□□□□ -1.33
HMGB3-201ENST00000325307 IGHV1-58A0A0C4DH39 117 aa6.74□□□□□ -1.33
HMGB3-201ENST00000325307 C3orf84H3BNL1 204 aa6.74□□□□□ -1.33
HMGB3-201ENST00000325307 COX7A2LO14548 114 aa6.74□□□□□ -1.33
HMGB3-201ENST00000325307 GAGE2AQ6NT46 116 aa6.74□□□□□ -1.33
HMGB3-201ENST00000325307 IBA57-AS1B1ANH7 110 aa6.74□□□□□ -1.33
HMGB3-201ENST00000325307 EPM2AB3EWF7 344 aa6.74□□□□□ -1.33
HMGB3-201ENST00000325307 TOMM7Q9P0U1 55 aa6.74□□□□□ -1.33
HMGB3-201ENST00000325307 SPANXDQ9BXN6 97 aa6.73□□□□□ -1.33
HMGB3-201ENST00000325307 A0A0J9YXY3 114 aa6.73□□□□□ -1.33
HMGB3-201ENST00000325307 LINC01620Q4KN68 170 aa6.73□□□□□ -1.33
HMGB3-201ENST00000325307 A0A087WZ39 114 aa6.73□□□□□ -1.33
HMGB3-201ENST00000325307 SMIM1B2RUZ4 78 aa6.73□□□□□ -1.33
HMGB3-201ENST00000325307 LY6G6CO95867 125 aa6.73□□□□□ -1.33
HMGB3-201ENST00000325307 CYSTM1Q9H1C7 97 aa6.73□□□□□ -1.33
HMGB3-201ENST00000325307 SRSF9Q13242 221 aaKnown RBP eCLIP6.72□□□□□ -1.33
HMGB3-201ENST00000325307 SDIM1Q6ZPB5 146 aa6.72□□□□□ -1.33
HMGB3-201ENST00000325307 STARD9Q9P2P6 4700 aa6.72□□□□□ -1.33
HMGB3-201ENST00000325307 IMUPQ9GZP8 106 aa6.72□□□□□ -1.33
HMGB3-201ENST00000325307 TRBV10-2A0A0K0K1G8 114 aa6.72□□□□□ -1.33
HMGB3-201ENST00000325307 COX7CP15954 63 aa6.72□□□□□ -1.33
HMGB3-201ENST00000325307 RMI2Q96E14 147 aa6.72□□□□□ -1.33
HMGB3-201ENST00000325307 M0R2N4 97 aa6.71□□□□□ -1.33
HMGB3-201ENST00000325307 ADAMTSL4-AS1Q5T5F5 129 aa6.71□□□□□ -1.33
HMGB3-201ENST00000325307 KRTAP1-5Q9BYS1 174 aa6.71□□□□□ -1.33
HMGB3-201ENST00000325307 TRBV30A0A0K0K1B3 111 aa6.71□□□□□ -1.34
HMGB3-201ENST00000325307 IGLV5-39A0A0G2JS06 123 aa6.7□□□□□ -1.34
HMGB3-201ENST00000325307 NBDYA0A0U1RRE5 68 aa6.7□□□□□ -1.34
HMGB3-201ENST00000325307 PRSS2P07478 247 aa6.7□□□□□ -1.34
HMGB3-201ENST00000325307 LYSTQ99698 3801 aa6.7□□□□□ -1.34
HMGB3-201ENST00000325307 DYNC2H1Q8NCM8 4307 aaKnown RBP6.7□□□□□ -1.34
HMGB3-201ENST00000325307 LINC01561Q8N1V8 128 aa6.7□□□□□ -1.34
HMGB3-201ENST00000325307 NTN5Q8WTR8 489 aaPredicted RBP6.7□□□□□ -1.34
HMGB3-201ENST00000325307 DSCR8Q96T75 97 aa6.7□□□□□ -1.34
HMGB3-201ENST00000325307 ATXN8Q156A1 80 aa6.69□□□□□ -1.34
HMGB3-201ENST00000325307 COX7B2Q8TF08 81 aa6.69□□□□□ -1.34
HMGB3-201ENST00000325307 NDUFA12Q9UI09 145 aa6.69□□□□□ -1.34
HMGB3-201ENST00000325307 MUSTN1Q8IVN3 82 aa6.69□□□□□ -1.34
HMGB3-201ENST00000325307 TEX49A0A1B0GTD5 131 aa6.69□□□□□ -1.34
HMGB3-201ENST00000325307 PSCAO43653 123 aa6.69□□□□□ -1.34
HMGB3-201ENST00000325307 H3BT86 120 aa6.68□□□□□ -1.34
HMGB3-201ENST00000325307 SFTA2Q6UW10 78 aa6.68□□□□□ -1.34
HMGB3-201ENST00000325307 PLECQ15149 4684 aaKnown RBP6.68□□□□□ -1.34
HMGB3-201ENST00000325307 LINC00476Q8WZB0 136 aa6.68□□□□□ -1.34
HMGB3-201ENST00000325307 ZNF625Q96I27 306 aaPredicted RBP6.68□□□□□ -1.34
HMGB3-201ENST00000325307 NDUFA1O15239 70 aa6.67□□□□□ -1.34
HMGB3-201ENST00000325307 TRACP01848 142 aa6.67□□□□□ -1.34
HMGB3-201ENST00000325307 KRTAP26-1Q6PEX3 210 aa6.67□□□□□ -1.34
HMGB3-201ENST00000325307 CD164Q04900 197 aa6.67□□□□□ -1.34
HMGB3-201ENST00000325307 SPAG11BQ08648 103 aa6.67□□□□□ -1.34
HMGB3-201ENST00000325307 HIGD2BQ4VC39 106 aa6.67□□□□□ -1.34
HMGB3-201ENST00000325307 Q8IZM0 81 aa6.66□□□□□ -1.34
HMGB3-201ENST00000325307 LECT2O14960 151 aa6.65□□□□□ -1.34
HMGB3-201ENST00000325307 DAND5Q8N907 189 aa6.65□□□□□ -1.34
HMGB3-201ENST00000325307 hADV29S1A0JD25 119 aa6.65□□□□□ -1.34
HMGB3-201ENST00000325307 C2orf82Q6UX34 121 aa6.65□□□□□ -1.34
HMGB3-201ENST00000325307 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.65□□□□□ -1.35
HMGB3-201ENST00000325307 HIST1H4AP62805 103 aaKnown RBP6.65□□□□□ -1.35
HMGB3-201ENST00000325307 USP17L23D6RBM5 183 aa6.64□□□□□ -1.35
HMGB3-201ENST00000325307 ACYP1P07311 99 aa6.64□□□□□ -1.35
HMGB3-201ENST00000325307 NPC2P61916 151 aa6.64□□□□□ -1.35
HMGB3-201ENST00000325307 C6orf223Q8N319 242 aa6.64□□□□□ -1.35
HMGB3-201ENST00000325307 TRIAP1O43715 76 aa6.64□□□□□ -1.35
HMGB3-201ENST00000325307 TIMM17BO60830 172 aa6.64□□□□□ -1.35
HMGB3-201ENST00000325307 C15orf56Q8N910 161 aa6.64□□□□□ -1.35
HMGB3-201ENST00000325307 KIAA0087Q14695 138 aa6.63□□□□□ -1.35
HMGB3-201ENST00000325307 A0A0U1RQV1 116 aa6.63□□□□□ -1.35
HMGB3-201ENST00000325307 CXCL5P42830 114 aa6.62□□□□□ -1.35
HMGB3-201ENST00000325307 SOSTDC1Q6X4U4 206 aa6.62□□□□□ -1.35
HMGB3-201ENST00000325307 CAMK2N2Q96S95 79 aa6.62□□□□□ -1.35
HMGB3-201ENST00000325307 LST1O00453 97 aa6.62□□□□□ -1.35
HMGB3-201ENST00000325307 PMAIP1Q13794 54 aa6.62□□□□□ -1.35
HMGB3-201ENST00000325307 CIRBPQ14011 172 aaKnown RBP6.62□□□□□ -1.35
HMGB3-201ENST00000325307 UNQ6190/PRO20217Q6UXQ8 127 aa6.62□□□□□ -1.35
HMGB3-201ENST00000325307 Q6ZR54 194 aa6.62□□□□□ -1.35
HMGB3-201ENST00000325307 C1orf134Q5TEV5 83 aa6.61□□□□□ -1.35
HMGB3-201ENST00000325307 GVQW2A0A096LPI5 108 aaPredicted RBP6.61□□□□□ -1.35
HMGB3-201ENST00000325307 LINC00158P58513 81 aa6.61□□□□□ -1.35
HMGB3-201ENST00000325307 C10orf25Q5T742 122 aa6.6□□□□□ -1.35
HMGB3-201ENST00000325307 LINC00308Q8TCZ7 52 aa6.6□□□□□ -1.35
HMGB3-201ENST00000325307 SMCR5Q8TEV8 140 aa6.6□□□□□ -1.35
HMGB3-201ENST00000325307 C9orf116Q5BN46 136 aaPredicted RBP6.59□□□□□ -1.35
HMGB3-201ENST00000325307 H7C2G1 150 aa6.59□□□□□ -1.35
HMGB3-201ENST00000325307 DNAH1Q9P2D7 4330 aa6.58□□□□□ -1.36
HMGB3-201ENST00000325307 SYCNQ0VAF6 134 aa6.58□□□□□ -1.36
HMGB3-201ENST00000325307 Q6ZRN7 208 aaPredicted RBP6.58□□□□□ -1.36
HMGB3-201ENST00000325307 Q6ZRU5 148 aa6.58□□□□□ -1.36
HMGB3-201ENST00000325307 LINC00643Q86TS7 51 aa6.58□□□□□ -1.36
HMGB3-201ENST00000325307 FP248Q71RG6 208 aaPredicted RBP6.58□□□□□ -1.36
HMGB3-201ENST00000325307 VPS13DQ5THJ4 4388 aa6.58□□□□□ -1.36
HMGB3-201ENST00000325307 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.58□□□□□ -1.36
HMGB3-201ENST00000325307 NDUFC2O95298 119 aa6.57□□□□□ -1.36
HMGB3-201ENST00000325307 C14orf177Q52M58 125 aa6.57□□□□□ -1.36
HMGB3-201ENST00000325307 MIR7-3HGQ8N6C7 128 aa6.57□□□□□ -1.36
HMGB3-201ENST00000325307 C6orf48Q9UBA6 75 aa6.57□□□□□ -1.36
HMGB3-201ENST00000325307 NDUFC2-KCTD14E9PQ53 114 aa6.57□□□□□ -1.36
HMGB3-201ENST00000325307 C22orf24Q9Y442 160 aa6.56□□□□□ -1.36
HMGB3-201ENST00000325307 ATOX1O00244 68 aa6.56□□□□□ -1.36
HMGB3-201ENST00000325307 BRK1Q8WUW1 75 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms