RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 COPS9Q8WXC6 57 aa5.87□□□□□ -1.47
VPS4B-201ENST00000238497 C15orf53Q8NAA6 179 aa5.86□□□□□ -1.47
VPS4B-201ENST00000238497 TRBV30A0A0K0K1B3 111 aa5.86□□□□□ -1.47
VPS4B-201ENST00000238497 S100A7L2Q5SY68 101 aa5.86□□□□□ -1.47
VPS4B-201ENST00000238497 LECT2O14960 151 aa5.86□□□□□ -1.47
VPS4B-201ENST00000238497 GAGE2EQ4V326 116 aa5.86□□□□□ -1.47
VPS4B-201ENST00000238497 C10orf25Q5T742 122 aa5.86□□□□□ -1.47
VPS4B-201ENST00000238497 GAGE2DQ9UEU5 116 aa5.86□□□□□ -1.47
VPS4B-201ENST00000238497 BIRC6Q9NR09 4857 aa5.85□□□□□ -1.47
VPS4B-201ENST00000238497 ZNF561-AS1K7EIQ3 104 aa5.85□□□□□ -1.47
VPS4B-201ENST00000238497 LYPD5Q6UWN5 251 aa5.85□□□□□ -1.47
VPS4B-201ENST00000238497 BAALC-AS2P0C853 105 aa5.85□□□□□ -1.47
VPS4B-201ENST00000238497 CD164L2Q6UWJ8 174 aa5.85□□□□□ -1.47
VPS4B-201ENST00000238497 M0QXV9 152 aa5.84□□□□□ -1.47
VPS4B-201ENST00000238497 SMIM11BQ8TCY0 68 aa5.84□□□□□ -1.47
VPS4B-201ENST00000238497 TRBV10-2A0A0K0K1G8 114 aa5.84□□□□□ -1.47
VPS4B-201ENST00000238497 TIMM17BO60830 172 aa5.84□□□□□ -1.47
VPS4B-201ENST00000238497 MT-ATP8P03928 68 aa5.84□□□□□ -1.47
VPS4B-201ENST00000238497 TRAV13-2A0A0B4J235 113 aa5.84□□□□□ -1.48
VPS4B-201ENST00000238497 TRAV8-4A0A0B4J246 113 aa5.84□□□□□ -1.48
VPS4B-201ENST00000238497 A0A1B0GUV1 79 aa5.84□□□□□ -1.48
VPS4B-201ENST00000238497 SCGB1A1P11684 91 aa5.84□□□□□ -1.48
VPS4B-201ENST00000238497 LELP1Q5T871 98 aa5.84□□□□□ -1.48
VPS4B-201ENST00000238497 LINC00612Q8N6U2 182 aa5.84□□□□□ -1.48
VPS4B-201ENST00000238497 VPS13DQ5THJ4 4388 aa5.84□□□□□ -1.48
VPS4B-201ENST00000238497 FAM218AQ96MZ4 157 aa5.83□□□□□ -1.48
VPS4B-201ENST00000238497 IBA57-AS1B1ANH7 110 aa5.83□□□□□ -1.48
VPS4B-201ENST00000238497 RPL18AQ02543 176 aaKnown RBP5.83□□□□□ -1.48
VPS4B-201ENST00000238497 IGKV2-28A0A075B6P5 120 aa5.82□□□□□ -1.48
VPS4B-201ENST00000238497 IGKV2D-28P01615 120 aa5.82□□□□□ -1.48
VPS4B-201ENST00000238497 ESRGQ1W209 222 aa5.82□□□□□ -1.48
VPS4B-201ENST00000238497 TTC32Q5I0X7 151 aa5.82□□□□□ -1.48
VPS4B-201ENST00000238497 CAMK2N2Q96S95 79 aa5.82□□□□□ -1.48
VPS4B-201ENST00000238497 LST1O00453 97 aa5.82□□□□□ -1.48
VPS4B-201ENST00000238497 C1orf134Q5TEV5 83 aa5.82□□□□□ -1.48
VPS4B-201ENST00000238497 LINC00588Q9Y4M8 146 aa5.82□□□□□ -1.48
VPS4B-201ENST00000238497 FRAS1Q86XX4 4008 aa5.81□□□□□ -1.48
VPS4B-201ENST00000238497 A0A087WYN8 130 aa5.81□□□□□ -1.48
VPS4B-201ENST00000238497 GAGE2AQ6NT46 116 aa5.81□□□□□ -1.48
VPS4B-201ENST00000238497 XGP55808 180 aa5.81□□□□□ -1.48
VPS4B-201ENST00000238497 ENHOQ6UWT2 76 aa5.81□□□□□ -1.48
VPS4B-201ENST00000238497 C1orf43Q9BWL3 253 aa5.81□□□□□ -1.48
VPS4B-201ENST00000238497 Q8IZM0 81 aa5.8□□□□□ -1.48
VPS4B-201ENST00000238497 ANAPC13Q9BS18 74 aa5.8□□□□□ -1.48
VPS4B-201ENST00000238497 DNAH10Q8IVF4 4471 aa5.8□□□□□ -1.48
VPS4B-201ENST00000238497 SNCGO76070 127 aa5.8□□□□□ -1.48
VPS4B-201ENST00000238497 NBDYA0A0U1RRE5 68 aa5.79□□□□□ -1.48
VPS4B-201ENST00000238497 LINC00336Q6ZUF6 198 aa5.79□□□□□ -1.48
VPS4B-201ENST00000238497 C6orf99Q4VX62 202 aa5.79□□□□□ -1.48
VPS4B-201ENST00000238497 C4orf48Q5BLP8 95 aa5.79□□□□□ -1.48
VPS4B-201ENST00000238497 PPDPFQ9H3Y8 114 aa5.79□□□□□ -1.48
VPS4B-201ENST00000238497 RTL8CO15255 209 aa5.78□□□□□ -1.48
VPS4B-201ENST00000238497 C14orf132Q9NPU4 83 aa5.78□□□□□ -1.48
VPS4B-201ENST00000238497 FAM19A3Q7Z5A8 133 aa5.78□□□□□ -1.48
VPS4B-201ENST00000238497 CDIP1Q9H305 208 aa5.78□□□□□ -1.48
VPS4B-201ENST00000238497 KIAA0087Q14695 138 aa5.77□□□□□ -1.49
VPS4B-201ENST00000238497 H3BT86 120 aa5.76□□□□□ -1.49
VPS4B-201ENST00000238497 TNP2Q05952 138 aa5.76□□□□□ -1.49
VPS4B-201ENST00000238497 Q6ZR54 194 aa5.76□□□□□ -1.49
VPS4B-201ENST00000238497 GAGE2BQ13066 116 aa5.75□□□□□ -1.49
VPS4B-201ENST00000238497 C9orf129Q5T035 196 aaKnown RBP5.75□□□□□ -1.49
VPS4B-201ENST00000238497 Q6ZRU5 148 aa5.75□□□□□ -1.49
VPS4B-201ENST00000238497 Q8NDZ9 215 aa5.75□□□□□ -1.49
VPS4B-201ENST00000238497 TMEM126AQ9H061 195 aa5.75□□□□□ -1.49
VPS4B-201ENST00000238497 LAMTOR3Q9UHA4 124 aa5.75□□□□□ -1.49
VPS4B-201ENST00000238497 RPL28P46779 137 aaKnown RBP5.74□□□□□ -1.49
VPS4B-201ENST00000238497 C6orf48Q9UBA6 75 aa5.74□□□□□ -1.49
VPS4B-201ENST00000238497 H3BNG1 76 aa5.74□□□□□ -1.49
VPS4B-201ENST00000238497 CXCL5P42830 114 aa5.74□□□□□ -1.49
VPS4B-201ENST00000238497 C16orf90A8MZG2 172 aa5.73□□□□□ -1.49
VPS4B-201ENST00000238497 DEFB105AQ8NG35 78 aa5.73□□□□□ -1.49
VPS4B-201ENST00000238497 KRTAP1-5Q9BYS1 174 aa5.73□□□□□ -1.49
VPS4B-201ENST00000238497 DNAH2Q9P225 4427 aa5.73□□□□□ -1.49
VPS4B-201ENST00000238497 TRBV10-3A0A0K0K1G6 114 aa5.73□□□□□ -1.49
VPS4B-201ENST00000238497 H0YGX0 51 aa5.73□□□□□ -1.49
VPS4B-201ENST00000238497 PSCAO43653 123 aa5.73□□□□□ -1.49
VPS4B-201ENST00000238497 KIAA1109Q2LD37 5005 aa5.72□□□□□ -1.49
VPS4B-201ENST00000238497 DPH3Q96FX2 82 aa5.72□□□□□ -1.49
VPS4B-201ENST00000238497 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.72□□□□□ -1.49
VPS4B-201ENST00000238497 RPL37AP8A6NKH3 93 aa5.72□□□□□ -1.49
VPS4B-201ENST00000238497 CCDC179H3BU77 68 aa5.72□□□□□ -1.49
VPS4B-201ENST00000238497 ORMDL1Q9P0S3 153 aa5.72□□□□□ -1.49
VPS4B-201ENST00000238497 IGKV3D-7A0A0C4DH55 119 aa5.71□□□□□ -1.49
VPS4B-201ENST00000238497 IGKV2-24A0A0C4DH68 120 aa5.71□□□□□ -1.49
VPS4B-201ENST00000238497 TRACP01848 142 aa5.71□□□□□ -1.49
VPS4B-201ENST00000238497 C5orf47Q569G3 176 aa5.71□□□□□ -1.5
VPS4B-201ENST00000238497 PRR34Q9NV39 138 aa5.71□□□□□ -1.5
VPS4B-201ENST00000238497 FUSP35637 526 aaKnown RBP eCLIP5.7□□□□□ -1.5
VPS4B-201ENST00000238497 SYCNQ0VAF6 134 aa5.7□□□□□ -1.5
VPS4B-201ENST00000238497 NKAPP1Q8N9T2 125 aa5.7□□□□□ -1.5
VPS4B-201ENST00000238497 UPK3BQ9BT76 320 aa5.7□□□□□ -1.5
VPS4B-201ENST00000238497 Q6ZQY7 126 aa5.69□□□□□ -1.5
VPS4B-201ENST00000238497 PKHD1P08F94 4074 aa5.69□□□□□ -1.5
VPS4B-201ENST00000238497 DNAH6Q9C0G6 4158 aa5.69□□□□□ -1.5
VPS4B-201ENST00000238497 COX17Q14061 63 aa5.69□□□□□ -1.5
VPS4B-201ENST00000238497 A0A1B0GVY2 172 aa5.68□□□□□ -1.5
VPS4B-201ENST00000238497 USP17L23D6RBM5 183 aa5.68□□□□□ -1.5
VPS4B-201ENST00000238497 HIST1H4AP62805 103 aaKnown RBP5.68□□□□□ -1.5
VPS4B-201ENST00000238497 INAFM2P0DMQ5 153 aa5.68□□□□□ -1.5
VPS4B-201ENST00000238497 FAM19A5Q7Z5A7 132 aaPredicted RBP5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms