RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 RPL13AP40429 203 aaKnown RBP9.92□□□□□ -0.82
CCDC47-201ENST00000225726 UNQ6190/PRO20217Q6UXQ8 127 aa9.92□□□□□ -0.82
CCDC47-201ENST00000225726 Q9HAA7 133 aa9.92□□□□□ -0.82
CCDC47-201ENST00000225726 SND1-IT1Q9HBX3 110 aa9.92□□□□□ -0.82
CCDC47-201ENST00000225726 NUPR2A6NF83 97 aa9.91□□□□□ -0.82
CCDC47-201ENST00000225726 C10orf25Q5T742 122 aa9.91□□□□□ -0.82
CCDC47-201ENST00000225726 C15orf56Q8N910 161 aa9.91□□□□□ -0.82
CCDC47-201ENST00000225726 LINC00526Q96FQ7 95 aa9.91□□□□□ -0.82
CCDC47-201ENST00000225726 GVQW2A0A096LPI5 108 aaPredicted RBP9.91□□□□□ -0.82
CCDC47-201ENST00000225726 A0A0U1RQV1 116 aa9.91□□□□□ -0.82
CCDC47-201ENST00000225726 ZNF561-AS1K7EIQ3 104 aa9.9□□□□□ -0.82
CCDC47-201ENST00000225726 MUC7Q8TAX7 377 aa9.9□□□□□ -0.82
CCDC47-201ENST00000225726 TRBV30A0A0K0K1B3 111 aa9.9□□□□□ -0.82
CCDC47-201ENST00000225726 RMI2Q96E14 147 aa9.9□□□□□ -0.82
CCDC47-201ENST00000225726 C9orf116Q5BN46 136 aaPredicted RBP9.9□□□□□ -0.83
CCDC47-201ENST00000225726 HIGD2BQ4VC39 106 aa9.89□□□□□ -0.83
CCDC47-201ENST00000225726 GAGE2AQ6NT46 116 aa9.89□□□□□ -0.83
CCDC47-201ENST00000225726 DYNC2H1Q8NCM8 4307 aaKnown RBP9.89□□□□□ -0.83
CCDC47-201ENST00000225726 UBE2DNLQ8IWF7 75 aa9.88□□□□□ -0.83
CCDC47-201ENST00000225726 C2orf48Q96LS8 159 aa9.88□□□□□ -0.83
CCDC47-201ENST00000225726 DNHD1Q96M86 4753 aa9.88□□□□□ -0.83
CCDC47-201ENST00000225726 STAB2Q8WWQ8 2551 aa9.88□□□□□ -0.83
CCDC47-201ENST00000225726 TRAV13-2A0A0B4J235 113 aa9.88□□□□□ -0.83
CCDC47-201ENST00000225726 F8WDY8 70 aa9.88□□□□□ -0.83
CCDC47-201ENST00000225726 TRIAP1O43715 76 aa9.88□□□□□ -0.83
CCDC47-201ENST00000225726 OR13C6PQ8NH95 151 aa9.88□□□□□ -0.83
CCDC47-201ENST00000225726 J3KT08 172 aa9.87□□□□□ -0.83
CCDC47-201ENST00000225726 CAMK2N2Q96S95 79 aa9.87□□□□□ -0.83
CCDC47-201ENST00000225726 C6orf48Q9UBA6 75 aa9.87□□□□□ -0.83
CCDC47-201ENST00000225726 IGKV2-28A0A075B6P5 120 aa9.87□□□□□ -0.83
CCDC47-201ENST00000225726 IGKV2D-28P01615 120 aa9.87□□□□□ -0.83
CCDC47-201ENST00000225726 CLEC2BQ92478 149 aa9.86□□□□□ -0.83
CCDC47-201ENST00000225726 COX6CP09669 75 aa9.85□□□□□ -0.83
CCDC47-201ENST00000225726 LINC00337Q8N6G1 96 aa9.85□□□□□ -0.83
CCDC47-201ENST00000225726 TMEM126AQ9H061 195 aa9.84□□□□□ -0.83
CCDC47-201ENST00000225726 NDUFC2O95298 119 aa9.84□□□□□ -0.83
CCDC47-201ENST00000225726 CYSTM1Q9H1C7 97 aa9.83□□□□□ -0.84
CCDC47-201ENST00000225726 Q6ZRU5 148 aa9.83□□□□□ -0.84
CCDC47-201ENST00000225726 PRKDCP78527 4128 aaKnown RBP9.83□□□□□ -0.84
CCDC47-201ENST00000225726 MEGF8Q7Z7M0 2845 aa9.82□□□□□ -0.84
CCDC47-201ENST00000225726 ATXN8Q156A1 80 aa9.81□□□□□ -0.84
CCDC47-201ENST00000225726 DNAH1Q9P2D7 4330 aa9.81□□□□□ -0.84
CCDC47-201ENST00000225726 LINC01620Q4KN68 170 aa9.81□□□□□ -0.84
CCDC47-201ENST00000225726 USP17L23D6RBM5 183 aa9.8□□□□□ -0.84
CCDC47-201ENST00000225726 CASC10Q5T4H9 136 aa9.8□□□□□ -0.84
CCDC47-201ENST00000225726 KRTAP1-5Q9BYS1 174 aa9.8□□□□□ -0.84
CCDC47-201ENST00000225726 SYCNQ0VAF6 134 aa9.8□□□□□ -0.84
CCDC47-201ENST00000225726 RPL28P46779 137 aaKnown RBP9.79□□□□□ -0.84
CCDC47-201ENST00000225726 C3orf22Q8N5N4 141 aa9.78□□□□□ -0.84
CCDC47-201ENST00000225726 DNAH7Q8WXX0 4024 aa9.78□□□□□ -0.84
CCDC47-201ENST00000225726 IGKV3D-7A0A0C4DH55 119 aa9.77□□□□□ -0.84
CCDC47-201ENST00000225726 NDUFC2-KCTD14E9PQ53 114 aa9.77□□□□□ -0.85
CCDC47-201ENST00000225726 SMIM11BQ8TCY0 68 aa9.77□□□□□ -0.85
CCDC47-201ENST00000225726 LST1O00453 97 aa9.76□□□□□ -0.85
CCDC47-201ENST00000225726 Q8NDZ9 215 aa9.76□□□□□ -0.85
CCDC47-201ENST00000225726 PRR3P79522 188 aaKnown RBP9.76□□□□□ -0.85
CCDC47-201ENST00000225726 NCR3O14931 201 aa9.75□□□□□ -0.85
CCDC47-201ENST00000225726 A0A087WVE0 104 aa9.74□□□□□ -0.85
CCDC47-201ENST00000225726 SDIM1Q6ZPB5 146 aa9.74□□□□□ -0.85
CCDC47-201ENST00000225726 XAGE1AQ9HD64 81 aa9.74□□□□□ -0.85
CCDC47-201ENST00000225726 CSMD3Q7Z407 3707 aa9.74□□□□□ -0.85
CCDC47-201ENST00000225726 NBDYA0A0U1RRE5 68 aa9.74□□□□□ -0.85
CCDC47-201ENST00000225726 TRBV10-2A0A0K0K1G8 114 aa9.73□□□□□ -0.85
CCDC47-201ENST00000225726 TRACP01848 142 aa9.73□□□□□ -0.85
CCDC47-201ENST00000225726 SLPIP03973 132 aa9.73□□□□□ -0.85
CCDC47-201ENST00000225726 TLX1NBP0CAT3 122 aa9.73□□□□□ -0.85
CCDC47-201ENST00000225726 LECT2O14960 151 aa9.72□□□□□ -0.85
CCDC47-201ENST00000225726 OXTP01178 125 aa9.72□□□□□ -0.85
CCDC47-201ENST00000225726 PSCAO43653 123 aa9.72□□□□□ -0.85
CCDC47-201ENST00000225726 Q6ZRP5 223 aa9.72□□□□□ -0.85
CCDC47-201ENST00000225726 A0A1B0GX51 115 aa9.71□□□□□ -0.85
CCDC47-201ENST00000225726 S100A7L2Q5SY68 101 aa9.71□□□□□ -0.86
CCDC47-201ENST00000225726 FAM236DA0A1B0GTK5 79 aa9.7□□□□□ -0.86
CCDC47-201ENST00000225726 H0YGX0 51 aa9.7□□□□□ -0.86
CCDC47-201ENST00000225726 FAM236CP0DP71 79 aa9.7□□□□□ -0.86
CCDC47-201ENST00000225726 PLECQ15149 4684 aaKnown RBP9.7□□□□□ -0.86
CCDC47-201ENST00000225726 UQCRQO14949 82 aa9.7□□□□□ -0.86
CCDC47-201ENST00000225726 VPREB1P12018 145 aa9.69□□□□□ -0.86
CCDC47-201ENST00000225726 RPL18AQ02543 176 aaKnown RBP9.69□□□□□ -0.86
CCDC47-201ENST00000225726 LINC01600Q96MT4 127 aa9.69□□□□□ -0.86
CCDC47-201ENST00000225726 HIST1H4AP62805 103 aaKnown RBP9.69□□□□□ -0.86
CCDC47-201ENST00000225726 LYSTQ99698 3801 aa9.69□□□□□ -0.86
CCDC47-201ENST00000225726 IGLV6-57P01721 117 aa9.69□□□□□ -0.86
CCDC47-201ENST00000225726 FAM218AQ96MZ4 157 aa9.68□□□□□ -0.86
CCDC47-201ENST00000225726 LINC00336Q6ZUF6 198 aa9.68□□□□□ -0.86
CCDC47-201ENST00000225726 SMCR5Q8TEV8 140 aa9.68□□□□□ -0.86
CCDC47-201ENST00000225726 C14orf177Q52M58 125 aa9.68□□□□□ -0.86
CCDC47-201ENST00000225726 BRK1Q8WUW1 75 aa9.68□□□□□ -0.86
CCDC47-201ENST00000225726 C9orf129Q5T035 196 aaKnown RBP9.67□□□□□ -0.86
CCDC47-201ENST00000225726 STARD9Q9P2P6 4700 aa9.67□□□□□ -0.86
CCDC47-201ENST00000225726 H3BT86 120 aa9.67□□□□□ -0.86
CCDC47-201ENST00000225726 M0R378 163 aa9.66□□□□□ -0.86
CCDC47-201ENST00000225726 CNBPP62633 177 aaKnown RBP9.65□□□□□ -0.86
CCDC47-201ENST00000225726 Q6Q795 121 aa9.65□□□□□ -0.86
CCDC47-201ENST00000225726 DPH3Q96FX2 82 aa9.65□□□□□ -0.87
CCDC47-201ENST00000225726 SEC61GP60059 68 aa9.64□□□□□ -0.87
CCDC47-201ENST00000225726 PLA2G2DQ9UNK4 145 aa9.64□□□□□ -0.87
CCDC47-201ENST00000225726 A0A087WYN8 130 aa9.64□□□□□ -0.87
CCDC47-201ENST00000225726 TRBV10-3A0A0K0K1G6 114 aa9.64□□□□□ -0.87
CCDC47-201ENST00000225726 Q6ZRN7 208 aaPredicted RBP9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 139.7 ms