RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 LINC00173Q6ZV60 143 aa11.48□□□□□ -0.57
CLN3-262ENST00000637699 NXT2Q9NPJ8 142 aaKnown RBP11.48□□□□□ -0.57
CLN3-262ENST00000637699 IGIPA6NJ69 53 aa11.47□□□□□ -0.57
CLN3-262ENST00000637699 K7EMI3 77 aa11.47□□□□□ -0.57
CLN3-262ENST00000637699 C10orf91Q5T1B1 145 aa11.47□□□□□ -0.57
CLN3-262ENST00000637699 TEX43Q6ZNM6 134 aa11.47□□□□□ -0.57
CLN3-262ENST00000637699 LINC00469Q8N7U9 141 aa11.47□□□□□ -0.57
CLN3-262ENST00000637699 AMELXQ99217 191 aa11.47□□□□□ -0.57
CLN3-262ENST00000637699 C22orf24Q9Y442 160 aa11.46□□□□□ -0.57
CLN3-262ENST00000637699 NUPR1O60356 82 aa11.45□□□□□ -0.58
CLN3-262ENST00000637699 GNB1LQ9BYB4 327 aa11.45□□□□□ -0.58
CLN3-262ENST00000637699 VCX2Q9H322 139 aa11.45□□□□□ -0.58
CLN3-262ENST00000637699 A0A087X002 238 aa11.44□□□□□ -0.58
CLN3-262ENST00000637699 S100PP25815 95 aa11.44□□□□□ -0.58
CLN3-262ENST00000637699 C2orf88Q9BSF0 95 aa11.44□□□□□ -0.58
CLN3-262ENST00000637699 PRSS2P07478 247 aa11.43□□□□□ -0.58
CLN3-262ENST00000637699 LCE2AQ5TA79 106 aaPredicted RBP11.43□□□□□ -0.58
CLN3-262ENST00000637699 Q6ZN92 141 aa11.43□□□□□ -0.58
CLN3-262ENST00000637699 XAGE1AQ9HD64 81 aa11.43□□□□□ -0.58
CLN3-262ENST00000637699 TOMM7Q9P0U1 55 aa11.43□□□□□ -0.58
CLN3-262ENST00000637699 NPSP0C0P6 89 aa11.42□□□□□ -0.58
CLN3-262ENST00000637699 CKS1BP61024 79 aa11.42□□□□□ -0.58
CLN3-262ENST00000637699 LBHQ53QV2 105 aaPredicted RBP11.42□□□□□ -0.58
CLN3-262ENST00000637699 LINC01561Q8N1V8 128 aa11.42□□□□□ -0.58
CLN3-262ENST00000637699 TYMSOSQ8TAI1 123 aa11.42□□□□□ -0.58
CLN3-262ENST00000637699 TOMM6Q96B49 74 aa11.42□□□□□ -0.58
CLN3-262ENST00000637699 ALKBH7Q9BT30 221 aaPredicted RBP11.42□□□□□ -0.58
CLN3-262ENST00000637699 APOC3P02656 99 aa11.41□□□□□ -0.58
CLN3-262ENST00000637699 RPS10P5Q9NQ39 176 aa11.41□□□□□ -0.58
CLN3-262ENST00000637699 CRYGAP11844 174 aa11.4□□□□□ -0.58
CLN3-262ENST00000637699 RHEBQ15382 184 aa11.4□□□□□ -0.58
CLN3-262ENST00000637699 C6orf226Q5I0X4 101 aa11.4□□□□□ -0.58
CLN3-262ENST00000637699 FAM19A3Q7Z5A8 133 aa11.4□□□□□ -0.58
CLN3-262ENST00000637699 SVBPQ8N300 66 aa11.4□□□□□ -0.58
CLN3-262ENST00000637699 G0S2P27469 103 aa11.39□□□□□ -0.59
CLN3-262ENST00000637699 RPL28P46779 137 aaKnown RBP11.39□□□□□ -0.59
CLN3-262ENST00000637699 TIMM17AQ99595 171 aa11.39□□□□□ -0.59
CLN3-262ENST00000637699 MRPL18Q9H0U6 180 aaKnown RBP11.39□□□□□ -0.59
CLN3-262ENST00000637699 LINC01546A6NGU7 62 aa11.38□□□□□ -0.59
CLN3-262ENST00000637699 SNAPINO95295 136 aa11.38□□□□□ -0.59
CLN3-262ENST00000637699 BCE1O60756 84 aa11.37□□□□□ -0.59
CLN3-262ENST00000637699 FABP9Q0Z7S8 132 aa11.37□□□□□ -0.59
CLN3-262ENST00000637699 COX19Q49B96 90 aa11.37□□□□□ -0.59
CLN3-262ENST00000637699 ERASQ7Z444 233 aa11.37□□□□□ -0.59
CLN3-262ENST00000637699 MRPL55Q7Z7F7 128 aaKnown RBP11.37□□□□□ -0.59
CLN3-262ENST00000637699 ANAPC11Q9NYG5 84 aa11.37□□□□□ -0.59
CLN3-262ENST00000637699 PAPPA-AS1Q5QFB9 102 aa11.36□□□□□ -0.59
CLN3-262ENST00000637699 Q8IZM0 81 aa11.36□□□□□ -0.59
CLN3-262ENST00000637699 SCGB3A1Q96QR1 104 aa11.36□□□□□ -0.59
CLN3-262ENST00000637699 RETNLBQ9BQ08 111 aa11.36□□□□□ -0.59
CLN3-262ENST00000637699 MUC17Q685J3 4493 aa11.36□□□□□ -0.59
CLN3-262ENST00000637699 KRTAP9-6A0A140TA67 174 aa11.35□□□□□ -0.59
CLN3-262ENST00000637699 CDKN2A-AS1Q9UH64 79 aa11.35□□□□□ -0.59
CLN3-262ENST00000637699 HERVK_113P63121 156 aa11.34□□□□□ -0.59
CLN3-262ENST00000637699 TP73-AS1Q9UF72 201 aa11.34□□□□□ -0.59
CLN3-262ENST00000637699 RPL37AP8A6NKH3 93 aa11.33□□□□□ -0.6
CLN3-262ENST00000637699 SEC11AP67812 179 aa11.32□□□□□ -0.6
CLN3-262ENST00000637699 LINC00167Q96N53 147 aa11.32□□□□□ -0.6
CLN3-262ENST00000637699 GEMIN7Q9H840 131 aaKnown RBP11.32□□□□□ -0.6
CLN3-262ENST00000637699 F8VRH5 84 aa11.31□□□□□ -0.6
CLN3-262ENST00000637699 KRTAP13-2Q52LG2 175 aa11.31□□□□□ -0.6
CLN3-262ENST00000637699 FA2HQ7L5A8 372 aa11.31□□□□□ -0.6
CLN3-262ENST00000637699 GAGE10A6NGK3 116 aa11.3□□□□□ -0.6
CLN3-262ENST00000637699 CDIP1Q9H305 208 aa11.3□□□□□ -0.6
CLN3-262ENST00000637699 CST9LQ9H4G1 147 aa11.3□□□□□ -0.6
CLN3-262ENST00000637699 LINC01549A6NIU2 74 aa11.29□□□□□ -0.6
CLN3-262ENST00000637699 URB1-AS1Q96HZ7 61 aa11.29□□□□□ -0.6
CLN3-262ENST00000637699 SMCO4Q9NRQ5 59 aa11.29□□□□□ -0.6
CLN3-262ENST00000637699 TRAPPC1Q9Y5R8 145 aa11.29□□□□□ -0.6
CLN3-262ENST00000637699 TINCRA0A1B0GVN0 87 aa11.28□□□□□ -0.6
CLN3-262ENST00000637699 A0A096LNJ9 63 aa11.27□□□□□ -0.61
CLN3-262ENST00000637699 SMIM1B2RUZ4 78 aa11.27□□□□□ -0.61
CLN3-262ENST00000637699 SCO1O75880 301 aa11.27□□□□□ -0.61
CLN3-262ENST00000637699 LINC00304Q8N9R0 145 aa11.27□□□□□ -0.61
CLN3-262ENST00000637699 C18orf32Q8TCD1 76 aa11.27□□□□□ -0.61
CLN3-262ENST00000637699 IGLV5-45A0A087WSX0 123 aa11.26□□□□□ -0.61
CLN3-262ENST00000637699 CXCL5P42830 114 aa11.26□□□□□ -0.61
CLN3-262ENST00000637699 UBE2AP49459 152 aa11.26□□□□□ -0.61
CLN3-262ENST00000637699 PMVKQ15126 192 aa11.26□□□□□ -0.61
CLN3-262ENST00000637699 IGLV7-46A0A075B6I9 117 aa11.24□□□□□ -0.61
CLN3-262ENST00000637699 LINC00614P0C842 121 aa11.24□□□□□ -0.61
CLN3-262ENST00000637699 TPRXLQ17RH7 258 aa11.24□□□□□ -0.61
CLN3-262ENST00000637699 PDZD11Q5EBL8 140 aa11.24□□□□□ -0.61
CLN3-262ENST00000637699 KRTAP13-1Q8IUC0 172 aa11.24□□□□□ -0.61
CLN3-262ENST00000637699 SPINK8P0C7L1 97 aa11.23□□□□□ -0.61
CLN3-262ENST00000637699 PMCHL1Q16048 86 aa11.23□□□□□ -0.61
CLN3-262ENST00000637699 FAM229BQ4G0N7 80 aa11.23□□□□□ -0.61
CLN3-262ENST00000637699 COX7B2Q8TF08 81 aa11.23□□□□□ -0.61
CLN3-262ENST00000637699 YPEL4Q96NS1 127 aa11.23□□□□□ -0.61
CLN3-262ENST00000637699 IGKV2D-26A0A0A0MRZ7 120 aa11.22□□□□□ -0.61
CLN3-262ENST00000637699 RAB5BP61020 215 aa11.22□□□□□ -0.61
CLN3-262ENST00000637699 NKAPP1Q8N9T2 125 aa11.21□□□□□ -0.61
CLN3-262ENST00000637699 IGLV5-37A0A075B6J1 123 aa11.19□□□□□ -0.62
CLN3-262ENST00000637699 IGKV2-28A0A075B6P5 120 aa11.19□□□□□ -0.62
CLN3-262ENST00000637699 IGKV2D-28P01615 120 aa11.19□□□□□ -0.62
CLN3-262ENST00000637699 HBDP02042 147 aa11.19□□□□□ -0.62
CLN3-262ENST00000637699 NDUFA6P56556 154 aa11.19□□□□□ -0.62
CLN3-262ENST00000637699 IGLC3P0DOY3 106 aa11.18□□□□□ -0.62
CLN3-262ENST00000637699 PRLHP81277 87 aa11.17□□□□□ -0.62
CLN3-262ENST00000637699 CBLN2Q8IUK8 224 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms