RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 CBLN2Q8IUK8 224 aa9.65□□□□□ -0.86
CLN3-246ENST00000636228 C2orf88Q9BSF0 95 aa9.65□□□□□ -0.86
CLN3-246ENST00000636228 MAP1LC3AQ9H492 121 aa9.65□□□□□ -0.86
CLN3-246ENST00000636228 PRSS2P07478 247 aa9.64□□□□□ -0.87
CLN3-246ENST00000636228 LINC01561Q8N1V8 128 aa9.64□□□□□ -0.87
CLN3-246ENST00000636228 AMELXQ99217 191 aa9.64□□□□□ -0.87
CLN3-246ENST00000636228 VCX2Q9H322 139 aa9.64□□□□□ -0.87
CLN3-246ENST00000636228 XAGE1AQ9HD64 81 aa9.64□□□□□ -0.87
CLN3-246ENST00000636228 CYSLTR1Q9Y271 337 aa9.64□□□□□ -0.87
CLN3-246ENST00000636228 C22orf24Q9Y442 160 aa9.64□□□□□ -0.87
CLN3-246ENST00000636228 CKS1BP61024 79 aa9.63□□□□□ -0.87
CLN3-246ENST00000636228 C6orf226Q5I0X4 101 aa9.63□□□□□ -0.87
CLN3-246ENST00000636228 Q6ZN92 141 aa9.63□□□□□ -0.87
CLN3-246ENST00000636228 Q8N8P6 123 aa9.63□□□□□ -0.87
CLN3-246ENST00000636228 ZNF861PO60384 105 aa9.62□□□□□ -0.87
CLN3-246ENST00000636228 COX19Q49B96 90 aa9.62□□□□□ -0.87
CLN3-246ENST00000636228 GNB1LQ9BYB4 327 aa9.62□□□□□ -0.87
CLN3-246ENST00000636228 SCO1O75880 301 aa9.61□□□□□ -0.87
CLN3-246ENST00000636228 ALKBH7Q9BT30 221 aaPredicted RBP9.61□□□□□ -0.87
CLN3-246ENST00000636228 LAMTOR2Q9Y2Q5 125 aa9.61□□□□□ -0.87
CLN3-246ENST00000636228 IGIPA6NJ69 53 aa9.6□□□□□ -0.87
CLN3-246ENST00000636228 TSPAN13O95857 204 aa9.6□□□□□ -0.87
CLN3-246ENST00000636228 RPL13AP40429 203 aaKnown RBP9.6□□□□□ -0.87
CLN3-246ENST00000636228 Q8IZM0 81 aa9.6□□□□□ -0.87
CLN3-246ENST00000636228 CDKN2A-AS1Q9UH64 79 aa9.6□□□□□ -0.87
CLN3-246ENST00000636228 ORMDL2Q53FV1 153 aa9.59□□□□□ -0.87
CLN3-246ENST00000636228 FAM19A3Q7Z5A8 133 aa9.58□□□□□ -0.88
CLN3-246ENST00000636228 LBHQ53QV2 105 aaPredicted RBP9.57□□□□□ -0.88
CLN3-246ENST00000636228 COLCA2A8K830 154 aa9.56□□□□□ -0.88
CLN3-246ENST00000636228 F8VRH5 84 aa9.56□□□□□ -0.88
CLN3-246ENST00000636228 NUPR1O60356 82 aa9.56□□□□□ -0.88
CLN3-246ENST00000636228 HERVK_113P63121 156 aa9.56□□□□□ -0.88
CLN3-246ENST00000636228 MRPL18Q9H0U6 180 aaKnown RBP9.56□□□□□ -0.88
CLN3-246ENST00000636228 A0A087X002 238 aa9.55□□□□□ -0.88
CLN3-246ENST00000636228 RPL37AP8A6NKH3 93 aa9.55□□□□□ -0.88
CLN3-246ENST00000636228 GEMIN7Q9H840 131 aaKnown RBP9.55□□□□□ -0.88
CLN3-246ENST00000636228 NPSP0C0P6 89 aa9.54□□□□□ -0.88
CLN3-246ENST00000636228 KIAA1644Q3SXP7 199 aa9.54□□□□□ -0.88
CLN3-246ENST00000636228 MRPL55Q7Z7F7 128 aaKnown RBP9.54□□□□□ -0.88
CLN3-246ENST00000636228 NXT2Q9NPJ8 142 aaKnown RBP9.54□□□□□ -0.88
CLN3-246ENST00000636228 ANAPC11Q9NYG5 84 aa9.54□□□□□ -0.88
CLN3-246ENST00000636228 TRAPPC1Q9Y5R8 145 aa9.54□□□□□ -0.88
CLN3-246ENST00000636228 GAGE10A6NGK3 116 aa9.53□□□□□ -0.88
CLN3-246ENST00000636228 BCE1O60756 84 aa9.53□□□□□ -0.88
CLN3-246ENST00000636228 FABP9Q0Z7S8 132 aa9.53□□□□□ -0.88
CLN3-246ENST00000636228 TOMM6Q96B49 74 aa9.53□□□□□ -0.88
CLN3-246ENST00000636228 LINC00167Q96N53 147 aa9.53□□□□□ -0.88
CLN3-246ENST00000636228 K7EMI3 77 aa9.52□□□□□ -0.89
CLN3-246ENST00000636228 SEC11AP67812 179 aa9.52□□□□□ -0.89
CLN3-246ENST00000636228 PAPPA-AS1Q5QFB9 102 aa9.52□□□□□ -0.89
CLN3-246ENST00000636228 TIMM17AQ99595 171 aa9.52□□□□□ -0.89
CLN3-246ENST00000636228 SMIM1B2RUZ4 78 aa9.51□□□□□ -0.89
CLN3-246ENST00000636228 RPL28P46779 137 aaKnown RBP9.51□□□□□ -0.89
CLN3-246ENST00000636228 RAB5BP61020 215 aa9.51□□□□□ -0.89
CLN3-246ENST00000636228 SCGB3A1Q96QR1 104 aa9.51□□□□□ -0.89
CLN3-246ENST00000636228 TP73-AS1Q9UF72 201 aa9.51□□□□□ -0.89
CLN3-246ENST00000636228 TYMSOSQ8TAI1 123 aa9.5□□□□□ -0.89
CLN3-246ENST00000636228 COX7B2Q8TF08 81 aa9.5□□□□□ -0.89
CLN3-246ENST00000636228 CRYGAP11844 174 aa9.49□□□□□ -0.89
CLN3-246ENST00000636228 TRGC2P03986 189 aa9.48□□□□□ -0.89
CLN3-246ENST00000636228 SPINK8P0C7L1 97 aa9.48□□□□□ -0.89
CLN3-246ENST00000636228 CXCL5P42830 114 aa9.48□□□□□ -0.89
CLN3-246ENST00000636228 ERASQ7Z444 233 aa9.48□□□□□ -0.89
CLN3-246ENST00000636228 TINCRA0A1B0GVN0 87 aa9.47□□□□□ -0.89
CLN3-246ENST00000636228 G0S2P27469 103 aa9.47□□□□□ -0.89
CLN3-246ENST00000636228 PDZD11Q5EBL8 140 aa9.47□□□□□ -0.89
CLN3-246ENST00000636228 KRTAP13-2Q52LG2 175 aa9.46□□□□□ -0.9
CLN3-246ENST00000636228 C18orf32Q8TCD1 76 aa9.46□□□□□ -0.9
CLN3-246ENST00000636228 RETNLBQ9BQ08 111 aa9.45□□□□□ -0.9
CLN3-246ENST00000636228 CST9LQ9H4G1 147 aa9.45□□□□□ -0.9
CLN3-246ENST00000636228 IGLV5-45A0A087WSX0 123 aa9.44□□□□□ -0.9
CLN3-246ENST00000636228 UBE2AP49459 152 aa9.44□□□□□ -0.9
CLN3-246ENST00000636228 IGKV2-28A0A075B6P5 120 aa9.43□□□□□ -0.9
CLN3-246ENST00000636228 LINC01546A6NGU7 62 aa9.43□□□□□ -0.9
CLN3-246ENST00000636228 IGKV2D-28P01615 120 aa9.43□□□□□ -0.9
CLN3-246ENST00000636228 KRTAP13-1Q8IUC0 172 aa9.43□□□□□ -0.9
CLN3-246ENST00000636228 NKAPP1Q8N9T2 125 aa9.43□□□□□ -0.9
CLN3-246ENST00000636228 IGLV5-37A0A075B6J1 123 aa9.42□□□□□ -0.9
CLN3-246ENST00000636228 PFN2P35080 140 aa9.41□□□□□ -0.9
CLN3-246ENST00000636228 URB1-AS1Q96HZ7 61 aa9.41□□□□□ -0.9
CLN3-246ENST00000636228 PMVKQ15126 192 aa9.4□□□□□ -0.9
CLN3-246ENST00000636228 FAT4Q6V0I7 4981 aa9.39□□□□□ -0.91
CLN3-246ENST00000636228 A0A0U1RQV1 116 aa9.39□□□□□ -0.91
CLN3-246ENST00000636228 PRLHP81277 87 aa9.39□□□□□ -0.91
CLN3-246ENST00000636228 FA2HQ7L5A8 372 aa9.39□□□□□ -0.91
CLN3-246ENST00000636228 TMEM238C9JI98 176 aa9.38□□□□□ -0.91
CLN3-246ENST00000636228 HIST1H2BKO60814 126 aa9.38□□□□□ -0.91
CLN3-246ENST00000636228 ATP5LO75964 103 aa9.38□□□□□ -0.91
CLN3-246ENST00000636228 HIST1H2BJP06899 126 aa9.38□□□□□ -0.91
CLN3-246ENST00000636228 HIST1H2BOP23527 126 aa9.38□□□□□ -0.91
CLN3-246ENST00000636228 HIST1H2BBP33778 126 aa9.38□□□□□ -0.91
CLN3-246ENST00000636228 HIST1H2BDP58876 126 aa9.38□□□□□ -0.91
CLN3-246ENST00000636228 HIST1H2BCP62807 126 aa9.38□□□□□ -0.91
CLN3-246ENST00000636228 HIST2H2BEQ16778 126 aa9.38□□□□□ -0.91
CLN3-246ENST00000636228 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.38□□□□□ -0.91
CLN3-246ENST00000636228 LINC00304Q8N9R0 145 aa9.38□□□□□ -0.91
CLN3-246ENST00000636228 HIST1H2BHQ93079 126 aa9.38□□□□□ -0.91
CLN3-246ENST00000636228 HIST1H2BNQ99877 126 aa9.38□□□□□ -0.91
CLN3-246ENST00000636228 HIST1H2BMQ99879 126 aa9.38□□□□□ -0.91
CLN3-246ENST00000636228 LINC00614P0C842 121 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms