RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 H3BS24 57 aa3.61□□□□□ -1.83
VPS13D-214ENST00000620676 UNQ6190/PRO20217Q6UXQ8 127 aa3.61□□□□□ -1.83
VPS13D-214ENST00000620676 PSMG3-AS1Q96PY0 264 aa3.61□□□□□ -1.83
VPS13D-214ENST00000620676 MSMBP08118 114 aa3.61□□□□□ -1.83
VPS13D-214ENST00000620676 CNFNQ9BYD5 112 aa3.61□□□□□ -1.83
VPS13D-214ENST00000620676 HCG22E2RYF7 251 aa3.61□□□□□ -1.83
VPS13D-214ENST00000620676 LINC01356Q8N9X3 169 aa3.61□□□□□ -1.83
VPS13D-214ENST00000620676 COL4A4P53420 1690 aaPredicted RBP3.61□□□□□ -1.83
VPS13D-214ENST00000620676 C10orf25Q5T742 122 aa3.61□□□□□ -1.83
VPS13D-214ENST00000620676 SPATA3Q8NHX4 192 aa3.61□□□□□ -1.83
VPS13D-214ENST00000620676 LYRM9A8MSI8 78 aa3.6□□□□□ -1.83
VPS13D-214ENST00000620676 STAB1Q9NY15 2570 aa3.6□□□□□ -1.83
VPS13D-214ENST00000620676 C16orf74Q96GX8 76 aa3.6□□□□□ -1.83
VPS13D-214ENST00000620676 Q96MF0 132 aa3.6□□□□□ -1.83
VPS13D-214ENST00000620676 IGLV8-61A0A075B6I0 122 aa3.6□□□□□ -1.83
VPS13D-214ENST00000620676 LINC00575Q6W349 94 aa3.6□□□□□ -1.83
VPS13D-214ENST00000620676 SMIM29Q86T20 159 aa3.59□□□□□ -1.83
VPS13D-214ENST00000620676 TRBV6-4A0A1B0GX49 114 aa3.59□□□□□ -1.83
VPS13D-214ENST00000620676 C9orf129Q5T035 196 aaKnown RBP3.59□□□□□ -1.83
VPS13D-214ENST00000620676 Q5XG85 94 aa3.59□□□□□ -1.83
VPS13D-214ENST00000620676 ZNF706Q9Y5V0 76 aaPredicted RBP3.59□□□□□ -1.83
VPS13D-214ENST00000620676 ODF3BA8MYP8 253 aa3.59□□□□□ -1.83
VPS13D-214ENST00000620676 LINC01006Q8NI28 216 aa3.59□□□□□ -1.83
VPS13D-214ENST00000620676 LINC00959A0A1B0GUT2 108 aa3.59□□□□□ -1.83
VPS13D-214ENST00000620676 CDC42SE2Q9NRR3 84 aa3.59□□□□□ -1.83
VPS13D-214ENST00000620676 IGLV4-60A0A075B6I1 120 aa3.59□□□□□ -1.84
VPS13D-214ENST00000620676 C4orf48Q5BLP8 95 aa3.59□□□□□ -1.84
VPS13D-214ENST00000620676 CASC2Q6XLA1 102 aa3.59□□□□□ -1.84
VPS13D-214ENST00000620676 AMELXQ99217 191 aa3.59□□□□□ -1.84
VPS13D-214ENST00000620676 TRBV6-8A0A0A6YYG3 113 aa3.59□□□□□ -1.84
VPS13D-214ENST00000620676 C11orf72Q8NBR9 251 aa3.59□□□□□ -1.84
VPS13D-214ENST00000620676 LRP4O75096 1905 aa3.58□□□□□ -1.84
VPS13D-214ENST00000620676 C1orf64Q8NEQ6 169 aa3.58□□□□□ -1.84
VPS13D-214ENST00000620676 DEFB135Q30KP9 77 aa3.58□□□□□ -1.84
VPS13D-214ENST00000620676 MAP6D1Q9H9H5 199 aa3.58□□□□□ -1.84
VPS13D-214ENST00000620676 SPINK1P00995 79 aa3.58□□□□□ -1.84
VPS13D-214ENST00000620676 IGF2RP11717 2491 aa3.58□□□□□ -1.84
VPS13D-214ENST00000620676 APOC4P55056 127 aa3.58□□□□□ -1.84
VPS13D-214ENST00000620676 BBC3Q96PG8 261 aaPredicted RBP3.58□□□□□ -1.84
VPS13D-214ENST00000620676 DSCAMO60469 2012 aa3.58□□□□□ -1.84
VPS13D-214ENST00000620676 ADAMTS20P59510 1910 aa3.58□□□□□ -1.84
VPS13D-214ENST00000620676 MRGPRG-AS1Q2M3A8 158 aa3.58□□□□□ -1.84
VPS13D-214ENST00000620676 GCN1Q92616 2671 aaKnown RBP3.58□□□□□ -1.84
VPS13D-214ENST00000620676 F8W735 103 aaPredicted RBP3.58□□□□□ -1.84
VPS13D-214ENST00000620676 B9D2Q9BPU9 175 aa3.58□□□□□ -1.84
VPS13D-214ENST00000620676 H3BUA1 57 aa3.57□□□□□ -1.84
VPS13D-214ENST00000620676 K7EQG2 157 aa3.57□□□□□ -1.84
VPS13D-214ENST00000620676 SPINK6Q6UWN8 80 aa3.57□□□□□ -1.84
VPS13D-214ENST00000620676 H0Y9P7 68 aa3.57□□□□□ -1.84
VPS13D-214ENST00000620676 VPREB1P12018 145 aa3.57□□□□□ -1.84
VPS13D-214ENST00000620676 TET2Q6N021 2002 aaPredicted RBP3.57□□□□□ -1.84
VPS13D-214ENST00000620676 FAM229BQ4G0N7 80 aa3.57□□□□□ -1.84
VPS13D-214ENST00000620676 OXTP01178 125 aa3.56□□□□□ -1.84
VPS13D-214ENST00000620676 KLLNB2CW77 178 aa3.56□□□□□ -1.84
VPS13D-214ENST00000620676 H7BZZ5 65 aa3.56□□□□□ -1.84
VPS13D-214ENST00000620676 LTBP2Q14767 1821 aa3.56□□□□□ -1.84
VPS13D-214ENST00000620676 IGLV9-49A0A0B4J1Y8 123 aa3.56□□□□□ -1.84
VPS13D-214ENST00000620676 WIPF1O43516 503 aa3.56□□□□□ -1.84
VPS13D-214ENST00000620676 K7EMT4 169 aa3.56□□□□□ -1.84
VPS13D-214ENST00000620676 IGFL3Q6UXB1 125 aa3.56□□□□□ -1.84
VPS13D-214ENST00000620676 KIAA0087Q14695 138 aa3.56□□□□□ -1.84
VPS13D-214ENST00000620676 TRAV22A0A0B4J277 110 aa3.55□□□□□ -1.84
VPS13D-214ENST00000620676 A6NDX4 124 aa3.55□□□□□ -1.84
VPS13D-214ENST00000620676 A0A0G2JQZ4 141 aa3.55□□□□□ -1.84
VPS13D-214ENST00000620676 A0A1W2PNN7 141 aa3.55□□□□□ -1.84
VPS13D-214ENST00000620676 CYSRT1A8MQ03 144 aa3.55□□□□□ -1.84
VPS13D-214ENST00000620676 RPL37AP61513 92 aaKnown RBP3.55□□□□□ -1.84
VPS13D-214ENST00000620676 K7ENP7 123 aa3.55□□□□□ -1.84
VPS13D-214ENST00000620676 M0R378 163 aa3.55□□□□□ -1.84
VPS13D-214ENST00000620676 RBM12B-AS1Q9P1G2 102 aa3.55□□□□□ -1.84
VPS13D-214ENST00000620676 LITAFQ99732 161 aa3.55□□□□□ -1.84
VPS13D-214ENST00000620676 C1orf137Q5JT78 98 aa3.54□□□□□ -1.84
VPS13D-214ENST00000620676 IGHV6-1A0A0B4J1U7 121 aa3.54□□□□□ -1.84
VPS13D-214ENST00000620676 LINC00315P59091 139 aa3.54□□□□□ -1.84
VPS13D-214ENST00000620676 LYPD5Q6UWN5 251 aa3.54□□□□□ -1.84
VPS13D-214ENST00000620676 CPAMD8Q8IZJ3 1885 aa3.54□□□□□ -1.84
VPS13D-214ENST00000620676 CXCL6P80162 114 aa3.54□□□□□ -1.84
VPS13D-214ENST00000620676 CD164Q04900 197 aa3.54□□□□□ -1.84
VPS13D-214ENST00000620676 KMT2BQ9UMN6 2715 aaPredicted RBP3.54□□□□□ -1.84
VPS13D-214ENST00000620676 DEFB114Q30KQ6 69 aa3.54□□□□□ -1.84
VPS13D-214ENST00000620676 SETXQ7Z333 2677 aaKnown RBP3.53□□□□□ -1.84
VPS13D-214ENST00000620676 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.53□□□□□ -1.84
VPS13D-214ENST00000620676 PRAC1Q96KF2 57 aa3.53□□□□□ -1.84
VPS13D-214ENST00000620676 PTPRBP23467 1997 aa3.53□□□□□ -1.84
VPS13D-214ENST00000620676 PIP4P1Q86T03 277 aa3.53□□□□□ -1.84
VPS13D-214ENST00000620676 SPART-AS1P0CW21 52 aa3.53□□□□□ -1.84
VPS13D-214ENST00000620676 Q6ZQT0 140 aa3.53□□□□□ -1.84
VPS13D-214ENST00000620676 KIF25-AS1Q9Y6Z4 181 aa3.53□□□□□ -1.84
VPS13D-214ENST00000620676 PIEZO2Q9H5I5 2752 aa3.52□□□□□ -1.85
VPS13D-214ENST00000620676 CD164L2Q6UWJ8 174 aa3.52□□□□□ -1.85
VPS13D-214ENST00000620676 HECTD1Q9ULT8 2610 aa3.52□□□□□ -1.85
VPS13D-214ENST00000620676 IGLV5-39A0A0G2JS06 123 aa3.52□□□□□ -1.85
VPS13D-214ENST00000620676 C4orf3Q8WVX3 66 aa3.52□□□□□ -1.85
VPS13D-214ENST00000620676 RAI1Q7Z5J4 1906 aaPredicted RBP3.52□□□□□ -1.85
VPS13D-214ENST00000620676 LIMD2Q9BT23 127 aa3.52□□□□□ -1.85
VPS13D-214ENST00000620676 ATRQ13535 2644 aa3.52□□□□□ -1.85
VPS13D-214ENST00000620676 COX8CQ7Z4L0 72 aa3.51□□□□□ -1.85
VPS13D-214ENST00000620676 CENPFP49454 3210 aa3.51□□□□□ -1.85
VPS13D-214ENST00000620676 A0A087WSZ3 146 aa3.51□□□□□ -1.85
VPS13D-214ENST00000620676 EP400Q96L91 3159 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms