RNA–Protein interactions for RNA: ENST00000619655.4

MMP28-207, Transcript of matrix metallopeptidase 28, humanhuman

TSL 2

Gene MMP28, Length 2,336 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-207ENST00000619655 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.79□□□□□ -0.2
MMP28-207ENST00000619655 CHCHD10Q8WYQ3 142 aaPredicted RBP13.79□□□□□ -0.2
MMP28-207ENST00000619655 IGHV3-33P01772 117 aa13.78□□□□□ -0.2
MMP28-207ENST00000619655 HERV-K104P63124 156 aa13.78□□□□□ -0.2
MMP28-207ENST00000619655 MTURNQ8N3F0 131 aa13.78□□□□□ -0.2
MMP28-207ENST00000619655 KLK12Q9UKR0 248 aa13.78□□□□□ -0.2
MMP28-207ENST00000619655 A0A0B4J2C4 111 aa13.77□□□□□ -0.21
MMP28-207ENST00000619655 Q1RN00 199 aa13.76□□□□□ -0.21
MMP28-207ENST00000619655 C6orf226Q5I0X4 101 aa13.76□□□□□ -0.21
MMP28-207ENST00000619655 LINC00308Q8TCZ7 52 aa13.76□□□□□ -0.21
MMP28-207ENST00000619655 H3BNG1 76 aa13.75□□□□□ -0.21
MMP28-207ENST00000619655 WFDC10BQ8IUB3 73 aa13.75□□□□□ -0.21
MMP28-207ENST00000619655 IFITM1P13164 125 aa13.75□□□□□ -0.21
MMP28-207ENST00000619655 CD164L2Q6UWJ8 174 aa13.75□□□□□ -0.21
MMP28-207ENST00000619655 ERG28Q9UKR5 140 aa13.75□□□□□ -0.21
MMP28-207ENST00000619655 COX7A2LO14548 114 aa13.74□□□□□ -0.21
MMP28-207ENST00000619655 TM2D3Q9BRN9 247 aa13.74□□□□□ -0.21
MMP28-207ENST00000619655 MALP21145 153 aa13.73□□□□□ -0.21
MMP28-207ENST00000619655 PSMB2P49721 201 aa13.73□□□□□ -0.21
MMP28-207ENST00000619655 FOXI1Q12951 378 aa13.73□□□□□ -0.21
MMP28-207ENST00000619655 LYRM7Q5U5X0 104 aa13.73□□□□□ -0.21
MMP28-207ENST00000619655 SOSTDC1Q6X4U4 206 aa13.73□□□□□ -0.21
MMP28-207ENST00000619655 SCGB1C2P0DMR2 95 aa13.72□□□□□ -0.21
MMP28-207ENST00000619655 PFN2P35080 140 aa13.72□□□□□ -0.21
MMP28-207ENST00000619655 C2orf82Q6UX34 121 aa13.72□□□□□ -0.21
MMP28-207ENST00000619655 HUWE1Q7Z6Z7 4374 aaKnown RBP13.71□□□□□ -0.21
MMP28-207ENST00000619655 LINC00158P58513 81 aa13.71□□□□□ -0.21
MMP28-207ENST00000619655 ESRGQ1W209 222 aa13.71□□□□□ -0.21
MMP28-207ENST00000619655 SMCPP49901 116 aaPredicted RBP13.7□□□□□ -0.22
MMP28-207ENST00000619655 MIR7-3HGQ8N6C7 128 aa13.7□□□□□ -0.22
MMP28-207ENST00000619655 CRPP02741 224 aa13.69□□□□□ -0.22
MMP28-207ENST00000619655 CKS1BP61024 79 aa13.69□□□□□ -0.22
MMP28-207ENST00000619655 ENHOQ6UWT2 76 aa13.69□□□□□ -0.22
MMP28-207ENST00000619655 UBE2WQ96B02 151 aa13.69□□□□□ -0.22
MMP28-207ENST00000619655 TRBV20-1A0A075B6N2 111 aa13.69□□□□□ -0.22
MMP28-207ENST00000619655 TCL1BO95988 128 aa13.69□□□□□ -0.22
MMP28-207ENST00000619655 Q8IZM0 81 aa13.69□□□□□ -0.22
MMP28-207ENST00000619655 PRR34Q9NV39 138 aa13.68□□□□□ -0.22
MMP28-207ENST00000619655 COPS9Q8WXC6 57 aa13.67□□□□□ -0.22
MMP28-207ENST00000619655 RPL13AP40429 203 aaKnown RBP13.67□□□□□ -0.22
MMP28-207ENST00000619655 CFAP161Q6P656 301 aa13.66□□□□□ -0.22
MMP28-207ENST00000619655 COL7A1Q02388 2944 aa13.66□□□□□ -0.22
MMP28-207ENST00000619655 CDIP1Q9H305 208 aa13.65□□□□□ -0.22
MMP28-207ENST00000619655 TRAV10A0A0B4J240 114 aa13.64□□□□□ -0.23
MMP28-207ENST00000619655 IBA57-AS1B1ANH7 110 aa13.64□□□□□ -0.23
MMP28-207ENST00000619655 LINC01561Q8N1V8 128 aa13.64□□□□□ -0.23
MMP28-207ENST00000619655 PPDPFLQ8WWR9 84 aa13.64□□□□□ -0.23
MMP28-207ENST00000619655 TRIAP1O43715 76 aa13.63□□□□□ -0.23
MMP28-207ENST00000619655 KIAA0087Q14695 138 aa13.63□□□□□ -0.23
MMP28-207ENST00000619655 LINC00526Q96FQ7 95 aa13.63□□□□□ -0.23
MMP28-207ENST00000619655 TEN1Q86WV5 123 aa13.62□□□□□ -0.23
MMP28-207ENST00000619655 C6orf223Q8N319 242 aa13.6□□□□□ -0.23
MMP28-207ENST00000619655 SND1-IT1Q9HBX3 110 aa13.6□□□□□ -0.23
MMP28-207ENST00000619655 SPAG11BQ08648 103 aa13.59□□□□□ -0.23
MMP28-207ENST00000619655 C9orf116Q5BN46 136 aaPredicted RBP13.59□□□□□ -0.23
MMP28-207ENST00000619655 TRBV30A0A0K0K1B3 111 aa13.58□□□□□ -0.23
MMP28-207ENST00000619655 CCL18P55774 89 aa13.58□□□□□ -0.23
MMP28-207ENST00000619655 TRAV8-4A0A0B4J246 113 aa13.58□□□□□ -0.24
MMP28-207ENST00000619655 CARD19Q96LW7 228 aa13.58□□□□□ -0.24
MMP28-207ENST00000619655 MT-ATP8P03928 68 aa13.57□□□□□ -0.24
MMP28-207ENST00000619655 CXCL5P42830 114 aa13.56□□□□□ -0.24
MMP28-207ENST00000619655 STAB2Q8WWQ8 2551 aa13.56□□□□□ -0.24
MMP28-207ENST00000619655 XGP55808 180 aa13.56□□□□□ -0.24
MMP28-207ENST00000619655 C15orf53Q8NAA6 179 aa13.56□□□□□ -0.24
MMP28-207ENST00000619655 KLK5Q9Y337 293 aaPredicted RBP13.56□□□□□ -0.24
MMP28-207ENST00000619655 COX6CP09669 75 aa13.55□□□□□ -0.24
MMP28-207ENST00000619655 LINC01556Q5JQF7 62 aa13.55□□□□□ -0.24
MMP28-207ENST00000619655 C10orf25Q5T742 122 aa13.55□□□□□ -0.24
MMP28-207ENST00000619655 UNQ6190/PRO20217Q6UXQ8 127 aa13.55□□□□□ -0.24
MMP28-207ENST00000619655 IGKV2-28A0A075B6P5 120 aa13.53□□□□□ -0.24
MMP28-207ENST00000619655 IGKV2D-28P01615 120 aa13.53□□□□□ -0.24
MMP28-207ENST00000619655 CLEC2BQ92478 149 aa13.53□□□□□ -0.24
MMP28-207ENST00000619655 SLC25A20O43772 301 aa13.53□□□□□ -0.24
MMP28-207ENST00000619655 LINC00337Q8N6G1 96 aa13.53□□□□□ -0.24
MMP28-207ENST00000619655 LINC00588Q9Y4M8 146 aa13.53□□□□□ -0.24
MMP28-207ENST00000619655 C9JAW5 83 aa13.52□□□□□ -0.24
MMP28-207ENST00000619655 ATXN8Q156A1 80 aa13.52□□□□□ -0.24
MMP28-207ENST00000619655 Q9HAA7 133 aa13.52□□□□□ -0.24
MMP28-207ENST00000619655 LYSTQ99698 3801 aa13.52□□□□□ -0.25
MMP28-207ENST00000619655 M0QXV9 152 aa13.52□□□□□ -0.25
MMP28-207ENST00000619655 ANKRD29Q8N6D5 301 aa13.52□□□□□ -0.25
MMP28-207ENST00000619655 PPDPFQ9H3Y8 114 aa13.52□□□□□ -0.25
MMP28-207ENST00000619655 DNAH9Q9NYC9 4486 aa13.52□□□□□ -0.25
MMP28-207ENST00000619655 IGKV2D-24A0A075B6R9 120 aa13.51□□□□□ -0.25
MMP28-207ENST00000619655 HIGD2BQ4VC39 106 aa13.51□□□□□ -0.25
MMP28-207ENST00000619655 C1orf43Q9BWL3 253 aa13.51□□□□□ -0.25
MMP28-207ENST00000619655 TRAV13-2A0A0B4J235 113 aa13.5□□□□□ -0.25
MMP28-207ENST00000619655 COX17Q14061 63 aa13.49□□□□□ -0.25
MMP28-207ENST00000619655 KRTAP26-1Q6PEX3 210 aa13.48□□□□□ -0.25
MMP28-207ENST00000619655 DNAH10OSP0CZ25 163 aa13.48□□□□□ -0.25
MMP28-207ENST00000619655 LINC01620Q4KN68 170 aa13.47□□□□□ -0.25
MMP28-207ENST00000619655 OR13C6PQ8NH95 151 aa13.47□□□□□ -0.25
MMP28-207ENST00000619655 ZNF561-AS1K7EIQ3 104 aa13.47□□□□□ -0.25
MMP28-207ENST00000619655 SVIPQ8NHG7 77 aa13.46□□□□□ -0.25
MMP28-207ENST00000619655 B9D2Q9BPU9 175 aa13.46□□□□□ -0.25
MMP28-207ENST00000619655 PRR3P79522 188 aaKnown RBP13.46□□□□□ -0.26
MMP28-207ENST00000619655 NTN5Q8WTR8 489 aaPredicted RBP13.45□□□□□ -0.26
MMP28-207ENST00000619655 LINC01600Q96MT4 127 aa13.44□□□□□ -0.26
MMP28-207ENST00000619655 C15orf56Q8N910 161 aa13.43□□□□□ -0.26
MMP28-207ENST00000619655 CAMK2N2Q96S95 79 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms