RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 IGKV2-29A2NJV5 120 aaPredicted RBP7.27□□□□□ -1.25
VPS39-214ENST00000614932 LINC01356Q8N9X3 169 aa7.27□□□□□ -1.25
VPS39-214ENST00000614932 CDKN2A-AS1Q9UH64 79 aa7.27□□□□□ -1.25
VPS39-214ENST00000614932 TM2D3Q9BRN9 247 aa7.27□□□□□ -1.25
VPS39-214ENST00000614932 NF1P21359 2839 aa7.26□□□□□ -1.25
VPS39-214ENST00000614932 Q9UF83 564 aa7.26□□□□□ -1.25
VPS39-214ENST00000614932 C11orf72Q8NBR9 251 aa7.26□□□□□ -1.25
VPS39-214ENST00000614932 SMIM11BQ8TCY0 68 aa7.26□□□□□ -1.25
VPS39-214ENST00000614932 DYNLRB2Q8TF09 96 aa7.26□□□□□ -1.25
VPS39-214ENST00000614932 CHD6Q8TD26 2715 aa7.25□□□□□ -1.25
VPS39-214ENST00000614932 TENM4Q6N022 2769 aa7.25□□□□□ -1.25
VPS39-214ENST00000614932 C11orf68Q9H3H3 251 aaKnown RBP7.25□□□□□ -1.25
VPS39-214ENST00000614932 ACANP16112 2415 aa7.25□□□□□ -1.25
VPS39-214ENST00000614932 NDUFA4O00483 81 aa7.25□□□□□ -1.25
VPS39-214ENST00000614932 SLPIP03973 132 aa7.25□□□□□ -1.25
VPS39-214ENST00000614932 LINC00337Q8N6G1 96 aa7.25□□□□□ -1.25
VPS39-214ENST00000614932 DEFB136Q30KP8 78 aa7.24□□□□□ -1.25
VPS39-214ENST00000614932 C18orf65Q6ZTR6 163 aa7.24□□□□□ -1.25
VPS39-214ENST00000614932 IGLV5-45A0A087WSX0 123 aa7.24□□□□□ -1.25
VPS39-214ENST00000614932 Q1T7F1 81 aa7.24□□□□□ -1.25
VPS39-214ENST00000614932 TMEM254Q8TBM7 123 aa7.24□□□□□ -1.25
VPS39-214ENST00000614932 A0A096LNT2 108 aa7.23□□□□□ -1.25
VPS39-214ENST00000614932 IGLV5-39A0A0G2JS06 123 aa7.23□□□□□ -1.25
VPS39-214ENST00000614932 IGLV1-40P01703 118 aa7.23□□□□□ -1.25
VPS39-214ENST00000614932 RPL36AP83881 106 aaKnown RBP7.23□□□□□ -1.25
VPS39-214ENST00000614932 KLK9Q2XQG4 91 aa7.23□□□□□ -1.25
VPS39-214ENST00000614932 RPL36ALQ969Q0 106 aaKnown RBP7.23□□□□□ -1.25
VPS39-214ENST00000614932 USMG5Q96IX5 58 aa7.23□□□□□ -1.25
VPS39-214ENST00000614932 KLK9Q9UKQ9 250 aa7.23□□□□□ -1.25
VPS39-214ENST00000614932 FUSP35637 526 aaKnown RBP eCLIP7.23□□□□□ -1.25
VPS39-214ENST00000614932 ITPR3Q14573 2671 aa7.23□□□□□ -1.25
VPS39-214ENST00000614932 IGHV4-31P0DP07 118 aa7.23□□□□□ -1.25
VPS39-214ENST00000614932 KHDC1LQ5JSQ8 128 aa7.23□□□□□ -1.25
VPS39-214ENST00000614932 KTN1-AS1Q86SY8 53 aa7.23□□□□□ -1.25
VPS39-214ENST00000614932 C11orf44Q8N8P7 122 aa7.23□□□□□ -1.25
VPS39-214ENST00000614932 LINC01547P58512 204 aaPredicted RBP7.22□□□□□ -1.25
VPS39-214ENST00000614932 Q6ZTC4 211 aa7.22□□□□□ -1.25
VPS39-214ENST00000614932 C11orf45Q8TAV5 145 aa7.22□□□□□ -1.25
VPS39-214ENST00000614932 WNK1Q9H4A3 2382 aa7.22□□□□□ -1.25
VPS39-214ENST00000614932 IGHV1OR15-1A0A075B7D0 117 aa7.22□□□□□ -1.25
VPS39-214ENST00000614932 ERC2-IT1O76042 136 aa7.22□□□□□ -1.25
VPS39-214ENST00000614932 DSCR9P59020 149 aa7.22□□□□□ -1.25
VPS39-214ENST00000614932 FLNAP21333 2647 aaKnown RBP7.22□□□□□ -1.25
VPS39-214ENST00000614932 IGKV2-28A0A075B6P5 120 aa7.21□□□□□ -1.25
VPS39-214ENST00000614932 IGKV2D-28P01615 120 aa7.21□□□□□ -1.25
VPS39-214ENST00000614932 MTORP42345 2549 aa7.21□□□□□ -1.26
VPS39-214ENST00000614932 NREPQ16612 68 aa7.2□□□□□ -1.26
VPS39-214ENST00000614932 DEFB113Q30KQ7 82 aa7.2□□□□□ -1.26
VPS39-214ENST00000614932 Q8N3U1 123 aa7.2□□□□□ -1.26
VPS39-214ENST00000614932 PRYO14603 147 aa7.2□□□□□ -1.26
VPS39-214ENST00000614932 HAMPP81172 84 aa7.2□□□□□ -1.26
VPS39-214ENST00000614932 Q6ZTI0 123 aa7.2□□□□□ -1.26
VPS39-214ENST00000614932 UBE2E2Q96LR5 201 aa7.2□□□□□ -1.26
VPS39-214ENST00000614932 SND1-IT1Q9HBX3 110 aa7.2□□□□□ -1.26
VPS39-214ENST00000614932 CR1P17927 2039 aa7.2□□□□□ -1.26
VPS39-214ENST00000614932 AKAP9Q99996 3911 aa7.2□□□□□ -1.26
VPS39-214ENST00000614932 HTN1P15515 57 aa7.19□□□□□ -1.26
VPS39-214ENST00000614932 Q6ZRP5 223 aa7.19□□□□□ -1.26
VPS39-214ENST00000614932 NIPBLQ6KC79 2804 aaeCLIP7.19□□□□□ -1.26
VPS39-214ENST00000614932 IGHV3-38A0A0C4DH36 116 aa7.19□□□□□ -1.26
VPS39-214ENST00000614932 H3BUA1 57 aa7.19□□□□□ -1.26
VPS39-214ENST00000614932 SLURP1P55000 103 aa7.19□□□□□ -1.26
VPS39-214ENST00000614932 APOC4P55056 127 aa7.19□□□□□ -1.26
VPS39-214ENST00000614932 COX6A2Q02221 97 aa7.19□□□□□ -1.26
VPS39-214ENST00000614932 NOTCH3Q9UM47 2321 aa7.18□□□□□ -1.26
VPS39-214ENST00000614932 ITPR2Q14571 2701 aa7.18□□□□□ -1.26
VPS39-214ENST00000614932 TMEM256-PLSCR3K7ERE1 68 aa7.18□□□□□ -1.26
VPS39-214ENST00000614932 CXCL6P80162 114 aa7.18□□□□□ -1.26
VPS39-214ENST00000614932 ZNF702PQ9H963 129 aa7.18□□□□□ -1.26
VPS39-214ENST00000614932 hDV103S1A0JD37 113 aa7.18□□□□□ -1.26
VPS39-214ENST00000614932 PRM2P04554 102 aa7.18□□□□□ -1.26
VPS39-214ENST00000614932 LINC00167Q96N53 147 aa7.18□□□□□ -1.26
VPS39-214ENST00000614932 SMIM1B2RUZ4 78 aa7.17□□□□□ -1.26
VPS39-214ENST00000614932 Q6YL49 198 aa7.17□□□□□ -1.26
VPS39-214ENST00000614932 CHCHD7Q9BUK0 85 aa7.17□□□□□ -1.26
VPS39-214ENST00000614932 LINC00588Q9Y4M8 146 aa7.17□□□□□ -1.26
VPS39-214ENST00000614932 NOTCH2Q04721 2471 aa7.17□□□□□ -1.26
VPS39-214ENST00000614932 KLLNB2CW77 178 aa7.17□□□□□ -1.26
VPS39-214ENST00000614932 SPINK13Q1W4C9 94 aa7.17□□□□□ -1.26
VPS39-214ENST00000614932 HELZ2Q9BYK8 2649 aaKnown RBP7.17□□□□□ -1.26
VPS39-214ENST00000614932 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.16□□□□□ -1.26
VPS39-214ENST00000614932 IGHV3-16A0A0C4DH30 117 aa7.16□□□□□ -1.26
VPS39-214ENST00000614932 PSPHP1O15172 72 aa7.16□□□□□ -1.26
VPS39-214ENST00000614932 Q6ZVQ6 151 aa7.16□□□□□ -1.26
VPS39-214ENST00000614932 M0R378 163 aa7.16□□□□□ -1.26
VPS39-214ENST00000614932 LYRM9A8MSI8 78 aa7.15□□□□□ -1.26
VPS39-214ENST00000614932 UBE2BP63146 152 aa7.15□□□□□ -1.26
VPS39-214ENST00000614932 LINC00242Q5T6M2 205 aa7.14□□□□□ -1.27
VPS39-214ENST00000614932 DGAT2L7PQ6IED9 249 aa7.14□□□□□ -1.27
VPS39-214ENST00000614932 LRCOL1A6NCL2 159 aa7.14□□□□□ -1.27
VPS39-214ENST00000614932 Q6ZQT0 140 aa7.14□□□□□ -1.27
VPS39-214ENST00000614932 KRTAP1-3Q8IUG1 177 aa7.14□□□□□ -1.27
VPS39-214ENST00000614932 LINC00467Q9BRT7 94 aa7.14□□□□□ -1.27
VPS39-214ENST00000614932 TRAV22A0A0B4J277 110 aa7.14□□□□□ -1.27
VPS39-214ENST00000614932 TRBV10-1A0A0K0K1A3 114 aa7.14□□□□□ -1.27
VPS39-214ENST00000614932 BPY2O14599 106 aa7.14□□□□□ -1.27
VPS39-214ENST00000614932 HECTD1Q9ULT8 2610 aa7.13□□□□□ -1.27
VPS39-214ENST00000614932 IGHV3OR16-12A0A075B7B8 117 aa7.13□□□□□ -1.27
VPS39-214ENST00000614932 K7EMT4 169 aa7.13□□□□□ -1.27
VPS39-214ENST00000614932 NDUFS5O43920 106 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 184.7 ms