RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 G0S2P27469 103 aa4.58□□□□□ -1.68
CUX1-219ENST00000606749 RAB14P61106 215 aa4.58□□□□□ -1.68
CUX1-219ENST00000606749 SEC11AP67812 179 aa4.58□□□□□ -1.68
CUX1-219ENST00000606749 Q8IZM0 81 aa4.58□□□□□ -1.68
CUX1-219ENST00000606749 LINC00469Q8N7U9 141 aa4.58□□□□□ -1.68
CUX1-219ENST00000606749 ALKBH7Q9BT30 221 aaPredicted RBP4.58□□□□□ -1.68
CUX1-219ENST00000606749 CDKN2A-AS1Q9UH64 79 aa4.58□□□□□ -1.68
CUX1-219ENST00000606749 C22orf24Q9Y442 160 aa4.58□□□□□ -1.68
CUX1-219ENST00000606749 HERVK_113P63121 156 aa4.57□□□□□ -1.68
CUX1-219ENST00000606749 KIAA1644Q3SXP7 199 aa4.57□□□□□ -1.68
CUX1-219ENST00000606749 PAPPA-AS1Q5QFB9 102 aa4.57□□□□□ -1.68
CUX1-219ENST00000606749 TOMM6Q96B49 74 aa4.57□□□□□ -1.68
CUX1-219ENST00000606749 TIMM17AQ99595 171 aa4.57□□□□□ -1.68
CUX1-219ENST00000606749 GEMIN7Q9H840 131 aaKnown RBP4.57□□□□□ -1.68
CUX1-219ENST00000606749 RNF213Q63HN8 5207 aa4.57□□□□□ -1.68
CUX1-219ENST00000606749 F8VRH5 84 aa4.56□□□□□ -1.68
CUX1-219ENST00000606749 ZNF861PO60384 105 aa4.56□□□□□ -1.68
CUX1-219ENST00000606749 LCE2AQ5TA79 106 aaPredicted RBP4.56□□□□□ -1.68
CUX1-219ENST00000606749 ERASQ7Z444 233 aa4.56□□□□□ -1.68
CUX1-219ENST00000606749 SCGB3A1Q96QR1 104 aa4.56□□□□□ -1.68
CUX1-219ENST00000606749 XAGE1AQ9HD64 81 aa4.56□□□□□ -1.68
CUX1-219ENST00000606749 NUPR1O60356 82 aa4.55□□□□□ -1.68
CUX1-219ENST00000606749 ADCYAP1P18509 176 aa4.55□□□□□ -1.68
CUX1-219ENST00000606749 LBHQ53QV2 105 aaPredicted RBP4.55□□□□□ -1.68
CUX1-219ENST00000606749 TP73-AS1Q9UF72 201 aa4.55□□□□□ -1.68
CUX1-219ENST00000606749 CARHSP1Q9Y2V2 147 aaKnown RBP4.55□□□□□ -1.68
CUX1-219ENST00000606749 TRAV9-1A0A075B6T8 112 aa4.54□□□□□ -1.68
CUX1-219ENST00000606749 TINCRA0A1B0GVN0 87 aa4.54□□□□□ -1.68
CUX1-219ENST00000606749 TMEM218A2RU14 115 aa4.54□□□□□ -1.68
CUX1-219ENST00000606749 LINC01546A6NGU7 62 aa4.54□□□□□ -1.68
CUX1-219ENST00000606749 SMIM1B2RUZ4 78 aa4.54□□□□□ -1.68
CUX1-219ENST00000606749 RPL13AP40429 203 aaKnown RBP4.54□□□□□ -1.68
CUX1-219ENST00000606749 CXCL5P42830 114 aa4.54□□□□□ -1.68
CUX1-219ENST00000606749 PDZD11Q5EBL8 140 aa4.54□□□□□ -1.68
CUX1-219ENST00000606749 CLLU1Q5K131 121 aa4.54□□□□□ -1.68
CUX1-219ENST00000606749 LCE2CQ5TA81 110 aa4.54□□□□□ -1.68
CUX1-219ENST00000606749 MRPL55Q7Z7F7 128 aaKnown RBP4.54□□□□□ -1.68
CUX1-219ENST00000606749 CST9LQ9H4G1 147 aa4.54□□□□□ -1.68
CUX1-219ENST00000606749 IGLV5-45A0A087WSX0 123 aa4.53□□□□□ -1.68
CUX1-219ENST00000606749 LINC01549A6NIU2 74 aa4.53□□□□□ -1.68
CUX1-219ENST00000606749 UQCC3Q6UW78 93 aa4.53□□□□□ -1.68
CUX1-219ENST00000606749 COX7B2Q8TF08 81 aa4.53□□□□□ -1.68
CUX1-219ENST00000606749 GNB1LQ9BYB4 327 aa4.53□□□□□ -1.68
CUX1-219ENST00000606749 RPL37AP8A6NKH3 93 aa4.52□□□□□ -1.69
CUX1-219ENST00000606749 BCE1O60756 84 aa4.52□□□□□ -1.69
CUX1-219ENST00000606749 PRR4Q16378 134 aa4.52□□□□□ -1.69
CUX1-219ENST00000606749 LINC00167Q96N53 147 aa4.52□□□□□ -1.69
CUX1-219ENST00000606749 LPAP08519 4548 aa4.52□□□□□ -1.69
CUX1-219ENST00000606749 SPINK8P0C7L1 97 aa4.51□□□□□ -1.69
CUX1-219ENST00000606749 S100PP25815 95 aa4.51□□□□□ -1.69
CUX1-219ENST00000606749 RPL28P46779 137 aaKnown RBP4.51□□□□□ -1.69
CUX1-219ENST00000606749 RAB5BP61020 215 aa4.51□□□□□ -1.69
CUX1-219ENST00000606749 PMVKQ15126 192 aa4.51□□□□□ -1.69
CUX1-219ENST00000606749 SEC11CQ9BY50 192 aa4.51□□□□□ -1.69
CUX1-219ENST00000606749 MRPL18Q9H0U6 180 aaKnown RBP4.51□□□□□ -1.69
CUX1-219ENST00000606749 IGLV5-37A0A075B6J1 123 aa4.5□□□□□ -1.69
CUX1-219ENST00000606749 A0A087X002 238 aa4.5□□□□□ -1.69
CUX1-219ENST00000606749 GAGE10A6NGK3 116 aa4.5□□□□□ -1.69
CUX1-219ENST00000606749 TSPAN13O95857 204 aa4.5□□□□□ -1.69
CUX1-219ENST00000606749 IFITM2Q01629 132 aa4.5□□□□□ -1.69
CUX1-219ENST00000606749 COX19Q49B96 90 aa4.5□□□□□ -1.69
CUX1-219ENST00000606749 FA2HQ7L5A8 372 aa4.5□□□□□ -1.69
CUX1-219ENST00000606749 CRYGAP11844 174 aa4.49□□□□□ -1.69
CUX1-219ENST00000606749 FABP9Q0Z7S8 132 aa4.49□□□□□ -1.69
CUX1-219ENST00000606749 SMCO4Q9NRQ5 59 aa4.49□□□□□ -1.69
CUX1-219ENST00000606749 ANAPC11Q9NYG5 84 aa4.49□□□□□ -1.69
CUX1-219ENST00000606749 IGLV5-39A0A0G2JS06 123 aa4.48□□□□□ -1.69
CUX1-219ENST00000606749 H3BRM9 83 aa4.48□□□□□ -1.69
CUX1-219ENST00000606749 ATP5LO75964 103 aa4.48□□□□□ -1.69
CUX1-219ENST00000606749 IGLC3P0DOY3 106 aa4.48□□□□□ -1.69
CUX1-219ENST00000606749 KRTAP13-1Q8IUC0 172 aa4.48□□□□□ -1.69
CUX1-219ENST00000606749 NKAPP1Q8N9T2 125 aa4.48□□□□□ -1.69
CUX1-219ENST00000606749 TYMSOSQ8TAI1 123 aa4.48□□□□□ -1.69
CUX1-219ENST00000606749 A0A096LNJ9 63 aa4.47□□□□□ -1.69
CUX1-219ENST00000606749 SCO1O75880 301 aa4.47□□□□□ -1.69
CUX1-219ENST00000606749 LINC00614P0C842 121 aa4.47□□□□□ -1.69
CUX1-219ENST00000606749 PFN2P35080 140 aa4.47□□□□□ -1.69
CUX1-219ENST00000606749 UBE2AP49459 152 aa4.47□□□□□ -1.69
CUX1-219ENST00000606749 NDUFA6P56556 154 aa4.47□□□□□ -1.69
CUX1-219ENST00000606749 C10orf91Q5T1B1 145 aa4.47□□□□□ -1.69
CUX1-219ENST00000606749 RPS10P5Q9NQ39 176 aa4.47□□□□□ -1.69
CUX1-219ENST00000606749 IGKV2-28A0A075B6P5 120 aa4.46□□□□□ -1.7
CUX1-219ENST00000606749 IGKV2D-28P01615 120 aa4.46□□□□□ -1.7
CUX1-219ENST00000606749 ZNF22P17026 224 aaPredicted RBP4.46□□□□□ -1.7
CUX1-219ENST00000606749 KRTAP13-2Q52LG2 175 aa4.46□□□□□ -1.7
CUX1-219ENST00000606749 COMMD7Q86VX2 200 aa4.46□□□□□ -1.7
CUX1-219ENST00000606749 URB1-AS1Q96HZ7 61 aa4.46□□□□□ -1.7
CUX1-219ENST00000606749 SND1-IT1Q9HBX3 110 aa4.46□□□□□ -1.7
CUX1-219ENST00000606749 VPREB1P12018 145 aa4.45□□□□□ -1.7
CUX1-219ENST00000606749 COX17Q14061 63 aa4.45□□□□□ -1.7
CUX1-219ENST00000606749 RHEBQ15382 184 aa4.45□□□□□ -1.7
CUX1-219ENST00000606749 PMCHL1Q16048 86 aa4.45□□□□□ -1.7
CUX1-219ENST00000606749 C18orf32Q8TCD1 76 aa4.45□□□□□ -1.7
CUX1-219ENST00000606749 ZNF625Q96I27 306 aaPredicted RBP4.45□□□□□ -1.7
CUX1-219ENST00000606749 ERG28Q9UKR5 140 aa4.45□□□□□ -1.7
CUX1-219ENST00000606749 TRAPPC1Q9Y5R8 145 aa4.45□□□□□ -1.7
CUX1-219ENST00000606749 C11orf86A6NJI1 115 aa4.44□□□□□ -1.7
CUX1-219ENST00000606749 TMEM238C9JI98 176 aa4.44□□□□□ -1.7
CUX1-219ENST00000606749 HBDP02042 147 aa4.44□□□□□ -1.7
CUX1-219ENST00000606749 RPL24P83731 157 aaKnown RBP4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms