RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 HERVK_113P63121 156 aa9.34□□□□□ -0.91
SHKBP1-228ENST00000602239 CTDSP1Q9GZU7 261 aa9.34□□□□□ -0.91
SHKBP1-228ENST00000602239 NXT2Q9NPJ8 142 aaKnown RBP9.34□□□□□ -0.91
SHKBP1-228ENST00000602239 CARHSP1Q9Y2V2 147 aaKnown RBP9.34□□□□□ -0.91
SHKBP1-228ENST00000602239 F8VRH5 84 aa9.33□□□□□ -0.92
SHKBP1-228ENST00000602239 KIAA1644Q3SXP7 199 aa9.33□□□□□ -0.92
SHKBP1-228ENST00000602239 TOMM6Q96B49 74 aa9.33□□□□□ -0.92
SHKBP1-228ENST00000602239 GEMIN7Q9H840 131 aaKnown RBP9.33□□□□□ -0.92
SHKBP1-228ENST00000602239 MUC2Q02817 5179 aa9.32□□□□□ -0.92
SHKBP1-228ENST00000602239 NUPR1O60356 82 aa9.32□□□□□ -0.92
SHKBP1-228ENST00000602239 TSPAN13O95857 204 aa9.32□□□□□ -0.92
SHKBP1-228ENST00000602239 LBHQ53QV2 105 aaPredicted RBP9.32□□□□□ -0.92
SHKBP1-228ENST00000602239 MRPL55Q7Z7F7 128 aaKnown RBP9.32□□□□□ -0.92
SHKBP1-228ENST00000602239 A0A087X002 238 aa9.31□□□□□ -0.92
SHKBP1-228ENST00000602239 ADCYAP1P18509 176 aa9.31□□□□□ -0.92
SHKBP1-228ENST00000602239 SEC11AP67812 179 aa9.31□□□□□ -0.92
SHKBP1-228ENST00000602239 TIMM17AQ99595 171 aa9.31□□□□□ -0.92
SHKBP1-228ENST00000602239 PAPPA-AS1Q5QFB9 102 aa9.3□□□□□ -0.92
SHKBP1-228ENST00000602239 TP73-AS1Q9UF72 201 aa9.3□□□□□ -0.92
SHKBP1-228ENST00000602239 RPL37AP8A6NKH3 93 aa9.29□□□□□ -0.92
SHKBP1-228ENST00000602239 SMIM1B2RUZ4 78 aa9.29□□□□□ -0.92
SHKBP1-228ENST00000602239 ERASQ7Z444 233 aa9.29□□□□□ -0.92
SHKBP1-228ENST00000602239 LINC00167Q96N53 147 aa9.29□□□□□ -0.92
SHKBP1-228ENST00000602239 SCGB3A1Q96QR1 104 aa9.29□□□□□ -0.92
SHKBP1-228ENST00000602239 BCE1O60756 84 aa9.28□□□□□ -0.92
SHKBP1-228ENST00000602239 G0S2P27469 103 aa9.28□□□□□ -0.92
SHKBP1-228ENST00000602239 ANAPC11Q9NYG5 84 aa9.28□□□□□ -0.92
SHKBP1-228ENST00000602239 GAGE10A6NGK3 116 aa9.27□□□□□ -0.93
SHKBP1-228ENST00000602239 RPL28P46779 137 aaKnown RBP9.27□□□□□ -0.93
SHKBP1-228ENST00000602239 COX7B2Q8TF08 81 aa9.27□□□□□ -0.93
SHKBP1-228ENST00000602239 TINCRA0A1B0GVN0 87 aa9.26□□□□□ -0.93
SHKBP1-228ENST00000602239 CXCL5P42830 114 aa9.26□□□□□ -0.93
SHKBP1-228ENST00000602239 RAB5BP61020 215 aa9.26□□□□□ -0.93
SHKBP1-228ENST00000602239 PDZD11Q5EBL8 140 aa9.26□□□□□ -0.93
SHKBP1-228ENST00000602239 IGLV5-45A0A087WSX0 123 aa9.25□□□□□ -0.93
SHKBP1-228ENST00000602239 SPINK8P0C7L1 97 aa9.25□□□□□ -0.93
SHKBP1-228ENST00000602239 RAB14P61106 215 aa9.25□□□□□ -0.93
SHKBP1-228ENST00000602239 CST9LQ9H4G1 147 aa9.25□□□□□ -0.93
SHKBP1-228ENST00000602239 CRYGAP11844 174 aa9.24□□□□□ -0.93
SHKBP1-228ENST00000602239 TYMSOSQ8TAI1 123 aa9.24□□□□□ -0.93
SHKBP1-228ENST00000602239 LINC01546A6NGU7 62 aa9.23□□□□□ -0.93
SHKBP1-228ENST00000602239 SCO1O75880 301 aa9.23□□□□□ -0.93
SHKBP1-228ENST00000602239 KRTAP13-2Q52LG2 175 aa9.22□□□□□ -0.93
SHKBP1-228ENST00000602239 KRTAP13-1Q8IUC0 172 aa9.22□□□□□ -0.93
SHKBP1-228ENST00000602239 IGLV5-37A0A075B6J1 123 aa9.21□□□□□ -0.94
SHKBP1-228ENST00000602239 CLLU1Q5K131 121 aa9.2□□□□□ -0.94
SHKBP1-228ENST00000602239 TRAV9-1A0A075B6T8 112 aa9.19□□□□□ -0.94
SHKBP1-228ENST00000602239 TMEM218A2RU14 115 aa9.19□□□□□ -0.94
SHKBP1-228ENST00000602239 PMVKQ15126 192 aa9.19□□□□□ -0.94
SHKBP1-228ENST00000602239 NKAPP1Q8N9T2 125 aa9.19□□□□□ -0.94
SHKBP1-228ENST00000602239 GNB1LQ9BYB4 327 aa9.19□□□□□ -0.94
SHKBP1-228ENST00000602239 IGKV2-28A0A075B6P5 120 aa9.18□□□□□ -0.94
SHKBP1-228ENST00000602239 IGKV2D-28P01615 120 aa9.18□□□□□ -0.94
SHKBP1-228ENST00000602239 UBE2AP49459 152 aa9.18□□□□□ -0.94
SHKBP1-228ENST00000602239 PFN2P35080 140 aa9.17□□□□□ -0.94
SHKBP1-228ENST00000602239 RETNLBQ9BQ08 111 aa9.17□□□□□ -0.94
SHKBP1-228ENST00000602239 MRPL18Q9H0U6 180 aaKnown RBP9.17□□□□□ -0.94
SHKBP1-228ENST00000602239 LINC01549A6NIU2 74 aa9.16□□□□□ -0.94
SHKBP1-228ENST00000602239 ATP5LO75964 103 aa9.16□□□□□ -0.94
SHKBP1-228ENST00000602239 FA2HQ7L5A8 372 aa9.16□□□□□ -0.94
SHKBP1-228ENST00000602239 IGLV5-39A0A0G2JS06 123 aa9.15□□□□□ -0.94
SHKBP1-228ENST00000602239 A0A096LNJ9 63 aa9.14□□□□□ -0.95
SHKBP1-228ENST00000602239 TMEM238C9JI98 176 aa9.14□□□□□ -0.95
SHKBP1-228ENST00000602239 H3BRM9 83 aa9.14□□□□□ -0.95
SHKBP1-228ENST00000602239 IGLC3P0DOY3 106 aa9.14□□□□□ -0.95
SHKBP1-228ENST00000602239 VPREB1P12018 145 aa9.14□□□□□ -0.95
SHKBP1-228ENST00000602239 S100PP25815 95 aa9.14□□□□□ -0.95
SHKBP1-228ENST00000602239 PRLHP81277 87 aa9.14□□□□□ -0.95
SHKBP1-228ENST00000602239 FABP9Q0Z7S8 132 aa9.14□□□□□ -0.95
SHKBP1-228ENST00000602239 UQCC3Q6UW78 93 aa9.14□□□□□ -0.95
SHKBP1-228ENST00000602239 Q8NDZ9 215 aa9.14□□□□□ -0.95
SHKBP1-228ENST00000602239 SND1-IT1Q9HBX3 110 aa9.14□□□□□ -0.95
SHKBP1-228ENST00000602239 ZNF22P17026 224 aaPredicted RBP9.13□□□□□ -0.95
SHKBP1-228ENST00000602239 NDUFA6P56556 154 aa9.13□□□□□ -0.95
SHKBP1-228ENST00000602239 FAM229BQ4G0N7 80 aa9.13□□□□□ -0.95
SHKBP1-228ENST00000602239 SMCO4Q9NRQ5 59 aa9.13□□□□□ -0.95
SHKBP1-228ENST00000602239 IFITM2Q01629 132 aa9.12□□□□□ -0.95
SHKBP1-228ENST00000602239 LINC00304Q8N9R0 145 aa9.12□□□□□ -0.95
SHKBP1-228ENST00000602239 URB1-AS1Q96HZ7 61 aa9.12□□□□□ -0.95
SHKBP1-228ENST00000602239 ZNF625Q96I27 306 aaPredicted RBP9.12□□□□□ -0.95
SHKBP1-228ENST00000602239 SEC11CQ9BY50 192 aa9.12□□□□□ -0.95
SHKBP1-228ENST00000602239 ERG28Q9UKR5 140 aa9.12□□□□□ -0.95
SHKBP1-228ENST00000602239 FAM19A1Q7Z5A9 133 aa9.11□□□□□ -0.95
SHKBP1-228ENST00000602239 TMEM126AQ9H061 195 aa9.11□□□□□ -0.95
SHKBP1-228ENST00000602239 IGKV2D-26A0A0A0MRZ7 120 aa9.09□□□□□ -0.95
SHKBP1-228ENST00000602239 A0A0U1RQV1 116 aa9.09□□□□□ -0.95
SHKBP1-228ENST00000602239 M0R378 163 aa9.09□□□□□ -0.95
SHKBP1-228ENST00000602239 PMCHL1Q16048 86 aa9.09□□□□□ -0.95
SHKBP1-228ENST00000602239 COX19Q49B96 90 aa9.09□□□□□ -0.95
SHKBP1-228ENST00000602239 PLEKHB2Q96CS7 222 aa9.09□□□□□ -0.95
SHKBP1-228ENST00000602239 LINC00614P0C842 121 aa9.08□□□□□ -0.96
SHKBP1-228ENST00000602239 COX17Q14061 63 aa9.08□□□□□ -0.96
SHKBP1-228ENST00000602239 RPL24P83731 157 aaKnown RBP9.07□□□□□ -0.96
SHKBP1-228ENST00000602239 LCE2AQ5TA79 106 aaPredicted RBP9.07□□□□□ -0.96
SHKBP1-228ENST00000602239 C3orf22Q8N5N4 141 aa9.07□□□□□ -0.96
SHKBP1-228ENST00000602239 C18orf32Q8TCD1 76 aa9.07□□□□□ -0.96
SHKBP1-228ENST00000602239 C11orf86A6NJI1 115 aa9.06□□□□□ -0.96
SHKBP1-228ENST00000602239 RPS10P5Q9NQ39 176 aa9.06□□□□□ -0.96
SHKBP1-228ENST00000602239 IGLV7-46A0A075B6I9 117 aa9.05□□□□□ -0.96
SHKBP1-228ENST00000602239 C10orf91Q5T1B1 145 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms