RNA–Protein interactions for RNA: ENST00000600031.1

VRK3-218, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,110 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-218ENST00000600031 HERVK_113P63121 156 aa10.47□□□□□ -0.73
VRK3-218ENST00000600031 GAGE6Q13070 117 aa10.47□□□□□ -0.73
VRK3-218ENST00000600031 FAM19A3Q7Z5A8 133 aa10.47□□□□□ -0.73
VRK3-218ENST00000600031 CDKN2A-AS1Q9UH64 79 aa10.47□□□□□ -0.73
VRK3-218ENST00000600031 H3BNG1 76 aa10.46□□□□□ -0.73
VRK3-218ENST00000600031 CIRBPQ14011 172 aaKnown RBP10.46□□□□□ -0.73
VRK3-218ENST00000600031 TMEM101Q96IK0 257 aa10.46□□□□□ -0.73
VRK3-218ENST00000600031 CHCHD5Q9BSY4 110 aa10.46□□□□□ -0.73
VRK3-218ENST00000600031 CSDC2Q9Y534 153 aaKnown RBP10.46□□□□□ -0.73
VRK3-218ENST00000600031 XGP55808 180 aa10.46□□□□□ -0.74
VRK3-218ENST00000600031 H7C423 109 aa10.45□□□□□ -0.74
VRK3-218ENST00000600031 MT-ATP8P03928 68 aa10.45□□□□□ -0.74
VRK3-218ENST00000600031 TRAV10A0A0B4J240 114 aa10.45□□□□□ -0.74
VRK3-218ENST00000600031 RPL13AP40429 203 aaKnown RBP10.45□□□□□ -0.74
VRK3-218ENST00000600031 CKS1BP61024 79 aa10.45□□□□□ -0.74
VRK3-218ENST00000600031 STAB2Q8WWQ8 2551 aa10.44□□□□□ -0.74
VRK3-218ENST00000600031 IGLV5-39A0A0G2JS06 123 aa10.44□□□□□ -0.74
VRK3-218ENST00000600031 NTN5Q8WTR8 489 aaPredicted RBP10.44□□□□□ -0.74
VRK3-218ENST00000600031 NHLRC4P0CG21 123 aaPredicted RBP10.43□□□□□ -0.74
VRK3-218ENST00000600031 CDC42SE2Q9NRR3 84 aa10.43□□□□□ -0.74
VRK3-218ENST00000600031 LINC00242Q5T6M2 205 aa10.43□□□□□ -0.74
VRK3-218ENST00000600031 COPS9Q8WXC6 57 aa10.43□□□□□ -0.74
VRK3-218ENST00000600031 IGLV4-60A0A075B6I1 120 aa10.42□□□□□ -0.74
VRK3-218ENST00000600031 H3BT86 120 aa10.42□□□□□ -0.74
VRK3-218ENST00000600031 COX6A2Q02221 97 aa10.42□□□□□ -0.74
VRK3-218ENST00000600031 LYPD5Q6UWN5 251 aa10.42□□□□□ -0.74
VRK3-218ENST00000600031 NPC2P61916 151 aa10.42□□□□□ -0.74
VRK3-218ENST00000600031 LELP1Q5T871 98 aa10.41□□□□□ -0.74
VRK3-218ENST00000600031 C2orf82Q6UX34 121 aa10.4□□□□□ -0.74
VRK3-218ENST00000600031 LST1O00453 97 aa10.4□□□□□ -0.74
VRK3-218ENST00000600031 UBE2WQ96B02 151 aa10.4□□□□□ -0.74
VRK3-218ENST00000600031 Q9H8V8 135 aa10.4□□□□□ -0.74
VRK3-218ENST00000600031 LINC00308Q8TCZ7 52 aa10.39□□□□□ -0.75
VRK3-218ENST00000600031 SMIM1B2RUZ4 78 aa10.39□□□□□ -0.75
VRK3-218ENST00000600031 HERV-K104P63124 156 aa10.38□□□□□ -0.75
VRK3-218ENST00000600031 Q8N3U1 123 aa10.38□□□□□ -0.75
VRK3-218ENST00000600031 TRAV8-4A0A0B4J246 113 aa10.37□□□□□ -0.75
VRK3-218ENST00000600031 A0A1B0GUV1 79 aa10.37□□□□□ -0.75
VRK3-218ENST00000600031 ESRGQ1W209 222 aa10.37□□□□□ -0.75
VRK3-218ENST00000600031 DAND5Q8N907 189 aa10.37□□□□□ -0.75
VRK3-218ENST00000600031 PPDPFQ9H3Y8 114 aa10.37□□□□□ -0.75
VRK3-218ENST00000600031 TRAV13-1A0A0B4J241 112 aa10.36□□□□□ -0.75
VRK3-218ENST00000600031 TEX49A0A1B0GTD5 131 aa10.36□□□□□ -0.75
VRK3-218ENST00000600031 CLEC2BQ92478 149 aa10.36□□□□□ -0.75
VRK3-218ENST00000600031 ZNF625Q96I27 306 aaPredicted RBP10.36□□□□□ -0.75
VRK3-218ENST00000600031 C15orf53Q8NAA6 179 aa10.35□□□□□ -0.75
VRK3-218ENST00000600031 IGKV3OR2-268A0A0C4DH90 116 aa10.34□□□□□ -0.75
VRK3-218ENST00000600031 SNCGO76070 127 aa10.34□□□□□ -0.75
VRK3-218ENST00000600031 MEIG1Q5JSS6 88 aa10.34□□□□□ -0.75
VRK3-218ENST00000600031 WFDC10BQ8IUB3 73 aa10.33□□□□□ -0.76
VRK3-218ENST00000600031 COX7A2LO14548 114 aa10.32□□□□□ -0.76
VRK3-218ENST00000600031 CLPSL2Q6UWE3 100 aa10.32□□□□□ -0.76
VRK3-218ENST00000600031 DYNC2H1Q8NCM8 4307 aaKnown RBP10.32□□□□□ -0.76
VRK3-218ENST00000600031 ANGP03950 147 aaKnown RBP10.31□□□□□ -0.76
VRK3-218ENST00000600031 SOSTDC1Q6X4U4 206 aa10.31□□□□□ -0.76
VRK3-218ENST00000600031 LINC00269Q8N2A0 174 aa10.31□□□□□ -0.76
VRK3-218ENST00000600031 DNAH7Q8WXX0 4024 aa10.31□□□□□ -0.76
VRK3-218ENST00000600031 FAM240AA0A1B0GVK7 77 aa10.31□□□□□ -0.76
VRK3-218ENST00000600031 GAGE2BQ13066 116 aa10.31□□□□□ -0.76
VRK3-218ENST00000600031 GAGE2EQ4V326 116 aa10.31□□□□□ -0.76
VRK3-218ENST00000600031 Q6Q795 121 aa10.31□□□□□ -0.76
VRK3-218ENST00000600031 GAGE2DQ9UEU5 116 aa10.31□□□□□ -0.76
VRK3-218ENST00000600031 FBN3Q75N90 2809 aa10.3□□□□□ -0.76
VRK3-218ENST00000600031 A0A0U1RRA0 63 aa10.3□□□□□ -0.76
VRK3-218ENST00000600031 LINC00959A0A1B0GUT2 108 aa10.3□□□□□ -0.76
VRK3-218ENST00000600031 CSMD3Q7Z407 3707 aa10.3□□□□□ -0.76
VRK3-218ENST00000600031 LINC00588Q9Y4M8 146 aa10.29□□□□□ -0.76
VRK3-218ENST00000600031 ANAPC13Q9BS18 74 aa10.28□□□□□ -0.76
VRK3-218ENST00000600031 REG3AQ06141 175 aa10.28□□□□□ -0.76
VRK3-218ENST00000600031 KLK12Q9UKR0 248 aa10.28□□□□□ -0.76
VRK3-218ENST00000600031 TRACP01848 142 aa10.27□□□□□ -0.77
VRK3-218ENST00000600031 COX7B2Q8TF08 81 aa10.27□□□□□ -0.77
VRK3-218ENST00000600031 TRAV13-2A0A0B4J235 113 aa10.26□□□□□ -0.77
VRK3-218ENST00000600031 SS18Q15532 418 aa10.26□□□□□ -0.77
VRK3-218ENST00000600031 CCL18P55774 89 aa10.25□□□□□ -0.77
VRK3-218ENST00000600031 PRR34Q9NV39 138 aa10.25□□□□□ -0.77
VRK3-218ENST00000600031 APLNQ9ULZ1 77 aa10.25□□□□□ -0.77
VRK3-218ENST00000600031 IGHV3OR16-9A0A0B4J2B5 98 aa10.25□□□□□ -0.77
VRK3-218ENST00000600031 XCL1P47992 114 aa10.25□□□□□ -0.77
VRK3-218ENST00000600031 ENHOQ6UWT2 76 aa10.25□□□□□ -0.77
VRK3-218ENST00000600031 ACYP1P07311 99 aa10.24□□□□□ -0.77
VRK3-218ENST00000600031 LINC01556Q5JQF7 62 aa10.24□□□□□ -0.77
VRK3-218ENST00000600031 LYSTQ99698 3801 aa10.24□□□□□ -0.77
VRK3-218ENST00000600031 IGLV10-54A0A075B6I4 117 aa10.24□□□□□ -0.77
VRK3-218ENST00000600031 TTC32Q5I0X7 151 aa10.24□□□□□ -0.77
VRK3-218ENST00000600031 NUPR2A6NF83 97 aa10.23□□□□□ -0.77
VRK3-218ENST00000600031 DNAH10OSP0CZ25 163 aa10.22□□□□□ -0.77
VRK3-218ENST00000600031 RPL28P46779 137 aaKnown RBP10.22□□□□□ -0.77
VRK3-218ENST00000600031 NDUFV3P56181 108 aaKnown RBP10.22□□□□□ -0.77
VRK3-218ENST00000600031 C5orf38Q86SI9 138 aa10.22□□□□□ -0.77
VRK3-218ENST00000600031 PLECQ15149 4684 aaKnown RBP10.22□□□□□ -0.77
VRK3-218ENST00000600031 CRPP02741 224 aa10.22□□□□□ -0.77
VRK3-218ENST00000600031 MIR7-3HGQ8N6C7 128 aa10.22□□□□□ -0.77
VRK3-218ENST00000600031 CHCHD10Q8WYQ3 142 aaPredicted RBP10.22□□□□□ -0.77
VRK3-218ENST00000600031 STARD9Q9P2P6 4700 aa10.22□□□□□ -0.77
VRK3-218ENST00000600031 A0A087WZ39 114 aa10.21□□□□□ -0.78
VRK3-218ENST00000600031 UPK3BQ9BT76 320 aa10.21□□□□□ -0.78
VRK3-218ENST00000600031 SND1-IT1Q9HBX3 110 aa10.21□□□□□ -0.78
VRK3-218ENST00000600031 TOMM7Q9P0U1 55 aa10.21□□□□□ -0.78
VRK3-218ENST00000600031 KLK5Q9Y337 293 aaPredicted RBP10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms