RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 RPL37AP8A6NKH3 93 aa5.05□□□□□ -1.6
SHKBP1-220ENST00000599716 IFI27P40305 119 aaPredicted RBP5.05□□□□□ -1.6
SHKBP1-220ENST00000599716 KRTAP13-2Q52LG2 175 aa5.05□□□□□ -1.6
SHKBP1-220ENST00000599716 LINC00173Q6ZV60 143 aa5.05□□□□□ -1.6
SHKBP1-220ENST00000599716 TYMSOSQ8TAI1 123 aa5.05□□□□□ -1.6
SHKBP1-220ENST00000599716 TMEM141Q96I45 108 aa5.05□□□□□ -1.6
SHKBP1-220ENST00000599716 CARHSP1Q9Y2V2 147 aaKnown RBP5.05□□□□□ -1.6
SHKBP1-220ENST00000599716 SSPOA2VEC9 5147 aa5.05□□□□□ -1.6
SHKBP1-220ENST00000599716 A0A1B0GXF2 115 aa5.04□□□□□ -1.6
SHKBP1-220ENST00000599716 SCO1O75880 301 aa5.04□□□□□ -1.6
SHKBP1-220ENST00000599716 PRELID3AQ96N28 172 aa5.04□□□□□ -1.6
SHKBP1-220ENST00000599716 MACF1Q9UPN3 7388 aaKnown RBP5.04□□□□□ -1.6
SHKBP1-220ENST00000599716 PRSS2P07478 247 aa5.03□□□□□ -1.6
SHKBP1-220ENST00000599716 RAB5AP20339 215 aa5.03□□□□□ -1.6
SHKBP1-220ENST00000599716 CKS1BP61024 79 aa5.03□□□□□ -1.6
SHKBP1-220ENST00000599716 TEX43Q6ZNM6 134 aa5.03□□□□□ -1.6
SHKBP1-220ENST00000599716 TMEM136Q6ZRR5 245 aa5.03□□□□□ -1.6
SHKBP1-220ENST00000599716 MRPL55Q7Z7F7 128 aaKnown RBP5.03□□□□□ -1.6
SHKBP1-220ENST00000599716 AKAP14Q86UN6 197 aa5.03□□□□□ -1.6
SHKBP1-220ENST00000599716 NAT8Q9UHE5 227 aa5.03□□□□□ -1.6
SHKBP1-220ENST00000599716 USH2AO75445 5202 aa5.02□□□□□ -1.61
SHKBP1-220ENST00000599716 BCE1O60756 84 aa5.02□□□□□ -1.61
SHKBP1-220ENST00000599716 CRYGAP11844 174 aa5.02□□□□□ -1.61
SHKBP1-220ENST00000599716 C6orf226Q5I0X4 101 aa5.02□□□□□ -1.61
SHKBP1-220ENST00000599716 ORMDL3Q8N138 153 aa5.02□□□□□ -1.61
SHKBP1-220ENST00000599716 LINC00167Q96N53 147 aa5.02□□□□□ -1.61
SHKBP1-220ENST00000599716 ALKBH7Q9BT30 221 aaPredicted RBP5.02□□□□□ -1.61
SHKBP1-220ENST00000599716 CDKN2A-AS1Q9UH64 79 aa5.02□□□□□ -1.61
SHKBP1-220ENST00000599716 PYGO1Q9Y3Y4 419 aa5.02□□□□□ -1.61
SHKBP1-220ENST00000599716 A0A1B0GW15 77 aa5.01□□□□□ -1.61
SHKBP1-220ENST00000599716 F8W036 122 aa5.01□□□□□ -1.61
SHKBP1-220ENST00000599716 NUPR1O60356 82 aa5.01□□□□□ -1.61
SHKBP1-220ENST00000599716 RPL28P46779 137 aaKnown RBP5.01□□□□□ -1.61
SHKBP1-220ENST00000599716 C2orf66Q6UXQ4 117 aa5.01□□□□□ -1.61
SHKBP1-220ENST00000599716 Q6ZN92 141 aa5.01□□□□□ -1.61
SHKBP1-220ENST00000599716 RAB5BP61020 215 aa5□□□□□ -1.61
SHKBP1-220ENST00000599716 LBHQ53QV2 105 aaPredicted RBP5□□□□□ -1.61
SHKBP1-220ENST00000599716 Q8IZM0 81 aa5□□□□□ -1.61
SHKBP1-220ENST00000599716 AMELXQ99217 191 aa5□□□□□ -1.61
SHKBP1-220ENST00000599716 C2orf88Q9BSF0 95 aa5□□□□□ -1.61
SHKBP1-220ENST00000599716 CDIP1Q9H305 208 aa5□□□□□ -1.61
SHKBP1-220ENST00000599716 VCX2Q9H322 139 aa5□□□□□ -1.61
SHKBP1-220ENST00000599716 CYSLTR1Q9Y271 337 aa5□□□□□ -1.61
SHKBP1-220ENST00000599716 IGKV2-28A0A075B6P5 120 aa4.99□□□□□ -1.61
SHKBP1-220ENST00000599716 IGKV2D-28P01615 120 aa4.99□□□□□ -1.61
SHKBP1-220ENST00000599716 PPBPP02775 128 aa4.99□□□□□ -1.61
SHKBP1-220ENST00000599716 PRLHP81277 87 aa4.99□□□□□ -1.61
SHKBP1-220ENST00000599716 KRTAP13-1Q8IUC0 172 aa4.99□□□□□ -1.61
SHKBP1-220ENST00000599716 LINC00304Q8N9R0 145 aa4.99□□□□□ -1.61
SHKBP1-220ENST00000599716 MAP1LC3AQ9H492 121 aa4.99□□□□□ -1.61
SHKBP1-220ENST00000599716 IGLV7-46A0A075B6I9 117 aa4.98□□□□□ -1.61
SHKBP1-220ENST00000599716 IGIPA6NJ69 53 aa4.98□□□□□ -1.61
SHKBP1-220ENST00000599716 A6NJY4 79 aa4.98□□□□□ -1.61
SHKBP1-220ENST00000599716 F8VRH5 84 aa4.98□□□□□ -1.61
SHKBP1-220ENST00000599716 S100A8P05109 93 aa4.98□□□□□ -1.61
SHKBP1-220ENST00000599716 UBE2AP49459 152 aa4.98□□□□□ -1.61
SHKBP1-220ENST00000599716 LINC01547P58512 204 aaPredicted RBP4.98□□□□□ -1.61
SHKBP1-220ENST00000599716 LINC01561Q8N1V8 128 aa4.98□□□□□ -1.61
SHKBP1-220ENST00000599716 C3orf22Q8N5N4 141 aa4.98□□□□□ -1.61
SHKBP1-220ENST00000599716 Q8N8P6 123 aa4.98□□□□□ -1.61
SHKBP1-220ENST00000599716 SMIM1B2RUZ4 78 aa4.97□□□□□ -1.61
SHKBP1-220ENST00000599716 TMEM238C9JI98 176 aa4.97□□□□□ -1.61
SHKBP1-220ENST00000599716 PNRC1Q12796 327 aaPredicted RBP4.97□□□□□ -1.61
SHKBP1-220ENST00000599716 TP73-AS1Q9UF72 201 aa4.97□□□□□ -1.61
SHKBP1-220ENST00000599716 PRSS47A8MTI9 375 aa4.96□□□□□ -1.62
SHKBP1-220ENST00000599716 SPINK8P0C7L1 97 aa4.96□□□□□ -1.62
SHKBP1-220ENST00000599716 ADCYAP1P18509 176 aa4.96□□□□□ -1.62
SHKBP1-220ENST00000599716 HERVK_113P63121 156 aa4.96□□□□□ -1.62
SHKBP1-220ENST00000599716 KRTAP4-11Q9BYQ6 195 aa4.96□□□□□ -1.62
SHKBP1-220ENST00000599716 GEMIN7Q9H840 131 aaKnown RBP4.96□□□□□ -1.62
SHKBP1-220ENST00000599716 IGKV2D-26A0A0A0MRZ7 120 aa4.95□□□□□ -1.62
SHKBP1-220ENST00000599716 PEA15Q15121 130 aa4.95□□□□□ -1.62
SHKBP1-220ENST00000599716 TPRXLQ17RH7 258 aa4.95□□□□□ -1.62
SHKBP1-220ENST00000599716 ATP5L2Q7Z4Y8 100 aa4.95□□□□□ -1.62
SHKBP1-220ENST00000599716 FAM19A3Q7Z5A8 133 aa4.95□□□□□ -1.62
SHKBP1-220ENST00000599716 SLC7A5P1Q8MH63 180 aa4.95□□□□□ -1.62
SHKBP1-220ENST00000599716 NKAPP1Q8N9T2 125 aa4.95□□□□□ -1.62
SHKBP1-220ENST00000599716 Q8NDZ9 215 aa4.95□□□□□ -1.62
SHKBP1-220ENST00000599716 COX7B2Q8TF08 81 aa4.95□□□□□ -1.62
SHKBP1-220ENST00000599716 KRTAP4-1Q9BYQ7 146 aa4.95□□□□□ -1.62
SHKBP1-220ENST00000599716 PPDPFQ9H3Y8 114 aa4.95□□□□□ -1.62
SHKBP1-220ENST00000599716 FCGBPQ9Y6R7 5405 aaPredicted RBP4.95□□□□□ -1.62
SHKBP1-220ENST00000599716 NEBP20929 6669 aa4.94□□□□□ -1.62
SHKBP1-220ENST00000599716 IFITM2Q01629 132 aa4.94□□□□□ -1.62
SHKBP1-220ENST00000599716 KIAA1644Q3SXP7 199 aa4.94□□□□□ -1.62
SHKBP1-220ENST00000599716 ORMDL2Q53FV1 153 aa4.94□□□□□ -1.62
SHKBP1-220ENST00000599716 FAM19A1Q7Z5A9 133 aa4.94□□□□□ -1.62
SHKBP1-220ENST00000599716 PFN2P35080 140 aa4.93□□□□□ -1.62
SHKBP1-220ENST00000599716 FAM229BQ4G0N7 80 aa4.93□□□□□ -1.62
SHKBP1-220ENST00000599716 IGLV5-37A0A075B6J1 123 aa4.92□□□□□ -1.62
SHKBP1-220ENST00000599716 TOMM6Q96B49 74 aa4.92□□□□□ -1.62
SHKBP1-220ENST00000599716 SCGB3A1Q96QR1 104 aa4.92□□□□□ -1.62
SHKBP1-220ENST00000599716 TMEM126AQ9H061 195 aa4.92□□□□□ -1.62
SHKBP1-220ENST00000599716 LAMTOR2Q9Y2Q5 125 aa4.92□□□□□ -1.62
SHKBP1-220ENST00000599716 LOC105371267A0A1B0GV96 52 aa4.91□□□□□ -1.62
SHKBP1-220ENST00000599716 M0R378 163 aa4.91□□□□□ -1.62
SHKBP1-220ENST00000599716 VPREB1P12018 145 aa4.91□□□□□ -1.62
SHKBP1-220ENST00000599716 CXCL5P42830 114 aa4.91□□□□□ -1.62
SHKBP1-220ENST00000599716 PDZD11Q5EBL8 140 aa4.91□□□□□ -1.62
SHKBP1-220ENST00000599716 DAND5Q8N907 189 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms