RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 AKAP13Q12802 2813 aa2.61□□□□□ -1.99
VMP1-208ENST00000588617 RIF1Q5UIP0 2472 aaKnown RBP2.61□□□□□ -1.99
VMP1-208ENST00000588617 CYB5AP00167 134 aa2.61□□□□□ -1.99
VMP1-208ENST00000588617 UBE2G1P62253 170 aa2.61□□□□□ -1.99
VMP1-208ENST00000588617 C9orf116Q5BN46 136 aaPredicted RBP2.61□□□□□ -1.99
VMP1-208ENST00000588617 KRTAP5-7Q6L8G8 165 aa2.61□□□□□ -1.99
VMP1-208ENST00000588617 S100A13Q99584 98 aa2.61□□□□□ -1.99
VMP1-208ENST00000588617 ADGRG4Q8IZF6 3080 aa2.61□□□□□ -1.99
VMP1-208ENST00000588617 ANKRD11Q6UB99 2663 aaPredicted RBP2.61□□□□□ -1.99
VMP1-208ENST00000588617 CEP250Q9BV73 2442 aa2.6□□□□□ -1.99
VMP1-208ENST00000588617 TRBV30A0A0K0K1B3 111 aa2.6□□□□□ -1.99
VMP1-208ENST00000588617 SNRPGP15A8MWD9 76 aa2.6□□□□□ -1.99
VMP1-208ENST00000588617 C5orf56Q8N8D9 126 aa2.6□□□□□ -1.99
VMP1-208ENST00000588617 LSM10Q969L4 123 aaKnown RBP2.6□□□□□ -1.99
VMP1-208ENST00000588617 LINC00208Q96KT6 92 aa2.6□□□□□ -1.99
VMP1-208ENST00000588617 SCP2D1Q9UJQ7 156 aa2.6□□□□□ -1.99
VMP1-208ENST00000588617 KALRNO60229 2985 aa2.59□□□□□ -1.99
VMP1-208ENST00000588617 ITPR1Q14643 2758 aa2.59□□□□□ -1.99
VMP1-208ENST00000588617 KNTC1P50748 2209 aa2.59□□□□□ -1.99
VMP1-208ENST00000588617 TRAV12-3A0A0B4J271 114 aa2.59□□□□□ -1.99
VMP1-208ENST00000588617 PIGBOS1A0A0B4J2F0 54 aa2.59□□□□□ -1.99
VMP1-208ENST00000588617 TEX49A0A1B0GTD5 131 aa2.59□□□□□ -1.99
VMP1-208ENST00000588617 IQCF6A8MYZ5 107 aa2.59□□□□□ -1.99
VMP1-208ENST00000588617 GNG2P59768 71 aa2.59□□□□□ -1.99
VMP1-208ENST00000588617 CYP2G1PQ6ZSU1 146 aa2.59□□□□□ -1.99
VMP1-208ENST00000588617 RPRMQ9NS64 109 aa2.59□□□□□ -1.99
VMP1-208ENST00000588617 FAM186AA6NE01 2351 aa2.59□□□□□ -2
VMP1-208ENST00000588617 PIEZO1Q92508 2521 aa2.59□□□□□ -2
VMP1-208ENST00000588617 SMG1Q96Q15 3661 aaKnown RBP2.58□□□□□ -2
VMP1-208ENST00000588617 DSPP15924 2871 aaKnown RBP2.58□□□□□ -2
VMP1-208ENST00000588617 CACNA1AO00555 2505 aa2.58□□□□□ -2
VMP1-208ENST00000588617 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.58□□□□□ -2
VMP1-208ENST00000588617 MCRIP1C9JLW8 97 aa2.58□□□□□ -2
VMP1-208ENST00000588617 H3BSH0 61 aa2.58□□□□□ -2
VMP1-208ENST00000588617 Q6AWC8 147 aa2.58□□□□□ -2
VMP1-208ENST00000588617 ARHGAP5-AS1Q96IT6 56 aa2.58□□□□□ -2
VMP1-208ENST00000588617 NBEAQ8NFP9 2946 aa2.57□□□□□ -2
VMP1-208ENST00000588617 CNOT1A5YKK6 2376 aaKnown RBP2.57□□□□□ -2
VMP1-208ENST00000588617 ARL14EPLP0DKL9 152 aa2.57□□□□□ -2
VMP1-208ENST00000588617 NPC2P61916 151 aa2.57□□□□□ -2
VMP1-208ENST00000588617 Q56UQ5 140 aa2.57□□□□□ -2
VMP1-208ENST00000588617 MUC19Q7Z5P9 8384 aa2.57□□□□□ -2
VMP1-208ENST00000588617 S100A1P23297 94 aa2.56□□□□□ -2
VMP1-208ENST00000588617 CBLN1P23435 193 aa2.56□□□□□ -2
VMP1-208ENST00000588617 PIGYQ3MUY2 71 aa2.56□□□□□ -2
VMP1-208ENST00000588617 C6orf201Q7Z4U5 140 aa2.56□□□□□ -2
VMP1-208ENST00000588617 TLN1Q9Y490 2541 aaKnown RBP2.56□□□□□ -2
VMP1-208ENST00000588617 CRYM-AS1A6NIL9 109 aa2.55□□□□□ -2
VMP1-208ENST00000588617 COL6A6A6NMZ7 2263 aa2.55□□□□□ -2
VMP1-208ENST00000588617 CORTO00230 105 aa2.55□□□□□ -2
VMP1-208ENST00000588617 APC2O95996 2303 aa2.55□□□□□ -2
VMP1-208ENST00000588617 PTPRZ1P23471 2315 aaPredicted RBP2.55□□□□□ -2
VMP1-208ENST00000588617 RELNP78509 3460 aa2.55□□□□□ -2
VMP1-208ENST00000588617 SPTSSBQ8NFR3 76 aa2.55□□□□□ -2
VMP1-208ENST00000588617 NMES1Q9C002 83 aa2.55□□□□□ -2
VMP1-208ENST00000588617 PIEZO2Q9H5I5 2752 aa2.54□□□□□ -2
VMP1-208ENST00000588617 SFT2D2O95562 160 aa2.54□□□□□ -2
VMP1-208ENST00000588617 IFNA17P01571 189 aa2.54□□□□□ -2
VMP1-208ENST00000588617 HMGN3Q15651 99 aa2.54□□□□□ -2
VMP1-208ENST00000588617 NCMAPQ5T1S8 102 aa2.54□□□□□ -2
VMP1-208ENST00000588617 C9orf62Q8N4C0 152 aa2.54□□□□□ -2
VMP1-208ENST00000588617 CACFD1Q9UGQ2 172 aa2.54□□□□□ -2
VMP1-208ENST00000588617 CNTRLQ7Z7A1 2325 aa2.54□□□□□ -2
VMP1-208ENST00000588617 NCOR2Q9Y618 2525 aa2.53□□□□□ -2
VMP1-208ENST00000588617 IGF2RP11717 2491 aa2.53□□□□□ -2
VMP1-208ENST00000588617 CFAP46Q8IYW2 2715 aa2.53□□□□□ -2
VMP1-208ENST00000588617 ATP6V1G2-DDX39BF2Z307 99 aa2.53□□□□□ -2
VMP1-208ENST00000588617 S100PP25815 95 aa2.53□□□□□ -2
VMP1-208ENST00000588617 ZNF56Q15929 161 aa2.53□□□□□ -2
VMP1-208ENST00000588617 PPP1R1CQ8WVI7 109 aa2.53□□□□□ -2
VMP1-208ENST00000588617 FXYD6Q9H0Q3 95 aa2.53□□□□□ -2
VMP1-208ENST00000588617 KAAG1Q9UBP8 84 aa2.53□□□□□ -2
VMP1-208ENST00000588617 SPTA1P02549 2419 aa2.53□□□□□ -2
VMP1-208ENST00000588617 ACACAQ13085 2346 aa2.53□□□□□ -2
VMP1-208ENST00000588617 MED12Q93074 2177 aa2.53□□□□□ -2
VMP1-208ENST00000588617 SPTBN4Q9H254 2564 aa2.53□□□□□ -2.01
VMP1-208ENST00000588617 CHD8Q9HCK8 2581 aa2.53□□□□□ -2.01
VMP1-208ENST00000588617 COL12A1Q99715 3063 aa2.53□□□□□ -2.01
VMP1-208ENST00000588617 PTPRQQ9UMZ3 2332 aa2.52□□□□□ -2.01
VMP1-208ENST00000588617 CACNA1CQ13936 2221 aa2.52□□□□□ -2.01
VMP1-208ENST00000588617 MPC2O95563 127 aa2.52□□□□□ -2.01
VMP1-208ENST00000588617 GNG4P50150 75 aa2.52□□□□□ -2.01
VMP1-208ENST00000588617 UBA52P62987 128 aaKnown RBP2.52□□□□□ -2.01
VMP1-208ENST00000588617 TFF3Q07654 80 aa2.52□□□□□ -2.01
VMP1-208ENST00000588617 CATR1Q13166 79 aa2.52□□□□□ -2.01
VMP1-208ENST00000588617 ZNF818PQ6ZRF7 136 aa2.52□□□□□ -2.01
VMP1-208ENST00000588617 AQP10Q96PS8 301 aa2.52□□□□□ -2.01
VMP1-208ENST00000588617 COA4Q9NYJ1 87 aa2.52□□□□□ -2.01
VMP1-208ENST00000588617 LINC00312Q9Y6C7 94 aa2.52□□□□□ -2.01
VMP1-208ENST00000588617 MAP1BP46821 2468 aaKnown RBP2.52□□□□□ -2.01
VMP1-208ENST00000588617 FXYD6-FXYD2A0A087WZ82 144 aa2.51□□□□□ -2.01
VMP1-208ENST00000588617 KANTRA0A1W2PQU2 76 aa2.51□□□□□ -2.01
VMP1-208ENST00000588617 TPPP2P59282 170 aa2.51□□□□□ -2.01
VMP1-208ENST00000588617 Q5BKY6 102 aa2.51□□□□□ -2.01
VMP1-208ENST00000588617 NMSQ5H8A3 153 aa2.51□□□□□ -2.01
VMP1-208ENST00000588617 PKD1L2Q7Z442 2459 aa2.51□□□□□ -2.01
VMP1-208ENST00000588617 ANKHD1Q8IWZ3 2542 aaKnown RBP2.5□□□□□ -2.01
VMP1-208ENST00000588617 SPTBN2O15020 2390 aa2.5□□□□□ -2.01
VMP1-208ENST00000588617 A0A1W2PPM0 123 aa2.5□□□□□ -2.01
VMP1-208ENST00000588617 DEFB108AA8MXU0 73 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms