RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 SEC11AP67812 179 aa7.02□□□□□ -1.29
LIG3-209ENST00000586435 ZC2HC1BQ5TFG8 222 aa7.02□□□□□ -1.29
LIG3-209ENST00000586435 LINC00469Q8N7U9 141 aa7.02□□□□□ -1.29
LIG3-209ENST00000586435 ALKBH7Q9BT30 221 aaPredicted RBP7.02□□□□□ -1.29
LIG3-209ENST00000586435 CTDSP1Q9GZU7 261 aa7.02□□□□□ -1.29
LIG3-209ENST00000586435 XAGE1AQ9HD64 81 aa7.02□□□□□ -1.29
LIG3-209ENST00000586435 CXCL5P42830 114 aa7.01□□□□□ -1.29
LIG3-209ENST00000586435 RPL28P46779 137 aaKnown RBP7.01□□□□□ -1.29
LIG3-209ENST00000586435 PAPPA-AS1Q5QFB9 102 aa7.01□□□□□ -1.29
LIG3-209ENST00000586435 MRPL55Q7Z7F7 128 aaKnown RBP7.01□□□□□ -1.29
LIG3-209ENST00000586435 A0A087X002 238 aa7□□□□□ -1.29
LIG3-209ENST00000586435 BCE1O60756 84 aa7□□□□□ -1.29
LIG3-209ENST00000586435 TIMM17AQ99595 171 aa7□□□□□ -1.29
LIG3-209ENST00000586435 NXT2Q9NPJ8 142 aaKnown RBP7□□□□□ -1.29
LIG3-209ENST00000586435 CDKN2A-AS1Q9UH64 79 aa7□□□□□ -1.29
LIG3-209ENST00000586435 CRYGAP11844 174 aa6.99□□□□□ -1.29
LIG3-209ENST00000586435 G0S2P27469 103 aa6.99□□□□□ -1.29
LIG3-209ENST00000586435 PNRC1Q12796 327 aaPredicted RBP6.99□□□□□ -1.29
LIG3-209ENST00000586435 ANAPC16Q96DE5 110 aa6.99□□□□□ -1.29
LIG3-209ENST00000586435 TSPAN13O95857 204 aa6.98□□□□□ -1.29
LIG3-209ENST00000586435 TYMSOSQ8TAI1 123 aa6.98□□□□□ -1.29
LIG3-209ENST00000586435 GEMIN7Q9H840 131 aaKnown RBP6.98□□□□□ -1.29
LIG3-209ENST00000586435 TOMM6Q96B49 74 aa6.97□□□□□ -1.29
LIG3-209ENST00000586435 IGLV5-37A0A075B6J1 123 aa6.96□□□□□ -1.3
LIG3-209ENST00000586435 IGLV5-45A0A087WSX0 123 aa6.96□□□□□ -1.3
LIG3-209ENST00000586435 SMIM1B2RUZ4 78 aa6.96□□□□□ -1.3
LIG3-209ENST00000586435 MT-ND4LP03901 98 aa6.96□□□□□ -1.3
LIG3-209ENST00000586435 PDZD11Q5EBL8 140 aa6.96□□□□□ -1.3
LIG3-209ENST00000586435 LINC00167Q96N53 147 aa6.96□□□□□ -1.3
LIG3-209ENST00000586435 ERASQ7Z444 233 aa6.95□□□□□ -1.3
LIG3-209ENST00000586435 KRTAP13-1Q8IUC0 172 aa6.95□□□□□ -1.3
LIG3-209ENST00000586435 TINCRA0A1B0GVN0 87 aa6.94□□□□□ -1.3
LIG3-209ENST00000586435 FAM229BQ4G0N7 80 aa6.94□□□□□ -1.3
LIG3-209ENST00000586435 LCE2AQ5TA79 106 aaPredicted RBP6.94□□□□□ -1.3
LIG3-209ENST00000586435 COX7B2Q8TF08 81 aa6.94□□□□□ -1.3
LIG3-209ENST00000586435 A0A1B0GVG6 124 aa6.93□□□□□ -1.3
LIG3-209ENST00000586435 LINC01549A6NIU2 74 aa6.93□□□□□ -1.3
LIG3-209ENST00000586435 RPL37AP8A6NKH3 93 aa6.93□□□□□ -1.3
LIG3-209ENST00000586435 KRTAP13-2Q52LG2 175 aa6.93□□□□□ -1.3
LIG3-209ENST00000586435 KRTAP9-2Q9BYQ4 174 aa6.93□□□□□ -1.3
LIG3-209ENST00000586435 UBE2AP49459 152 aa6.92□□□□□ -1.3
LIG3-209ENST00000586435 CTAG1AP78358 180 aa6.92□□□□□ -1.3
LIG3-209ENST00000586435 GAGE10A6NGK3 116 aa6.91□□□□□ -1.3
LIG3-209ENST00000586435 LINC00304Q8N9R0 145 aa6.91□□□□□ -1.3
LIG3-209ENST00000586435 NKAPP1Q8N9T2 125 aa6.91□□□□□ -1.3
LIG3-209ENST00000586435 SCGB3A1Q96QR1 104 aa6.91□□□□□ -1.3
LIG3-209ENST00000586435 LINC01546A6NGU7 62 aa6.9□□□□□ -1.3
LIG3-209ENST00000586435 TPRXLQ17RH7 258 aa6.9□□□□□ -1.3
LIG3-209ENST00000586435 ANAPC11Q9NYG5 84 aa6.9□□□□□ -1.3
LIG3-209ENST00000586435 TRAV9-1A0A075B6T8 112 aa6.89□□□□□ -1.31
LIG3-209ENST00000586435 ADCYAP1P18509 176 aa6.89□□□□□ -1.31
LIG3-209ENST00000586435 MRPL18Q9H0U6 180 aaKnown RBP6.89□□□□□ -1.31
LIG3-209ENST00000586435 CST9LQ9H4G1 147 aa6.89□□□□□ -1.31
LIG3-209ENST00000586435 ATP5LO75964 103 aa6.88□□□□□ -1.31
LIG3-209ENST00000586435 SPINK8P0C7L1 97 aa6.88□□□□□ -1.31
LIG3-209ENST00000586435 RAB5BP61020 215 aa6.88□□□□□ -1.31
LIG3-209ENST00000586435 KIAA1644Q3SXP7 199 aa6.88□□□□□ -1.31
LIG3-209ENST00000586435 RETNLBQ9BQ08 111 aa6.88□□□□□ -1.31
LIG3-209ENST00000586435 FAT4Q6V0I7 4981 aa6.88□□□□□ -1.31
LIG3-209ENST00000586435 IGKV2-28A0A075B6P5 120 aa6.87□□□□□ -1.31
LIG3-209ENST00000586435 IGKV2D-26A0A0A0MRZ7 120 aa6.87□□□□□ -1.31
LIG3-209ENST00000586435 H3BRM9 83 aa6.87□□□□□ -1.31
LIG3-209ENST00000586435 IGKV2D-28P01615 120 aa6.87□□□□□ -1.31
LIG3-209ENST00000586435 PMVKQ15126 192 aa6.87□□□□□ -1.31
LIG3-209ENST00000586435 IGLV5-39A0A0G2JS06 123 aa6.86□□□□□ -1.31
LIG3-209ENST00000586435 VPREB1P12018 145 aa6.86□□□□□ -1.31
LIG3-209ENST00000586435 TMEM126AQ9H061 195 aa6.86□□□□□ -1.31
LIG3-209ENST00000586435 IGLV7-46A0A075B6I9 117 aa6.85□□□□□ -1.31
LIG3-209ENST00000586435 SCO1O75880 301 aa6.85□□□□□ -1.31
LIG3-209ENST00000586435 RAB14P61106 215 aa6.85□□□□□ -1.31
LIG3-209ENST00000586435 PRLHP81277 87 aa6.85□□□□□ -1.31
LIG3-209ENST00000586435 GNB1LQ9BYB4 327 aa6.85□□□□□ -1.31
LIG3-209ENST00000586435 CDIP1Q9H305 208 aa6.85□□□□□ -1.31
LIG3-209ENST00000586435 MUC17Q685J3 4493 aa6.85□□□□□ -1.31
LIG3-209ENST00000586435 IGLC3P0DOY3 106 aa6.84□□□□□ -1.31
LIG3-209ENST00000586435 COX17Q14061 63 aa6.84□□□□□ -1.31
LIG3-209ENST00000586435 FAM19A1Q7Z5A9 133 aa6.84□□□□□ -1.31
LIG3-209ENST00000586435 SND1-IT1Q9HBX3 110 aa6.84□□□□□ -1.31
LIG3-209ENST00000586435 M0R378 163 aa6.83□□□□□ -1.32
LIG3-209ENST00000586435 PFN2P35080 140 aa6.83□□□□□ -1.32
LIG3-209ENST00000586435 RPL24P83731 157 aaKnown RBP6.83□□□□□ -1.32
LIG3-209ENST00000586435 ERG28Q9UKR5 140 aa6.83□□□□□ -1.32
LIG3-209ENST00000586435 TMEM238C9JI98 176 aa6.82□□□□□ -1.32
LIG3-209ENST00000586435 COX19Q49B96 90 aa6.82□□□□□ -1.32
LIG3-209ENST00000586435 FA2HQ7L5A8 372 aa6.82□□□□□ -1.32
LIG3-209ENST00000586435 PLEKHB2Q96CS7 222 aa6.82□□□□□ -1.32
LIG3-209ENST00000586435 SMCO4Q9NRQ5 59 aa6.82□□□□□ -1.32
LIG3-209ENST00000586435 ZNF22P17026 224 aaPredicted RBP6.81□□□□□ -1.32
LIG3-209ENST00000586435 SFTA2Q6UW10 78 aa6.81□□□□□ -1.32
LIG3-209ENST00000586435 S100PP25815 95 aa6.8□□□□□ -1.32
LIG3-209ENST00000586435 CLLU1Q5K131 121 aa6.8□□□□□ -1.32
LIG3-209ENST00000586435 SPAG11AQ6PDA7 123 aa6.8□□□□□ -1.32
LIG3-209ENST00000586435 UQCC3Q6UW78 93 aa6.8□□□□□ -1.32
LIG3-209ENST00000586435 CBLN2Q8IUK8 224 aa6.8□□□□□ -1.32
LIG3-209ENST00000586435 C3orf22Q8N5N4 141 aa6.8□□□□□ -1.32
LIG3-209ENST00000586435 PPDPFQ9H3Y8 114 aa6.8□□□□□ -1.32
LIG3-209ENST00000586435 A0A096LNJ9 63 aa6.79□□□□□ -1.32
LIG3-209ENST00000586435 FP248Q71RG6 208 aaPredicted RBP6.79□□□□□ -1.32
LIG3-209ENST00000586435 Q8NDZ9 215 aa6.79□□□□□ -1.32
LIG3-209ENST00000586435 TMEM218A2RU14 115 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms