RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 APOC3P02656 99 aa9.32□□□□□ -0.92
CLIP3-202ENST00000585466 C9orf129Q5T035 196 aaKnown RBP9.32□□□□□ -0.92
CLIP3-202ENST00000585466 TINCRA0A1B0GVN0 87 aa9.31□□□□□ -0.92
CLIP3-202ENST00000585466 SMIM1B2RUZ4 78 aa9.31□□□□□ -0.92
CLIP3-202ENST00000585466 NDUFC2-KCTD14E9PQ53 114 aa9.31□□□□□ -0.92
CLIP3-202ENST00000585466 GAGE2EQ4V326 116 aa9.31□□□□□ -0.92
CLIP3-202ENST00000585466 SERTAD4-AS1Q5TG53 156 aa9.31□□□□□ -0.92
CLIP3-202ENST00000585466 SPINK6Q6UWN8 80 aa9.31□□□□□ -0.92
CLIP3-202ENST00000585466 C18orf32Q8TCD1 76 aa9.31□□□□□ -0.92
CLIP3-202ENST00000585466 LINC01600Q96MT4 127 aa9.31□□□□□ -0.92
CLIP3-202ENST00000585466 CST9LQ9H4G1 147 aa9.31□□□□□ -0.92
CLIP3-202ENST00000585466 GAGE2DQ9UEU5 116 aa9.31□□□□□ -0.92
CLIP3-202ENST00000585466 LINC01549A6NIU2 74 aa9.3□□□□□ -0.92
CLIP3-202ENST00000585466 SEC11AP67812 179 aa9.3□□□□□ -0.92
CLIP3-202ENST00000585466 FA2HQ7L5A8 372 aa9.3□□□□□ -0.92
CLIP3-202ENST00000585466 FAM19A5Q7Z5A7 132 aaPredicted RBP9.29□□□□□ -0.92
CLIP3-202ENST00000585466 SVBPQ8N300 66 aa9.29□□□□□ -0.92
CLIP3-202ENST00000585466 GEMIN7Q9H840 131 aaKnown RBP9.29□□□□□ -0.92
CLIP3-202ENST00000585466 TOMM7Q9P0U1 55 aa9.29□□□□□ -0.92
CLIP3-202ENST00000585466 TRAPPC1Q9Y5R8 145 aa9.29□□□□□ -0.92
CLIP3-202ENST00000585466 SNAPINO95295 136 aa9.28□□□□□ -0.92
CLIP3-202ENST00000585466 LINC00469Q8N7U9 141 aa9.28□□□□□ -0.92
CLIP3-202ENST00000585466 PACRGQ96M98 296 aaPredicted RBP9.28□□□□□ -0.92
CLIP3-202ENST00000585466 PRSS2P07478 247 aa9.27□□□□□ -0.93
CLIP3-202ENST00000585466 PMVKQ15126 192 aa9.27□□□□□ -0.93
CLIP3-202ENST00000585466 C6orf226Q5I0X4 101 aa9.27□□□□□ -0.93
CLIP3-202ENST00000585466 S100A1P23297 94 aa9.26□□□□□ -0.93
CLIP3-202ENST00000585466 KRTAP10-8P60410 259 aa9.26□□□□□ -0.93
CLIP3-202ENST00000585466 ODF1Q14990 250 aa9.26□□□□□ -0.93
CLIP3-202ENST00000585466 PDZD11Q5EBL8 140 aa9.26□□□□□ -0.93
CLIP3-202ENST00000585466 SMCO4Q9NRQ5 59 aa9.26□□□□□ -0.93
CLIP3-202ENST00000585466 F8VRH5 84 aa9.25□□□□□ -0.93
CLIP3-202ENST00000585466 LINC00614P0C842 121 aa9.25□□□□□ -0.93
CLIP3-202ENST00000585466 IGLC3P0DOY3 106 aa9.25□□□□□ -0.93
CLIP3-202ENST00000585466 CKS1BP61024 79 aa9.25□□□□□ -0.93
CLIP3-202ENST00000585466 C1orf137Q5JT78 98 aa9.25□□□□□ -0.93
CLIP3-202ENST00000585466 M0QXV9 152 aa9.24□□□□□ -0.93
CLIP3-202ENST00000585466 PMCHL1Q16048 86 aa9.24□□□□□ -0.93
CLIP3-202ENST00000585466 COX7B2Q8TF08 81 aa9.24□□□□□ -0.93
CLIP3-202ENST00000585466 IGLV7-43P04211 117 aa9.23□□□□□ -0.93
CLIP3-202ENST00000585466 SPINK8P0C7L1 97 aa9.23□□□□□ -0.93
CLIP3-202ENST00000585466 CXCL5P42830 114 aa9.23□□□□□ -0.93
CLIP3-202ENST00000585466 IGLV5-39A0A0G2JS06 123 aa9.22□□□□□ -0.93
CLIP3-202ENST00000585466 HBDP02042 147 aa9.22□□□□□ -0.93
CLIP3-202ENST00000585466 REG3GQ6UW15 175 aa9.22□□□□□ -0.93
CLIP3-202ENST00000585466 XAGE1AQ9HD64 81 aa9.22□□□□□ -0.93
CLIP3-202ENST00000585466 PLA2G2DQ9UNK4 145 aa9.22□□□□□ -0.93
CLIP3-202ENST00000585466 UBR4Q5T4S7 5183 aa9.22□□□□□ -0.93
CLIP3-202ENST00000585466 ZNF22P17026 224 aaPredicted RBP9.21□□□□□ -0.94
CLIP3-202ENST00000585466 CBLN2Q8IUK8 224 aa9.2□□□□□ -0.94
CLIP3-202ENST00000585466 C22orf24Q9Y442 160 aa9.19□□□□□ -0.94
CLIP3-202ENST00000585466 C11orf86A6NJI1 115 aa9.18□□□□□ -0.94
CLIP3-202ENST00000585466 RAB5BP61020 215 aa9.17□□□□□ -0.94
CLIP3-202ENST00000585466 H0Y9J4 135 aa9.16□□□□□ -0.94
CLIP3-202ENST00000585466 H3BRM9 83 aa9.16□□□□□ -0.94
CLIP3-202ENST00000585466 ATP5LO75964 103 aa9.16□□□□□ -0.94
CLIP3-202ENST00000585466 KRTAP1-4P0C5Y4 121 aa9.16□□□□□ -0.94
CLIP3-202ENST00000585466 UBE2BP63146 152 aa9.16□□□□□ -0.94
CLIP3-202ENST00000585466 TP73-AS1Q9UF72 201 aa9.16□□□□□ -0.94
CLIP3-202ENST00000585466 LRP2P98164 4655 aa9.15□□□□□ -0.94
CLIP3-202ENST00000585466 NDUFA6P56556 154 aa9.15□□□□□ -0.94
CLIP3-202ENST00000585466 DIRC1Q969H9 104 aa9.15□□□□□ -0.94
CLIP3-202ENST00000585466 CHCHD1Q96BP2 118 aaKnown RBP9.15□□□□□ -0.94
CLIP3-202ENST00000585466 IGLV5-37A0A075B6J1 123 aa9.14□□□□□ -0.95
CLIP3-202ENST00000585466 LINC00310P59036 64 aa9.14□□□□□ -0.95
CLIP3-202ENST00000585466 BAGE3Q86Y29 109 aa9.14□□□□□ -0.95
CLIP3-202ENST00000585466 MRPL55Q7Z7F7 128 aaKnown RBP9.13□□□□□ -0.95
CLIP3-202ENST00000585466 TRAV12-1A0A0B4J245 112 aa9.11□□□□□ -0.95
CLIP3-202ENST00000585466 LBHQ53QV2 105 aaPredicted RBP9.11□□□□□ -0.95
CLIP3-202ENST00000585466 PRR26Q8N8Z3 221 aa9.11□□□□□ -0.95
CLIP3-202ENST00000585466 IFI27L1Q96BM0 104 aa9.11□□□□□ -0.95
CLIP3-202ENST00000585466 ZNF625Q96I27 306 aaPredicted RBP9.11□□□□□ -0.95
CLIP3-202ENST00000585466 LINC00167Q96N53 147 aa9.11□□□□□ -0.95
CLIP3-202ENST00000585466 CHTOPQ9Y3Y2 248 aaKnown RBP9.11□□□□□ -0.95
CLIP3-202ENST00000585466 NUPR1O60356 82 aa9.1□□□□□ -0.95
CLIP3-202ENST00000585466 TRGC2P03986 189 aa9.1□□□□□ -0.95
CLIP3-202ENST00000585466 Q8NDZ9 215 aa9.1□□□□□ -0.95
CLIP3-202ENST00000585466 TMEM223A0PJW6 202 aa9.09□□□□□ -0.95
CLIP3-202ENST00000585466 ZNF861PO60384 105 aa9.09□□□□□ -0.95
CLIP3-202ENST00000585466 TMEM170BQ5T4T1 132 aa9.09□□□□□ -0.95
CLIP3-202ENST00000585466 FAM19A2Q8N3H0 131 aa9.09□□□□□ -0.95
CLIP3-202ENST00000585466 ERG28Q9UKR5 140 aa9.09□□□□□ -0.95
CLIP3-202ENST00000585466 COLCA2A8K830 154 aa9.08□□□□□ -0.96
CLIP3-202ENST00000585466 SCO1O75880 301 aa9.08□□□□□ -0.96
CLIP3-202ENST00000585466 PFN2P35080 140 aa9.08□□□□□ -0.96
CLIP3-202ENST00000585466 SND1-IT1Q9HBX3 110 aa9.08□□□□□ -0.96
CLIP3-202ENST00000585466 RPL37AP8A6NKH3 93 aa9.07□□□□□ -0.96
CLIP3-202ENST00000585466 VPREB1P12018 145 aa9.07□□□□□ -0.96
CLIP3-202ENST00000585466 KRTAP13-1Q8IUC0 172 aa9.07□□□□□ -0.96
CLIP3-202ENST00000585466 GAGE10A6NGK3 116 aa9.06□□□□□ -0.96
CLIP3-202ENST00000585466 BCE1O60756 84 aa9.06□□□□□ -0.96
CLIP3-202ENST00000585466 SERF1AO75920 110 aa9.06□□□□□ -0.96
CLIP3-202ENST00000585466 COX17Q14061 63 aa9.06□□□□□ -0.96
CLIP3-202ENST00000585466 IGLV1-50A0A075B6I6 118 aa9.05□□□□□ -0.96
CLIP3-202ENST00000585466 HSBP1O75506 76 aa9.05□□□□□ -0.96
CLIP3-202ENST00000585466 SFTA2Q6UW10 78 aa9.03□□□□□ -0.96
CLIP3-202ENST00000585466 NKAPP1Q8N9T2 125 aa9.02□□□□□ -0.97
CLIP3-202ENST00000585466 LPAP08519 4548 aa9.02□□□□□ -0.97
CLIP3-202ENST00000585466 IGKV2-28A0A075B6P5 120 aa9□□□□□ -0.97
CLIP3-202ENST00000585466 IGKV2D-28P01615 120 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms